Wall clock time and date at job start Tue Mar 31 2020 12:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46733 * 2 1 4 4 C 1.52998 * 109.46978 * 120.00045 * 2 1 3 5 5 N 1.46896 * 109.47184 * 63.44143 * 4 2 1 6 6 C 1.46897 * 111.00146 * 76.28582 * 5 4 2 7 7 C 1.50697 * 109.47521 * 199.87902 * 6 5 4 8 8 C 1.38288 * 119.97184 * 84.12924 * 7 6 5 9 9 C 1.38248 * 120.10896 * 179.70705 * 8 7 6 10 10 C 1.38165 * 120.05745 * 0.25058 * 9 8 7 11 11 C 1.38710 * 119.94400 * 0.03091 * 10 9 8 12 12 O 1.35903 * 120.05789 * 180.02562 * 11 10 9 13 13 C 1.42901 * 116.99630 * 359.97438 * 12 11 10 14 14 C 1.52998 * 109.46971 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47019 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99839 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00082 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47037 * 60.00072 * 19 17 15 21 21 H 1.48501 * 109.47209 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47387 * 300.00046 * 19 17 15 23 23 C 1.38130 * 119.97293 * 264.38776 * 7 6 5 24 24 C 1.46901 * 110.99699 * 200.23938 * 5 4 2 25 25 C 1.53001 * 117.49666 * 131.60200 * 24 5 4 26 26 C 1.53000 * 117.50184 * 62.97923 * 24 5 4 27 27 H 1.08994 * 109.47508 * 304.62539 * 1 2 3 28 28 H 1.08995 * 109.47093 * 64.62899 * 1 2 3 29 29 H 1.09007 * 109.46704 * 184.62488 * 1 2 3 30 30 H 1.08991 * 109.47106 * 240.00401 * 2 1 3 31 31 H 1.08994 * 109.47137 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47534 * 300.00107 * 3 2 1 33 33 H 1.09002 * 109.47074 * 59.99853 * 3 2 1 34 34 H 1.08997 * 109.47252 * 303.43683 * 4 2 1 35 35 H 1.09004 * 109.46413 * 183.44371 * 4 2 1 36 36 H 1.09000 * 109.47109 * 79.87853 * 6 5 4 37 37 H 1.09001 * 109.47194 * 319.87883 * 6 5 4 38 38 H 1.07999 * 119.94242 * 359.97438 * 8 7 6 39 39 H 1.08003 * 119.96858 * 180.27797 * 9 8 7 40 40 H 1.07995 * 120.02628 * 179.97438 * 10 9 8 41 41 H 1.09009 * 109.46962 * 299.99705 * 13 12 11 42 42 H 1.08995 * 109.47407 * 59.99401 * 13 12 11 43 43 H 1.08997 * 109.47298 * 299.99426 * 14 13 12 44 44 H 1.09003 * 109.46997 * 59.99760 * 14 13 12 45 45 H 0.97001 * 120.00156 * 180.02562 * 18 17 15 46 46 H 1.08002 * 120.02310 * 359.97438 * 23 7 6 47 47 H 1.08996 * 115.55144 * 277.30439 * 24 5 4 48 48 H 1.08998 * 117.49841 * 359.97438 * 25 24 5 49 49 H 1.09002 * 117.49725 * 145.02053 * 25 24 5 50 50 H 1.08999 * 117.49868 * 214.97754 * 26 24 5 51 51 H 1.09001 * 117.49551 * 359.97225 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6194 -2.1281 1.2084 6 6 2.4444 -2.8971 0.2671 7 6 1.7187 -4.1593 -0.1218 8 6 0.7846 -4.1329 -1.1412 9 6 0.1216 -5.2904 -1.5045 10 6 0.3871 -6.4756 -0.8460 11 6 1.3193 -6.5035 0.1808 12 8 1.5827 -7.6682 0.8297 13 6 0.8620 -8.8260 0.4027 14 6 1.2886 -10.0310 1.2433 15 6 0.5282 -11.2518 0.7934 16 1 -0.1880 -11.1757 -0.0112 17 6 0.7462 -12.4657 1.4099 18 7 1.6180 -12.5583 2.3901 19 14 -0.1970 -13.9789 0.8527 20 1 0.0960 -14.2456 -0.5785 21 1 0.2172 -15.1485 1.6685 22 1 -1.6533 -13.7456 1.0246 23 6 1.9832 -5.3404 0.5437 24 6 1.6538 -2.7269 2.5494 25 6 0.4232 -3.5149 3.0029 26 6 0.7181 -2.1413 3.6088 27 1 -0.3634 0.5839 0.8456 28 1 -0.3633 0.4403 -0.9285 29 1 -0.3633 -1.0244 0.0829 30 1 1.8934 -0.5137 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6273 -0.2443 2.1381 35 1 3.1283 -0.6680 1.2805 36 1 3.3920 -3.1541 0.7406 37 1 2.6339 -2.2979 -0.6234 38 1 0.5759 -3.2074 -1.6573 39 1 -0.6042 -5.2681 -2.3039 40 1 -0.1314 -7.3794 -1.1298 41 1 -0.2072 -8.6555 0.5291 42 1 1.0771 -9.0208 -0.6479 43 1 2.3578 -10.2017 1.1173 44 1 1.0731 -9.8358 2.2938 45 1 1.7716 -13.4123 2.8235 46 1 2.7100 -5.3596 1.3423 47 1 2.6295 -3.0823 2.8807 48 1 -0.4120 -3.5886 2.3064 49 1 0.5892 -4.3889 3.6327 50 1 1.0782 -2.1116 4.6372 51 1 0.0774 -1.3113 3.3109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092008917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:58 Heat of formation + Delta-G solvation = -18.847979 kcal Electronic energy + Delta-G solvation = -26419.475489 eV Core-core repulsion = 22897.571553 eV Total energy + Delta-G solvation = -3521.903935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12078 -39.88922 -38.30397 -36.75821 -35.49221 -34.47342 -32.57775 -31.90827 -30.52540 -27.85671 -27.56258 -26.85852 -25.50907 -23.59812 -23.32528 -23.14315 -21.81536 -21.33475 -20.52317 -19.10820 -18.17028 -17.22056 -16.97208 -16.93367 -16.77275 -16.46375 -16.23284 -16.01370 -15.53671 -15.09067 -14.56719 -14.38007 -14.32657 -14.30419 -14.21109 -13.68952 -13.45375 -13.14982 -13.00086 -12.95483 -12.90107 -12.61304 -12.55678 -12.51102 -12.33981 -12.28169 -11.95068 -11.79113 -11.73819 -11.59653 -11.57490 -11.39397 -11.35206 -11.22178 -10.94646 -10.62509 -9.75934 -9.23817 -9.04316 -8.27458 -6.41403 0.40185 0.59859 1.39951 1.44138 1.52098 2.27579 2.51522 2.67922 2.90280 3.06599 3.09244 3.82473 3.93447 3.98133 4.05656 4.07343 4.14336 4.19430 4.23795 4.25844 4.27533 4.32897 4.46431 4.53495 4.56574 4.59810 4.66875 4.72706 4.78547 4.80423 4.84896 4.85271 4.93483 4.98081 5.11340 5.14688 5.16697 5.21335 5.30718 5.31209 5.36631 5.45366 5.47811 5.53687 5.56529 5.62396 5.66853 5.70613 5.93934 6.06966 6.13377 6.21951 6.60305 6.73026 7.28589 8.85421 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.002323 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.252664 B =12050.028747 C =12599.661019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.144 4.144 4 C 0.062 3.938 5 N -0.503 5.503 6 C 0.101 3.899 7 C -0.032 4.032 8 C -0.138 4.138 9 C -0.080 4.080 10 C -0.224 4.224 11 C 0.106 3.894 12 O -0.343 6.343 13 C 0.087 3.913 14 C 0.029 3.971 15 C -0.547 4.547 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.977 3.023 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.264 1.264 23 C -0.154 4.154 24 C 0.005 3.995 25 C -0.169 4.169 26 C -0.154 4.154 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.123 0.877 41 H 0.057 0.943 42 H 0.058 0.942 43 H -0.002 1.002 44 H -0.003 1.003 45 H 0.267 0.733 46 H 0.114 0.886 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.104 0.896 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 29.300 -5.503 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.065 4.065 5 N -0.226 5.226 6 C -0.026 4.026 7 C -0.033 4.033 8 C -0.157 4.157 9 C -0.098 4.098 10 C -0.243 4.243 11 C 0.061 3.939 12 O -0.258 6.258 13 C 0.012 3.988 14 C -0.008 4.008 15 C -0.585 4.585 16 H 0.088 0.912 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.800 3.200 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.173 4.173 24 C -0.104 4.104 25 C -0.207 4.207 26 C -0.192 4.192 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.121 0.879 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.141 0.859 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.076 0.924 46 H 0.133 0.867 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.123 0.877 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.271 29.146 -5.379 29.665 hybrid contribution 0.492 -1.503 0.402 1.632 sum -0.779 27.642 -4.977 28.098 Atomic orbital electron populations 1.21679 0.94887 1.01805 1.00887 1.21093 0.96458 0.95827 0.97342 1.21792 1.00972 0.95237 1.02175 1.22228 0.97999 0.86862 0.99419 1.61680 1.53622 1.01946 1.05375 1.21056 0.92889 0.91505 0.97175 1.19577 0.96228 0.93029 0.94426 1.21070 0.97351 0.98598 0.98681 1.21191 0.98699 0.91297 0.98629 1.21442 1.02216 1.00859 0.99790 1.19458 0.95455 0.86315 0.92658 1.86074 1.64081 1.16506 1.59134 1.22814 0.94787 0.82566 0.98596 1.18951 0.96124 0.91101 0.94603 1.21359 1.24001 0.93696 1.19406 0.91167 1.26061 0.96187 1.02814 0.94720 1.70115 1.35528 1.26771 1.24549 0.85329 0.78912 0.77155 0.78626 1.18808 1.20716 1.18822 1.20308 1.03342 0.90628 1.03019 1.22407 0.94109 1.04000 0.89838 1.22868 0.99682 0.95119 1.03056 1.23059 1.02010 0.96741 0.97352 0.93350 0.93043 0.92716 0.91300 0.92546 0.92103 0.92526 0.90364 0.94337 0.93748 0.87892 0.83746 0.83525 0.85902 0.92479 0.92376 0.98408 0.98442 0.92426 0.86746 0.90067 0.89768 0.90108 0.87748 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.13 71.98 0.66 -1.11 16 2 C -0.09 -1.04 2.96 -10.79 -0.03 -1.07 16 3 C -0.14 -1.35 9.19 71.98 0.66 -0.68 16 4 C 0.06 0.84 4.33 86.30 0.37 1.21 16 5 N -0.50 -8.78 3.79 -875.55 -3.32 -12.09 16 6 C 0.10 1.87 4.94 85.56 0.42 2.29 16 7 C -0.03 -0.77 5.14 -19.88 -0.10 -0.87 16 8 C -0.14 -3.09 9.72 22.28 0.22 -2.87 16 9 C -0.08 -1.98 10.04 22.25 0.22 -1.76 16 10 C -0.22 -7.11 9.04 22.37 0.20 -6.91 16 11 C 0.11 3.87 6.69 22.51 0.15 4.02 16 12 O -0.34 -15.17 10.14 -92.46 -0.94 -16.10 16 13 C 0.09 3.94 4.68 71.98 0.34 4.28 16 14 C 0.03 1.65 5.34 29.85 0.16 1.81 16 15 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 16 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 17 C 0.00 0.04 5.46 84.65 0.46 0.51 16 18 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 19 Si 0.98 43.92 29.54 68.60 2.03 45.95 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 C -0.15 -4.76 9.37 22.37 0.21 -4.55 16 24 C 0.01 0.10 4.58 44.92 0.21 0.31 16 25 C -0.17 -3.85 10.46 30.59 0.32 -3.53 16 26 C -0.15 -2.63 9.56 30.59 0.29 -2.34 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.91 7.58 -2.38 -0.02 0.89 16 30 H 0.07 0.83 6.72 -2.39 -0.02 0.81 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 1.04 6.88 -2.39 -0.02 1.02 16 35 H 0.04 0.51 7.99 -2.39 -0.02 0.49 16 36 H 0.04 0.85 7.79 -2.39 -0.02 0.83 16 37 H 0.10 1.53 6.47 -2.39 -0.02 1.51 16 38 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.12 3.91 6.30 -2.91 -0.02 3.89 16 41 H 0.06 2.46 7.66 -2.38 -0.02 2.44 16 42 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 43 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.11 3.58 8.06 -2.91 -0.02 3.56 16 47 H 0.08 1.68 7.97 -2.39 -0.02 1.66 16 48 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.10 1.63 7.80 -2.39 -0.02 1.61 16 Total: -1.00 -65.84 410.28 3.92 -61.93 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.87 Total: 19.72 kcal Atomic # 6 Polarization: -47.42 SS G_CDS: 4.99 Total: -42.43 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -3.03 Total: -69.06 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.94 Total: -16.10 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.84 3.92 -61.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092008917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.077 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds