Wall clock time and date at job start Tue Mar 31 2020 11:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 C 1.52997 * 109.47172 * 120.00080 * 2 1 3 5 5 H 1.08999 * 109.47262 * 185.50720 * 4 2 1 6 6 C 1.52998 * 109.47066 * 305.50679 * 4 2 1 7 7 C 1.53006 * 109.46934 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.46971 * 299.99620 * 7 6 4 9 9 C 1.52998 * 109.46981 * 60.00409 * 8 7 6 10 10 C 1.53003 * 109.46925 * 65.50352 * 4 2 1 11 11 H 1.08999 * 109.47451 * 300.00252 * 10 4 2 12 12 N 1.46898 * 109.46955 * 60.00214 * 10 4 2 13 13 C 1.46903 * 110.99978 * 204.99662 * 12 10 4 14 14 C 1.50696 * 109.47174 * 179.97438 * 13 12 10 15 15 C 1.38322 * 119.96825 * 269.97773 * 14 13 12 16 16 C 1.38278 * 120.14269 * 179.70060 * 15 14 13 17 17 C 1.38127 * 120.06443 * 0.59987 * 16 15 14 18 18 C 1.38863 * 119.93084 * 359.42766 * 17 16 15 19 19 O 1.35752 * 120.06808 * 180.25405 * 18 17 16 20 20 C 1.34825 * 117.00148 * 354.25208 * 19 18 17 21 21 H 1.08008 * 120.00095 * 354.59568 * 20 19 18 22 22 C 1.38653 * 120.00045 * 174.59881 * 20 19 18 23 23 N 1.31554 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47121 * 90.00156 * 24 22 20 26 26 H 1.48502 * 109.47396 * 209.99786 * 24 22 20 27 27 H 1.48497 * 109.47224 * 330.00357 * 24 22 20 28 28 C 1.38083 * 119.96589 * 90.00303 * 14 13 12 29 29 H 1.08996 * 109.46883 * 300.00138 * 1 2 3 30 30 H 1.09000 * 109.46832 * 59.99809 * 1 2 3 31 31 H 1.08991 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47373 * 240.00241 * 2 1 3 33 33 H 1.08996 * 109.46995 * 304.87246 * 3 2 1 34 34 H 1.08999 * 109.46882 * 64.87144 * 3 2 1 35 35 H 1.08996 * 109.47167 * 184.87056 * 3 2 1 36 36 H 1.09003 * 109.47531 * 59.99943 * 6 4 2 37 37 H 1.09005 * 109.47210 * 299.99523 * 6 4 2 38 38 H 1.09002 * 109.47140 * 179.97438 * 7 6 4 39 39 H 1.08999 * 109.47348 * 60.00069 * 7 6 4 40 40 H 1.08995 * 109.46893 * 299.99908 * 8 7 6 41 41 H 1.09000 * 109.46684 * 180.02562 * 8 7 6 42 42 H 1.08996 * 109.47327 * 179.97438 * 9 8 7 43 43 H 1.09003 * 109.47531 * 59.99695 * 9 8 7 44 44 H 1.00903 * 111.00415 * 81.04856 * 12 10 4 45 45 H 1.09008 * 109.46918 * 60.00126 * 13 12 10 46 46 H 1.08997 * 109.47186 * 300.00277 * 13 12 10 47 47 H 1.07999 * 119.93101 * 359.97438 * 15 14 13 48 48 H 1.07999 * 119.97430 * 180.32457 * 16 15 14 49 49 H 1.08003 * 120.03375 * 179.69819 * 17 16 15 50 50 H 0.97006 * 119.99895 * 180.02562 * 23 22 20 51 51 H 1.07999 * 120.03232 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1256 -0.6366 1.2999 6 6 1.4202 -0.0844 2.4946 7 6 1.9307 -0.8053 3.7439 8 6 1.5373 -2.2823 3.6769 9 6 2.1572 -2.9192 2.4315 10 6 1.6461 -2.1982 1.1819 11 1 0.5606 -2.2828 1.1312 12 7 2.2413 -2.8096 -0.0139 13 6 1.4654 -3.9787 -0.4490 14 6 2.1043 -4.5775 -1.6754 15 6 1.7234 -4.1465 -2.9333 16 6 2.3118 -4.6891 -4.0609 17 6 3.2733 -5.6726 -3.9345 18 6 3.6576 -6.1079 -2.6731 19 8 4.6060 -7.0707 -2.5454 20 6 5.0496 -7.6473 -3.6806 21 1 4.5901 -7.4011 -4.6266 22 6 6.0956 -8.5562 -3.6336 23 7 6.6548 -8.8565 -2.4813 24 14 6.7096 -9.3556 -5.2063 25 1 7.7881 -8.5227 -5.7965 26 1 7.2406 -10.7081 -4.8995 27 1 5.5885 -9.4715 -6.1731 28 6 3.0691 -5.5564 -1.5422 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6072 1.9809 -0.8431 34 1 1.7497 1.9305 0.9304 35 1 3.1265 1.4437 -0.0873 36 1 0.3346 -0.1690 2.4440 37 1 1.7008 0.9678 2.5426 38 1 1.4894 -0.3513 4.6312 39 1 3.0162 -0.7203 3.7944 40 1 0.4518 -2.3672 3.6265 41 1 1.9006 -2.7958 4.5671 42 1 1.8773 -3.9716 2.3840 43 1 3.2427 -2.8342 2.4819 44 1 3.2062 -3.0561 0.1482 45 1 0.4462 -3.6714 -0.6840 46 1 1.4462 -4.7199 0.3499 47 1 0.9680 -3.3814 -3.0349 48 1 2.0160 -4.3468 -5.0416 49 1 3.7290 -6.0995 -4.8157 50 1 7.3869 -9.4921 -2.4485 51 1 3.3661 -5.8925 -0.5598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160339122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:50 Heat of formation + Delta-G solvation = -36.722301 kcal Electronic energy + Delta-G solvation = -26824.154476 eV Core-core repulsion = 23301.475452 eV Total energy + Delta-G solvation = -3522.679024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.85080 -38.96154 -36.80099 -35.20221 -34.63081 -32.26917 -31.06326 -29.60292 -29.12319 -28.00363 -27.24199 -25.41815 -24.36338 -23.53940 -21.79468 -21.45863 -20.73600 -20.41233 -18.97445 -17.61322 -16.95724 -15.87450 -15.23291 -15.17056 -14.98342 -14.64174 -14.49812 -14.39068 -14.32992 -13.73293 -13.64580 -13.54239 -13.34320 -13.00208 -12.80214 -12.62940 -12.47677 -12.11522 -11.95051 -11.86001 -11.59217 -11.55036 -11.41039 -11.26452 -11.10049 -10.95133 -10.81880 -10.77171 -10.65140 -10.58484 -10.40174 -10.30172 -10.17850 -9.95440 -9.34202 -8.81876 -8.27533 -7.98693 -7.19433 -6.42894 -4.01940 2.14323 2.42926 3.13964 3.14622 3.19345 3.98140 4.21497 4.49265 4.61465 4.65320 4.85046 4.94283 4.98898 5.08126 5.12996 5.15720 5.24675 5.29511 5.30807 5.35291 5.42507 5.46476 5.55544 5.60213 5.63654 5.67273 5.78842 5.83528 5.85764 5.88872 5.92377 5.94968 5.98281 5.98717 6.01656 6.05659 6.12123 6.22580 6.23387 6.30352 6.36619 6.45125 6.57958 6.69600 6.94585 7.10508 7.18100 7.31765 7.42405 7.46256 7.55335 7.86406 8.02240 9.03166 9.74111 10.75428 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002634 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.098333 B =10626.784072 C =11388.366970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.067 4.067 5 H 0.067 0.933 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.114 4.114 9 C -0.152 4.152 10 C 0.092 3.908 11 H 0.077 0.923 12 N -0.675 5.675 13 C 0.107 3.893 14 C -0.046 4.046 15 C -0.188 4.188 16 C -0.078 4.078 17 C -0.231 4.231 18 C 0.152 3.848 19 O -0.181 6.181 20 C -0.390 4.390 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.185 4.185 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.344 0.656 45 H 0.073 0.927 46 H 0.033 0.967 47 H 0.105 0.895 48 H 0.106 0.894 49 H 0.125 0.875 50 H 0.269 0.731 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 16.557 8.661 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.086 4.086 5 H 0.086 0.914 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.152 4.152 9 C -0.191 4.191 10 C -0.018 4.018 11 H 0.095 0.905 12 N -0.305 5.305 13 C -0.021 4.021 14 C -0.046 4.046 15 C -0.208 4.208 16 C -0.096 4.096 17 C -0.251 4.251 18 C 0.099 3.901 19 O -0.085 6.085 20 C -0.467 4.467 21 H 0.108 0.892 22 C -0.165 4.165 23 N -0.500 5.500 24 Si 0.764 3.236 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.205 4.205 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.163 0.837 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.143 0.857 50 H 0.079 0.921 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.202 16.721 8.494 21.846 hybrid contribution 0.664 -1.116 -0.186 1.312 sum -10.538 15.605 8.308 20.581 Atomic orbital electron populations 1.21900 0.96101 1.01456 1.00867 1.21031 0.95154 0.95070 0.99210 1.21908 1.00839 0.96770 1.01103 1.21082 1.00050 0.93468 0.93960 0.91425 1.21715 1.00650 0.99195 0.93999 1.21556 1.01009 0.95426 0.97799 1.21454 1.00486 0.95693 0.97594 1.22320 1.01030 0.99845 0.95927 1.21656 0.99100 0.93683 0.87383 0.90493 1.60605 1.06357 1.30010 1.33502 1.20797 0.96803 0.90604 0.93899 1.19175 0.96089 0.95371 0.93981 1.20403 1.04627 1.03881 0.91850 1.20745 0.95654 0.95664 0.97542 1.21190 1.03418 1.02801 0.97667 1.19320 0.89318 0.88468 0.92977 1.83987 1.47066 1.43504 1.33893 1.21298 1.17049 1.22743 0.85586 0.89195 1.25268 0.95590 0.96935 0.98730 1.70038 1.23140 1.32431 1.24374 0.85732 0.79247 0.78524 0.80054 1.19902 1.20285 1.19222 1.20021 1.01484 1.02146 0.96863 0.93112 0.93370 0.92718 0.89222 0.93171 0.93063 0.92996 0.91713 0.91830 0.92388 0.92130 0.92187 0.92320 0.92027 0.91727 0.83724 0.90872 0.94857 0.87682 0.87586 0.85733 0.92097 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.45 37.16 0.31 -1.01 16 2 C -0.09 -0.84 2.61 -90.62 -0.24 -1.08 16 3 C -0.15 -1.32 9.06 37.16 0.34 -0.98 16 4 C -0.07 -0.63 1.67 -90.62 -0.15 -0.78 16 5 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.12 -0.96 4.47 -26.73 -0.12 -1.08 16 7 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 8 C -0.11 -0.98 5.92 -26.73 -0.16 -1.14 16 9 C -0.15 -1.52 5.17 -26.70 -0.14 -1.66 16 10 C 0.09 0.95 1.68 -67.68 -0.11 0.83 16 11 H 0.08 0.81 6.24 -51.93 -0.32 0.49 16 12 N -0.68 -8.47 5.38 -107.96 -0.58 -9.05 16 13 C 0.11 1.49 5.61 -4.98 -0.03 1.46 16 14 C -0.05 -0.80 5.39 -104.65 -0.56 -1.37 16 15 C -0.19 -3.30 9.70 -39.54 -0.38 -3.68 16 16 C -0.08 -1.46 10.04 -39.61 -0.40 -1.85 16 17 C -0.23 -5.10 9.13 -39.39 -0.36 -5.46 16 18 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 19 O -0.18 -5.19 9.76 0.06 0.00 -5.19 16 20 C -0.39 -11.00 9.44 30.89 0.29 -10.71 16 21 H 0.09 2.36 5.30 -52.48 -0.28 2.08 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 24 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.19 -3.89 9.65 -39.39 -0.38 -4.27 16 29 H 0.05 0.41 6.34 -51.93 -0.33 0.08 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.53 6.58 -51.93 -0.34 0.18 16 32 H 0.09 1.08 7.44 -51.93 -0.39 0.69 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.41 6.37 -51.93 -0.33 0.08 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.52 6.34 -51.93 -0.33 0.19 16 37 H 0.06 0.49 6.48 -51.93 -0.34 0.16 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.66 7.46 -51.93 -0.39 0.28 16 43 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 44 H 0.34 4.65 8.46 -39.29 -0.33 4.32 16 45 H 0.07 0.95 8.00 -51.92 -0.42 0.53 16 46 H 0.03 0.46 7.38 -51.93 -0.38 0.08 16 47 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.12 2.76 5.71 -52.48 -0.30 2.46 16 50 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -29.29 389.59 -10.26 -39.55 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.68 Total: 7.39 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -2.60 Total: -29.47 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.18 Total: -33.80 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.29 -10.26 -39.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160339122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.826 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds