Wall clock time and date at job start Tue Mar 31 2020 11:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 C 1.52997 * 109.47172 * 120.00080 * 2 1 3 5 5 H 1.08999 * 109.47262 * 185.50720 * 4 2 1 6 6 C 1.52998 * 109.47066 * 305.50679 * 4 2 1 7 7 C 1.53006 * 109.46934 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.46971 * 299.99620 * 7 6 4 9 9 C 1.52998 * 109.46981 * 60.00409 * 8 7 6 10 10 C 1.53003 * 109.46925 * 65.50352 * 4 2 1 11 11 H 1.08999 * 109.47451 * 300.00252 * 10 4 2 12 12 N 1.46898 * 109.46955 * 60.00214 * 10 4 2 13 13 C 1.46903 * 110.99978 * 204.99662 * 12 10 4 14 14 C 1.50696 * 109.47174 * 179.97438 * 13 12 10 15 15 C 1.38322 * 119.96825 * 269.97773 * 14 13 12 16 16 C 1.38278 * 120.14269 * 179.70060 * 15 14 13 17 17 C 1.38127 * 120.06443 * 0.59987 * 16 15 14 18 18 C 1.38863 * 119.93084 * 359.42766 * 17 16 15 19 19 O 1.35752 * 120.06808 * 180.25405 * 18 17 16 20 20 C 1.34825 * 117.00148 * 354.25208 * 19 18 17 21 21 H 1.08008 * 120.00095 * 354.59568 * 20 19 18 22 22 C 1.38653 * 120.00045 * 174.59881 * 20 19 18 23 23 N 1.31554 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47121 * 90.00156 * 24 22 20 26 26 H 1.48502 * 109.47396 * 209.99786 * 24 22 20 27 27 H 1.48497 * 109.47224 * 330.00357 * 24 22 20 28 28 C 1.38083 * 119.96589 * 90.00303 * 14 13 12 29 29 H 1.08996 * 109.46883 * 300.00138 * 1 2 3 30 30 H 1.09000 * 109.46832 * 59.99809 * 1 2 3 31 31 H 1.08991 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47373 * 240.00241 * 2 1 3 33 33 H 1.08996 * 109.46995 * 304.87246 * 3 2 1 34 34 H 1.08999 * 109.46882 * 64.87144 * 3 2 1 35 35 H 1.08996 * 109.47167 * 184.87056 * 3 2 1 36 36 H 1.09003 * 109.47531 * 59.99943 * 6 4 2 37 37 H 1.09005 * 109.47210 * 299.99523 * 6 4 2 38 38 H 1.09002 * 109.47140 * 179.97438 * 7 6 4 39 39 H 1.08999 * 109.47348 * 60.00069 * 7 6 4 40 40 H 1.08995 * 109.46893 * 299.99908 * 8 7 6 41 41 H 1.09000 * 109.46684 * 180.02562 * 8 7 6 42 42 H 1.08996 * 109.47327 * 179.97438 * 9 8 7 43 43 H 1.09003 * 109.47531 * 59.99695 * 9 8 7 44 44 H 1.00903 * 111.00415 * 81.04856 * 12 10 4 45 45 H 1.09008 * 109.46918 * 60.00126 * 13 12 10 46 46 H 1.08997 * 109.47186 * 300.00277 * 13 12 10 47 47 H 1.07999 * 119.93101 * 359.97438 * 15 14 13 48 48 H 1.07999 * 119.97430 * 180.32457 * 16 15 14 49 49 H 1.08003 * 120.03375 * 179.69819 * 17 16 15 50 50 H 0.97006 * 119.99895 * 180.02562 * 23 22 20 51 51 H 1.07999 * 120.03232 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1256 -0.6366 1.2999 6 6 1.4202 -0.0844 2.4946 7 6 1.9307 -0.8053 3.7439 8 6 1.5373 -2.2823 3.6769 9 6 2.1572 -2.9192 2.4315 10 6 1.6461 -2.1982 1.1819 11 1 0.5606 -2.2828 1.1312 12 7 2.2413 -2.8096 -0.0139 13 6 1.4654 -3.9787 -0.4490 14 6 2.1043 -4.5775 -1.6754 15 6 1.7234 -4.1465 -2.9333 16 6 2.3118 -4.6891 -4.0609 17 6 3.2733 -5.6726 -3.9345 18 6 3.6576 -6.1079 -2.6731 19 8 4.6060 -7.0707 -2.5454 20 6 5.0496 -7.6473 -3.6806 21 1 4.5901 -7.4011 -4.6266 22 6 6.0956 -8.5562 -3.6336 23 7 6.6548 -8.8565 -2.4813 24 14 6.7096 -9.3556 -5.2063 25 1 7.7881 -8.5227 -5.7965 26 1 7.2406 -10.7081 -4.8995 27 1 5.5885 -9.4715 -6.1731 28 6 3.0691 -5.5564 -1.5422 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6072 1.9809 -0.8431 34 1 1.7497 1.9305 0.9304 35 1 3.1265 1.4437 -0.0873 36 1 0.3346 -0.1690 2.4440 37 1 1.7008 0.9678 2.5426 38 1 1.4894 -0.3513 4.6312 39 1 3.0162 -0.7203 3.7944 40 1 0.4518 -2.3672 3.6265 41 1 1.9006 -2.7958 4.5671 42 1 1.8773 -3.9716 2.3840 43 1 3.2427 -2.8342 2.4819 44 1 3.2062 -3.0561 0.1482 45 1 0.4462 -3.6714 -0.6840 46 1 1.4462 -4.7199 0.3499 47 1 0.9680 -3.3814 -3.0349 48 1 2.0160 -4.3468 -5.0416 49 1 3.7290 -6.0995 -4.8157 50 1 7.3869 -9.4921 -2.4485 51 1 3.3661 -5.8925 -0.5598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160339122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:49 Heat of formation + Delta-G solvation = -51.785058 kcal Electronic energy + Delta-G solvation = -26824.807646 eV Core-core repulsion = 23301.475452 eV Total energy + Delta-G solvation = -3523.332194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90236 -40.46998 -38.46189 -36.18087 -35.53632 -34.28519 -32.37683 -30.81928 -30.31181 -29.12135 -27.94503 -27.36735 -25.66708 -24.28531 -23.20116 -22.54515 -22.24899 -21.23778 -19.86272 -19.39626 -18.72898 -16.84078 -16.73798 -16.45028 -16.09266 -16.07670 -15.69838 -15.51209 -15.42180 -15.26499 -14.96629 -14.63099 -14.20604 -14.14111 -14.02697 -13.82689 -13.54166 -13.46274 -13.21743 -12.98922 -12.86363 -12.66300 -12.46043 -12.28950 -12.22511 -12.21140 -12.15051 -12.06483 -11.82687 -11.65496 -11.51112 -11.21649 -11.05901 -10.94983 -10.80731 -10.73096 -9.69585 -9.17503 -8.96434 -8.47258 -6.15452 0.53926 0.77602 1.34238 1.43737 1.51718 2.17433 2.80174 3.10294 3.38446 3.54353 3.71373 3.87146 3.99844 4.06533 4.12740 4.21215 4.24948 4.35170 4.36786 4.43305 4.50081 4.54842 4.59735 4.64272 4.65551 4.71123 4.75247 4.76315 4.87690 4.92982 4.98346 5.04596 5.09153 5.11477 5.13688 5.20798 5.22723 5.25853 5.29629 5.32308 5.33297 5.38512 5.52043 5.55839 5.67119 5.71087 5.75074 5.79645 5.82575 6.02704 6.16994 6.27459 6.43400 6.97808 7.79539 8.76252 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002634 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.098333 B =10626.784072 C =11388.366970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.062 4.062 5 H 0.054 0.946 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.151 4.151 10 C 0.097 3.903 11 H 0.083 0.917 12 N -0.676 5.676 13 C 0.114 3.886 14 C -0.034 4.034 15 C -0.169 4.169 16 C -0.073 4.073 17 C -0.245 4.245 18 C 0.113 3.887 19 O -0.235 6.235 20 C -0.412 4.412 21 H 0.100 0.900 22 C -0.023 4.023 23 N -0.922 5.922 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.196 4.196 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.336 0.664 45 H 0.095 0.905 46 H 0.033 0.967 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.116 0.884 50 H 0.272 0.728 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 18.901 8.139 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.081 4.081 5 H 0.072 0.928 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.150 4.150 9 C -0.190 4.190 10 C -0.013 4.013 11 H 0.101 0.899 12 N -0.305 5.305 13 C -0.015 4.015 14 C -0.035 4.035 15 C -0.188 4.188 16 C -0.091 4.091 17 C -0.264 4.264 18 C 0.063 3.937 19 O -0.142 6.142 20 C -0.488 4.488 21 H 0.117 0.883 22 C -0.221 4.221 23 N -0.560 5.560 24 Si 0.837 3.163 25 H -0.188 1.188 26 H -0.195 1.195 27 H -0.177 1.177 28 C -0.216 4.216 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.154 0.846 45 H 0.113 0.887 46 H 0.051 0.949 47 H 0.161 0.839 48 H 0.161 0.839 49 H 0.134 0.866 50 H 0.081 0.919 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.663 19.115 7.976 24.813 hybrid contribution 1.193 -1.598 0.061 1.995 sum -12.470 17.517 8.037 22.955 Atomic orbital electron populations 1.21867 0.95178 1.01354 1.01560 1.20966 0.95852 0.95328 0.98111 1.21882 1.00377 0.96273 1.01857 1.21034 0.99351 0.92874 0.94863 0.92790 1.21683 1.00878 0.99439 0.93037 1.21549 1.00764 0.94945 0.98369 1.21442 1.00749 0.96063 0.96708 1.22285 1.00517 0.99398 0.96798 1.21684 0.99152 0.94024 0.86416 0.89876 1.60639 1.05862 1.29049 1.34974 1.20777 0.97421 0.91046 0.92231 1.19578 0.94276 0.93571 0.96076 1.20918 1.03788 1.03043 0.91044 1.21150 0.94041 0.94039 0.99897 1.21299 1.04648 1.04060 0.96435 1.19877 0.89674 0.89090 0.95084 1.83943 1.49561 1.46022 1.34625 1.21787 1.17616 1.23377 0.86037 0.88310 1.26575 0.95442 0.97308 1.02736 1.70186 1.24485 1.34157 1.27203 0.84599 0.78972 0.77442 0.75281 1.18800 1.19546 1.17690 1.20222 1.02421 1.03122 0.95818 0.91917 0.93235 0.93154 0.91570 0.92885 0.91907 0.93714 0.90982 0.91035 0.90995 0.92739 0.91461 0.92118 0.93050 0.92762 0.84638 0.88707 0.94859 0.83910 0.83899 0.86603 0.91888 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.45 71.98 0.61 -1.55 16 2 C -0.08 -1.47 2.61 -10.79 -0.03 -1.50 16 3 C -0.15 -2.29 9.06 71.98 0.65 -1.64 16 4 C -0.06 -1.07 1.67 -10.79 -0.02 -1.09 16 5 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 6 C -0.11 -1.53 4.47 30.60 0.14 -1.40 16 7 C -0.12 -1.63 5.92 30.60 0.18 -1.45 16 8 C -0.11 -1.71 5.92 30.59 0.18 -1.53 16 9 C -0.15 -2.89 5.17 30.61 0.16 -2.73 16 10 C 0.10 1.83 1.68 44.94 0.08 1.91 16 11 H 0.08 1.52 6.24 -2.39 -0.01 1.50 16 12 N -0.68 -16.08 5.38 -495.47 -2.66 -18.74 16 13 C 0.11 2.93 5.61 85.56 0.48 3.41 16 14 C -0.03 -1.16 5.39 -19.88 -0.11 -1.27 16 15 C -0.17 -5.37 9.70 22.30 0.22 -5.15 16 16 C -0.07 -2.57 10.04 22.25 0.22 -2.34 16 17 C -0.24 -10.92 9.13 22.39 0.20 -10.71 16 18 C 0.11 5.73 6.65 22.58 0.15 5.88 16 19 O -0.23 -14.40 9.76 -22.70 -0.22 -14.62 16 20 C -0.41 -24.43 9.44 67.92 0.64 -23.79 16 21 H 0.10 5.40 5.30 -2.91 -0.02 5.39 16 22 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 23 N -0.92 -57.35 13.67 21.61 0.30 -57.05 16 24 Si 1.02 43.47 29.55 68.60 2.03 45.50 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 28 C -0.20 -8.47 9.65 22.39 0.22 -8.25 16 29 H 0.06 0.80 6.34 -2.39 -0.02 0.79 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.80 6.58 -2.39 -0.02 0.79 16 32 H 0.07 1.48 7.44 -2.38 -0.02 1.46 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.83 6.37 -2.39 -0.02 0.82 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.91 6.34 -2.39 -0.02 0.89 16 37 H 0.07 0.89 6.48 -2.38 -0.02 0.88 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 1.08 7.46 -2.39 -0.02 1.06 16 43 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 44 H 0.34 9.04 8.46 -89.69 -0.76 8.28 16 45 H 0.09 2.09 8.00 -2.38 -0.02 2.08 16 46 H 0.03 0.88 7.38 -2.39 -0.02 0.86 16 47 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 48 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 49 H 0.12 5.27 5.71 -2.91 -0.02 5.25 16 50 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 51 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -68.12 389.59 4.02 -64.10 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.15 Total: 34.92 kcal Atomic # 6 Polarization: -58.53 SS G_CDS: 4.44 Total: -54.09 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -2.37 Total: -75.80 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.22 Total: -14.62 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.12 4.02 -64.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160339122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.312 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds