Wall clock time and date at job start Tue Mar 31 2020 11:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47150 * 2 1 4 4 C 1.53000 * 109.47352 * 170.83042 * 3 2 1 5 5 C 1.52994 * 109.47348 * 153.37015 * 4 3 2 6 6 N 1.46496 * 109.47411 * 290.83358 * 3 2 1 7 7 C 1.46508 * 119.99988 * 94.00700 * 6 3 2 8 8 C 1.53000 * 109.47030 * 71.55454 * 7 6 3 9 9 C 1.52993 * 109.46843 * 182.10946 * 8 7 6 10 10 C 1.52997 * 109.46933 * 302.10899 * 8 7 6 11 11 C 1.34777 * 120.00001 * 274.00950 * 6 3 2 12 12 O 1.21548 * 119.99941 * 14.01623 * 11 6 3 13 13 C 1.47883 * 119.99846 * 194.01921 * 11 6 3 14 14 C 1.39918 * 120.03002 * 26.34426 * 13 11 6 15 15 C 1.38325 * 120.36311 * 179.74600 * 14 13 11 16 16 C 1.37756 * 120.41056 * 0.55044 * 15 14 13 17 17 C 1.40751 * 120.03820 * 359.70224 * 16 15 14 18 18 C 1.41438 * 120.17860 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00276 * 141.08225 * 18 17 16 20 20 C 1.39934 * 119.99523 * 321.08254 * 18 17 16 21 21 N 1.30836 * 119.99836 * 158.23356 * 20 18 17 22 22 Si 1.86802 * 120.00434 * 338.22577 * 20 18 17 23 23 H 1.48497 * 109.46893 * 89.54515 * 22 20 18 24 24 H 1.48496 * 109.47327 * 209.54457 * 22 20 18 25 25 H 1.48505 * 109.46933 * 329.54671 * 22 20 18 26 26 C 1.38997 * 120.02489 * 206.61526 * 13 11 6 27 27 H 1.08997 * 109.46878 * 73.58181 * 1 2 3 28 28 H 1.08995 * 109.47089 * 193.58005 * 1 2 3 29 29 H 1.08997 * 109.46763 * 313.58082 * 1 2 3 30 30 H 1.08993 * 109.46692 * 239.99971 * 2 1 3 31 31 H 1.09003 * 109.46938 * 120.00017 * 2 1 3 32 32 H 1.09009 * 109.47110 * 50.83242 * 3 2 1 33 33 H 1.09003 * 109.47367 * 273.37611 * 4 3 2 34 34 H 1.09000 * 109.46836 * 33.37443 * 4 3 2 35 35 H 1.08997 * 109.47398 * 307.54865 * 5 4 3 36 36 H 1.08999 * 109.46959 * 67.54717 * 5 4 3 37 37 H 1.08998 * 109.47548 * 187.54397 * 5 4 3 38 38 H 1.08996 * 109.46975 * 311.55322 * 7 6 3 39 39 H 1.09003 * 109.46925 * 191.55488 * 7 6 3 40 40 H 1.09001 * 109.47252 * 62.11202 * 8 7 6 41 41 H 1.08999 * 109.47472 * 60.00261 * 9 8 7 42 42 H 1.09006 * 109.47200 * 180.02562 * 9 8 7 43 43 H 1.09008 * 109.47668 * 300.00113 * 9 8 7 44 44 H 1.08994 * 109.47364 * 305.58582 * 10 8 7 45 45 H 1.08997 * 109.47038 * 65.59194 * 10 8 7 46 46 H 1.09002 * 109.46712 * 185.58652 * 10 8 7 47 47 H 1.08008 * 119.81736 * 359.97438 * 14 13 11 48 48 H 1.08004 * 119.79549 * 180.28033 * 15 14 13 49 49 H 1.08001 * 119.98001 * 179.72719 * 16 15 14 50 50 H 0.96995 * 119.99917 * 180.02562 * 21 20 18 51 51 H 1.08002 * 120.20237 * 359.95510 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5527 1.4486 0.2299 5 6 4.1592 2.7039 -0.4003 6 7 1.7397 2.0666 -1.2908 7 6 0.5120 2.8484 -1.4585 8 6 0.6378 4.1661 -0.6914 9 6 -0.6640 4.9591 -0.8231 10 6 0.9089 3.8726 0.7855 11 6 2.5928 1.9217 -2.3242 12 8 3.4684 1.0800 -2.2760 13 6 2.4635 2.7868 -3.5166 14 6 1.8864 4.0562 -3.4015 15 6 1.7668 4.8731 -4.5113 16 6 2.2041 4.4424 -5.7446 17 6 2.7825 3.1665 -5.8809 18 6 3.2329 2.7215 -7.1456 19 1 4.1463 2.1505 -7.2234 20 6 2.4950 3.0211 -8.2962 21 7 3.0757 3.0046 -9.4685 22 14 0.6808 3.4445 -8.1585 23 1 0.5274 4.9092 -7.9680 24 1 -0.0197 3.0309 -9.4008 25 1 0.0925 2.7299 -6.9972 26 6 2.9102 2.3373 -4.7537 27 1 -0.3633 0.2905 -0.9857 28 1 -0.3633 -0.9989 0.2413 29 1 -0.3633 0.7084 0.7444 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.5492 2.0014 0.7968 33 1 3.7576 1.4441 1.3005 34 1 3.9933 0.5631 -0.2281 35 1 3.8423 2.7777 -1.4405 36 1 3.8208 3.5844 0.1459 37 1 5.2466 2.6441 -0.3551 38 1 -0.3350 2.2820 -1.0715 39 1 0.3562 3.0575 -2.5169 40 1 1.4616 4.7492 -1.1032 41 1 -1.4878 4.3761 -0.4113 42 1 -0.5743 5.8982 -0.2769 43 1 -0.8573 5.1682 -1.8753 44 1 0.1365 3.2076 1.1715 45 1 1.8836 3.3956 0.8881 46 1 0.8999 4.8056 1.3489 47 1 1.5357 4.4015 -2.4401 48 1 1.3240 5.8531 -4.4111 49 1 2.1033 5.0843 -6.6073 50 1 2.5643 3.2127 -10.2660 51 1 3.3530 1.3567 -4.8480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178022513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:27 Heat of formation + Delta-G solvation = 13.964552 kcal Electronic energy + Delta-G solvation = -28867.043252 eV Core-core repulsion = 25346.562175 eV Total energy + Delta-G solvation = -3520.481077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92781 -37.67484 -37.07315 -35.17421 -33.57728 -32.50375 -31.98782 -30.46589 -29.86751 -27.65799 -26.72634 -25.70495 -25.19218 -22.88722 -21.93930 -21.31800 -20.63287 -20.28431 -18.88296 -17.38297 -16.83395 -15.83483 -15.73001 -15.54652 -15.04197 -14.72900 -14.29524 -14.05491 -13.80333 -13.69616 -13.35790 -13.02202 -12.92038 -12.78948 -12.57457 -12.52646 -12.42228 -12.28968 -11.91171 -11.79711 -11.62616 -11.44487 -11.31622 -11.05573 -10.98310 -10.92861 -10.76450 -10.69552 -10.61312 -10.45119 -10.29068 -10.14276 -9.91661 -9.64764 -9.19769 -8.90833 -8.28067 -7.86341 -7.61164 -6.93106 -4.49856 1.96806 2.50689 3.08774 3.16138 3.24393 3.33204 3.54776 3.97339 4.47899 4.71282 4.81893 4.83615 4.98121 5.05067 5.10308 5.26733 5.27511 5.39530 5.43874 5.51075 5.53295 5.55877 5.58909 5.67857 5.74183 5.76016 5.85151 5.91669 5.95278 5.98289 6.02015 6.07358 6.12048 6.17554 6.20053 6.24571 6.32571 6.37345 6.45863 6.54520 6.61694 6.65701 6.74125 6.95720 7.06467 7.26260 7.41818 7.52336 7.77435 7.82224 8.00878 8.35761 8.58096 8.72568 8.78712 10.10538 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.004429 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.524366 B = 6320.303195 C = 6895.560606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.127 3.873 4 C -0.124 4.124 5 C -0.162 4.162 6 N -0.609 5.609 7 C 0.099 3.901 8 C -0.123 4.123 9 C -0.146 4.146 10 C -0.162 4.162 11 C 0.577 3.423 12 O -0.541 6.541 13 C -0.117 4.117 14 C -0.232 4.232 15 C -0.094 4.094 16 C -0.205 4.205 17 C 0.083 3.917 18 C -0.462 4.462 19 H 0.092 0.908 20 C 0.089 3.911 21 N -0.810 5.810 22 Si 0.899 3.101 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.251 1.251 26 C -0.133 4.133 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.130 0.870 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.284 0.716 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 1.470 18.066 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.024 3.976 4 C -0.162 4.162 5 C -0.219 4.219 6 N -0.342 5.342 7 C -0.024 4.024 8 C -0.142 4.142 9 C -0.204 4.204 10 C -0.219 4.219 11 C 0.370 3.630 12 O -0.420 6.420 13 C -0.120 4.120 14 C -0.250 4.250 15 C -0.112 4.112 16 C -0.224 4.224 17 C 0.080 3.920 18 C -0.491 4.491 19 H 0.110 0.890 20 C -0.129 4.129 21 N -0.435 5.435 22 Si 0.724 3.276 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.174 1.174 26 C -0.153 4.153 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.070 0.930 47 H 0.147 0.853 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.094 0.906 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.483 1.000 17.792 19.328 hybrid contribution -0.792 0.286 -0.197 0.865 sum -8.275 1.286 17.596 19.487 Atomic orbital electron populations 1.21816 0.96111 1.01046 1.01692 1.21982 0.95782 0.97181 1.02579 1.21726 0.96409 0.93322 0.86155 1.21752 0.94295 1.00681 0.99476 1.22272 1.00255 0.96387 1.03013 1.47848 1.22539 1.52801 1.11011 1.22125 0.86378 0.90803 1.03112 1.21764 0.99104 0.97164 0.96123 1.21787 0.96675 0.99627 1.02291 1.22319 1.02339 1.01385 0.95814 1.18436 0.80118 0.82113 0.82312 1.90728 1.35309 1.35336 1.80669 1.19569 1.04304 0.95267 0.92852 1.21538 1.08583 0.95423 0.99492 1.20620 0.99468 0.97874 0.93243 1.21405 1.07991 0.96538 0.96481 1.17696 0.90365 0.90508 0.93422 1.19354 1.09421 1.31532 0.88781 0.88984 1.26016 1.00913 0.91362 0.94582 1.69737 1.38293 1.35625 0.99800 0.86463 0.82416 0.80126 0.78595 1.18997 1.21212 1.17425 1.21403 1.03256 0.99214 0.91456 0.92533 0.93135 0.93087 0.91012 0.91744 0.87787 0.92474 0.90047 0.90107 0.93951 0.93359 0.91430 0.87590 0.89285 0.92750 0.92600 0.92068 0.92738 0.90655 0.92985 0.85261 0.88378 0.87806 0.90589 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.81 37.16 0.33 -1.22 16 2 C -0.14 -1.64 5.40 -26.73 -0.14 -1.78 16 3 C 0.13 1.56 1.39 -67.94 -0.09 1.47 16 4 C -0.12 -1.67 4.91 -26.73 -0.13 -1.80 16 5 C -0.16 -2.44 8.71 37.15 0.32 -2.11 16 6 N -0.61 -8.77 1.92 -171.34 -0.33 -9.10 16 7 C 0.10 1.24 4.27 -4.04 -0.02 1.22 16 8 C -0.12 -1.30 2.39 -90.62 -0.22 -1.52 16 9 C -0.15 -1.33 9.19 37.15 0.34 -0.99 16 10 C -0.16 -1.49 7.51 37.16 0.28 -1.21 16 11 C 0.58 10.79 4.28 -12.31 -0.05 10.73 16 12 O -0.54 -11.40 12.97 5.32 0.07 -11.33 16 13 C -0.12 -2.41 5.23 -105.04 -0.55 -2.96 16 14 C -0.23 -4.29 7.51 -38.92 -0.29 -4.59 16 15 C -0.09 -1.85 10.01 -39.73 -0.40 -2.25 16 16 C -0.20 -4.68 7.45 -38.81 -0.29 -4.97 16 17 C 0.08 2.06 4.80 -106.87 -0.51 1.55 16 18 C -0.46 -12.47 9.48 -37.73 -0.36 -12.83 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 20 C 0.09 2.33 5.31 -17.34 -0.09 2.24 16 21 N -0.81 -21.59 13.93 55.55 0.77 -20.81 16 22 Si 0.90 20.19 25.34 -169.99 -4.31 15.88 16 23 H -0.26 -5.72 6.71 56.52 0.38 -5.34 16 24 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.25 -5.74 7.11 56.52 0.40 -5.34 16 26 C -0.13 -3.16 9.33 -38.44 -0.36 -3.51 16 27 H 0.06 0.65 6.97 -51.93 -0.36 0.29 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.45 7.97 -51.93 -0.41 0.04 16 30 H 0.07 1.07 7.79 -51.93 -0.40 0.66 16 31 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.10 1.08 3.77 -51.92 -0.20 0.88 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.28 6.72 -51.93 -0.35 0.93 16 35 H 0.08 1.45 3.46 -59.11 -0.20 1.25 16 36 H 0.04 0.56 7.13 -51.93 -0.37 0.19 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.74 6.10 -51.93 -0.32 0.43 16 39 H 0.11 1.55 5.04 -51.93 -0.26 1.29 16 40 H 0.09 1.09 5.86 -51.93 -0.30 0.79 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.05 0.45 7.73 -51.93 -0.40 0.05 16 45 H 0.07 0.76 3.87 -51.93 -0.20 0.56 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.13 1.99 2.45 -52.48 -0.13 1.86 16 48 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 49 H 0.10 2.38 6.07 -52.49 -0.32 2.07 16 50 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 51 H 0.11 2.71 7.86 -52.49 -0.41 2.30 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -27.72 369.41 -8.49 -36.21 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.03 Total: 8.10 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -2.24 Total: -24.53 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.44 Total: -29.91 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.31 Total: 15.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.72 -8.49 -36.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178022513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.179 kcal (2) G-P(sol) polarization free energy of solvation -27.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds