Wall clock time and date at job start Tue Mar 31 2020 11:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47150 * 2 1 4 4 C 1.53000 * 109.47352 * 170.83042 * 3 2 1 5 5 C 1.52994 * 109.47348 * 153.37015 * 4 3 2 6 6 N 1.46496 * 109.47411 * 290.83358 * 3 2 1 7 7 C 1.46508 * 119.99988 * 94.00700 * 6 3 2 8 8 C 1.53000 * 109.47030 * 71.55454 * 7 6 3 9 9 C 1.52993 * 109.46843 * 182.10946 * 8 7 6 10 10 C 1.52997 * 109.46933 * 302.10899 * 8 7 6 11 11 C 1.34777 * 120.00001 * 274.00950 * 6 3 2 12 12 O 1.21548 * 119.99941 * 14.01623 * 11 6 3 13 13 C 1.47883 * 119.99846 * 194.01921 * 11 6 3 14 14 C 1.39918 * 120.03002 * 26.34426 * 13 11 6 15 15 C 1.38325 * 120.36311 * 179.74600 * 14 13 11 16 16 C 1.37756 * 120.41056 * 0.55044 * 15 14 13 17 17 C 1.40751 * 120.03820 * 359.70224 * 16 15 14 18 18 C 1.41438 * 120.17860 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00276 * 141.08225 * 18 17 16 20 20 C 1.39934 * 119.99523 * 321.08254 * 18 17 16 21 21 N 1.30836 * 119.99836 * 158.23356 * 20 18 17 22 22 Si 1.86802 * 120.00434 * 338.22577 * 20 18 17 23 23 H 1.48497 * 109.46893 * 89.54515 * 22 20 18 24 24 H 1.48496 * 109.47327 * 209.54457 * 22 20 18 25 25 H 1.48505 * 109.46933 * 329.54671 * 22 20 18 26 26 C 1.38997 * 120.02489 * 206.61526 * 13 11 6 27 27 H 1.08997 * 109.46878 * 73.58181 * 1 2 3 28 28 H 1.08995 * 109.47089 * 193.58005 * 1 2 3 29 29 H 1.08997 * 109.46763 * 313.58082 * 1 2 3 30 30 H 1.08993 * 109.46692 * 239.99971 * 2 1 3 31 31 H 1.09003 * 109.46938 * 120.00017 * 2 1 3 32 32 H 1.09009 * 109.47110 * 50.83242 * 3 2 1 33 33 H 1.09003 * 109.47367 * 273.37611 * 4 3 2 34 34 H 1.09000 * 109.46836 * 33.37443 * 4 3 2 35 35 H 1.08997 * 109.47398 * 307.54865 * 5 4 3 36 36 H 1.08999 * 109.46959 * 67.54717 * 5 4 3 37 37 H 1.08998 * 109.47548 * 187.54397 * 5 4 3 38 38 H 1.08996 * 109.46975 * 311.55322 * 7 6 3 39 39 H 1.09003 * 109.46925 * 191.55488 * 7 6 3 40 40 H 1.09001 * 109.47252 * 62.11202 * 8 7 6 41 41 H 1.08999 * 109.47472 * 60.00261 * 9 8 7 42 42 H 1.09006 * 109.47200 * 180.02562 * 9 8 7 43 43 H 1.09008 * 109.47668 * 300.00113 * 9 8 7 44 44 H 1.08994 * 109.47364 * 305.58582 * 10 8 7 45 45 H 1.08997 * 109.47038 * 65.59194 * 10 8 7 46 46 H 1.09002 * 109.46712 * 185.58652 * 10 8 7 47 47 H 1.08008 * 119.81736 * 359.97438 * 14 13 11 48 48 H 1.08004 * 119.79549 * 180.28033 * 15 14 13 49 49 H 1.08001 * 119.98001 * 179.72719 * 16 15 14 50 50 H 0.96995 * 119.99917 * 180.02562 * 21 20 18 51 51 H 1.08002 * 120.20237 * 359.95510 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5527 1.4486 0.2299 5 6 4.1592 2.7039 -0.4003 6 7 1.7397 2.0666 -1.2908 7 6 0.5120 2.8484 -1.4585 8 6 0.6378 4.1661 -0.6914 9 6 -0.6640 4.9591 -0.8231 10 6 0.9089 3.8726 0.7855 11 6 2.5928 1.9217 -2.3242 12 8 3.4684 1.0800 -2.2760 13 6 2.4635 2.7868 -3.5166 14 6 1.8864 4.0562 -3.4015 15 6 1.7668 4.8731 -4.5113 16 6 2.2041 4.4424 -5.7446 17 6 2.7825 3.1665 -5.8809 18 6 3.2329 2.7215 -7.1456 19 1 4.1463 2.1505 -7.2234 20 6 2.4950 3.0211 -8.2962 21 7 3.0757 3.0046 -9.4685 22 14 0.6808 3.4445 -8.1585 23 1 0.5274 4.9092 -7.9680 24 1 -0.0197 3.0309 -9.4008 25 1 0.0925 2.7299 -6.9972 26 6 2.9102 2.3373 -4.7537 27 1 -0.3633 0.2905 -0.9857 28 1 -0.3633 -0.9989 0.2413 29 1 -0.3633 0.7084 0.7444 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.5492 2.0014 0.7968 33 1 3.7576 1.4441 1.3005 34 1 3.9933 0.5631 -0.2281 35 1 3.8423 2.7777 -1.4405 36 1 3.8208 3.5844 0.1459 37 1 5.2466 2.6441 -0.3551 38 1 -0.3350 2.2820 -1.0715 39 1 0.3562 3.0575 -2.5169 40 1 1.4616 4.7492 -1.1032 41 1 -1.4878 4.3761 -0.4113 42 1 -0.5743 5.8982 -0.2769 43 1 -0.8573 5.1682 -1.8753 44 1 0.1365 3.2076 1.1715 45 1 1.8836 3.3956 0.8881 46 1 0.8999 4.8056 1.3489 47 1 1.5357 4.4015 -2.4401 48 1 1.3240 5.8531 -4.4111 49 1 2.1033 5.0843 -6.6073 50 1 2.5643 3.2127 -10.2660 51 1 3.3530 1.3567 -4.8480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178022513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:26 Heat of formation + Delta-G solvation = 0.056921 kcal Electronic energy + Delta-G solvation = -28867.646332 eV Core-core repulsion = 25346.562175 eV Total energy + Delta-G solvation = -3521.084157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.23497 -39.35505 -38.30021 -36.31930 -35.35996 -33.73876 -33.01525 -32.21730 -31.54484 -28.54600 -27.64151 -27.00436 -26.82829 -24.34600 -22.98567 -22.74330 -22.20494 -21.23155 -20.43065 -18.93217 -18.19438 -17.32719 -17.20732 -16.88583 -16.55105 -15.96761 -15.48572 -15.44201 -15.34765 -14.76057 -14.61173 -14.50640 -14.35044 -14.04291 -13.80845 -13.62309 -13.46147 -13.29912 -13.23253 -13.07918 -12.73998 -12.69528 -12.65558 -12.40748 -12.30127 -12.12659 -12.02738 -11.95353 -11.78853 -11.76010 -11.67307 -11.42904 -11.18094 -11.14032 -10.99886 -10.35045 -9.68636 -9.46060 -9.34190 -8.87154 -6.52947 0.26200 0.73323 1.25859 1.38632 1.45322 1.95714 2.10607 2.14423 2.63519 3.39112 3.60272 3.90434 3.90802 3.98105 4.09422 4.15455 4.27915 4.29231 4.35733 4.45631 4.51754 4.53514 4.59944 4.63057 4.66511 4.80498 4.83536 4.87781 4.91606 4.94579 4.95791 5.00045 5.07020 5.12601 5.15592 5.15834 5.20564 5.26639 5.33315 5.36978 5.39941 5.43634 5.45676 5.51465 5.57698 5.70550 5.74398 5.87841 5.89396 6.14914 6.34060 6.52326 6.69377 6.78803 7.31328 8.23345 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.004429 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.524366 B = 6320.303195 C = 6895.560606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.125 3.875 4 C -0.122 4.122 5 C -0.161 4.161 6 N -0.595 5.595 7 C 0.090 3.910 8 C -0.118 4.118 9 C -0.144 4.144 10 C -0.162 4.162 11 C 0.575 3.425 12 O -0.576 6.576 13 C -0.120 4.120 14 C -0.197 4.197 15 C -0.091 4.091 16 C -0.207 4.207 17 C 0.066 3.934 18 C -0.507 4.507 19 H 0.045 0.955 20 C 0.052 3.948 21 N -0.856 5.856 22 Si 0.955 3.045 23 H -0.242 1.242 24 H -0.271 1.271 25 H -0.260 1.260 26 C -0.162 4.162 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.172 0.828 48 H 0.145 0.855 49 H 0.105 0.895 50 H 0.292 0.708 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 4.007 22.589 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.024 3.976 4 C -0.160 4.160 5 C -0.218 4.218 6 N -0.326 5.326 7 C -0.032 4.032 8 C -0.137 4.137 9 C -0.202 4.202 10 C -0.218 4.218 11 C 0.367 3.633 12 O -0.458 6.458 13 C -0.123 4.123 14 C -0.215 4.215 15 C -0.109 4.109 16 C -0.226 4.226 17 C 0.063 3.937 18 C -0.537 4.537 19 H 0.063 0.937 20 C -0.161 4.161 21 N -0.483 5.483 22 Si 0.776 3.224 23 H -0.165 1.165 24 H -0.197 1.197 25 H -0.184 1.184 26 C -0.183 4.183 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.158 0.842 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.188 0.812 48 H 0.163 0.837 49 H 0.123 0.877 50 H 0.103 0.897 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.218 3.553 22.343 25.252 hybrid contribution 0.397 -0.506 -1.288 1.439 sum -10.821 3.047 21.055 23.868 Atomic orbital electron populations 1.21793 0.94411 1.02433 1.01636 1.21962 0.97227 0.96589 1.01653 1.22038 0.96042 0.93998 0.85551 1.21740 0.94834 0.98495 1.00962 1.22216 0.99927 0.98203 1.01439 1.47838 1.21992 1.52199 1.10566 1.22349 0.86019 0.92338 1.02488 1.21678 0.99548 0.95511 0.96939 1.21787 0.95933 1.00145 1.02326 1.22293 1.02344 1.02627 0.94535 1.18175 0.80642 0.81694 0.82738 1.90723 1.37120 1.36644 1.81310 1.19896 1.03128 0.96665 0.92641 1.22151 1.04620 0.93549 1.01137 1.21114 0.98290 0.99754 0.91759 1.21542 1.07506 0.95418 0.98155 1.17737 0.91462 0.91764 0.92688 1.19284 1.09414 1.33959 0.91056 0.93711 1.26740 1.04602 0.91037 0.93736 1.69773 1.39995 1.37966 1.00611 0.85619 0.77133 0.80994 0.78644 1.16545 1.19684 1.18360 1.21311 1.05235 0.98593 0.93135 0.94007 0.92275 0.90482 0.94946 0.89801 0.84211 0.89197 0.93187 0.93270 0.91615 0.94219 0.88931 0.89751 0.90798 0.91362 0.91311 0.92654 0.90952 0.91525 0.91479 0.81189 0.83700 0.87742 0.89740 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.81 71.98 0.63 -1.87 16 2 C -0.14 -2.97 5.40 30.59 0.17 -2.80 16 3 C 0.13 2.73 1.39 44.99 0.06 2.79 16 4 C -0.12 -3.07 4.91 30.59 0.15 -2.92 16 5 C -0.16 -4.61 8.71 71.98 0.63 -3.99 16 6 N -0.59 -15.92 1.92 -814.29 -1.56 -17.48 16 7 C 0.09 1.91 4.27 86.38 0.37 2.28 16 8 C -0.12 -1.89 2.39 -10.80 -0.03 -1.92 16 9 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 10 C -0.16 -1.99 7.51 71.98 0.54 -1.45 16 11 C 0.58 21.73 4.28 86.80 0.37 22.10 16 12 O -0.58 -25.58 12.97 -3.87 -0.05 -25.63 16 13 C -0.12 -5.02 5.23 -20.13 -0.11 -5.13 16 14 C -0.20 -6.81 7.51 22.70 0.17 -6.64 16 15 C -0.09 -3.32 10.01 22.18 0.22 -3.10 16 16 C -0.21 -9.37 7.45 22.77 0.17 -9.20 16 17 C 0.07 3.45 4.80 -21.32 -0.10 3.35 16 18 C -0.51 -29.90 9.48 23.47 0.22 -29.68 16 19 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 20 C 0.05 2.87 5.31 85.25 0.45 3.33 16 21 N -0.86 -48.49 13.93 21.82 0.30 -48.19 16 22 Si 0.96 42.18 25.34 68.60 1.74 43.92 16 23 H -0.24 -9.69 6.71 99.48 0.67 -9.02 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.16 -8.24 9.33 23.01 0.21 -8.02 16 27 H 0.04 0.84 6.97 -2.39 -0.02 0.83 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.94 7.97 -2.39 -0.02 0.92 16 30 H 0.03 0.97 7.79 -2.39 -0.02 0.95 16 31 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 32 H 0.14 2.14 3.77 -2.38 -0.01 2.13 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.58 6.72 -2.39 -0.02 1.56 16 35 H 0.05 1.75 3.46 -9.14 -0.03 1.72 16 36 H 0.06 1.53 7.13 -2.39 -0.02 1.51 16 37 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.59 6.10 -2.39 -0.01 1.57 16 39 H 0.08 2.19 5.04 -2.39 -0.01 2.18 16 40 H 0.07 1.43 5.86 -2.39 -0.01 1.41 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.07 0.68 7.73 -2.39 -0.02 0.66 16 45 H 0.07 0.96 3.87 -2.39 -0.01 0.95 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.17 4.53 2.45 -2.91 -0.01 4.53 16 48 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 49 H 0.10 4.70 6.07 -2.91 -0.02 4.69 16 50 H 0.29 14.78 8.30 -92.71 -0.77 14.01 16 51 H 0.08 4.54 7.86 -2.91 -0.02 4.52 16 Total: -1.00 -68.94 369.41 6.09 -62.84 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.87 Total: 28.56 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 4.80 Total: -44.02 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -1.26 Total: -65.67 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.74 Total: 43.92 kcal Total: -68.94 6.09 -62.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178022513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.898 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds