Wall clock time and date at job start Tue Mar 31 2020 11:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47042 * 2 1 4 4 C 1.53001 * 109.46810 * 240.00469 * 2 1 3 5 5 C 1.50706 * 109.47241 * 59.99556 * 4 2 1 6 6 H 1.08000 * 119.99643 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00000 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46914 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46494 * 120.00279 * 9 7 5 12 12 H 1.48492 * 109.47113 * 240.00427 * 9 7 5 13 13 C 1.52998 * 109.47074 * 120.00479 * 2 1 3 14 14 N 1.46893 * 109.47324 * 309.53605 * 13 2 1 15 15 C 1.46851 * 111.00083 * 82.49824 * 14 13 2 16 16 C 1.53035 * 109.52318 * 174.16163 * 15 14 13 17 17 C 1.53122 * 109.27757 * 59.17938 * 16 15 14 18 18 O 1.42897 * 109.52207 * 62.25174 * 17 16 15 19 19 C 1.50702 * 109.51993 * 182.37743 * 17 16 15 20 20 C 1.38231 * 120.00226 * 29.59568 * 19 17 16 21 21 C 1.38238 * 120.00125 * 179.74433 * 20 19 17 22 22 C 1.38239 * 119.99946 * 0.53098 * 21 20 19 23 23 C 1.38238 * 119.99680 * 359.74948 * 22 21 20 24 24 C 1.38231 * 120.00101 * 209.87395 * 19 17 16 25 25 C 1.53113 * 109.16162 * 302.34267 * 17 16 15 26 26 C 1.46850 * 111.00044 * 318.28874 * 14 13 2 27 27 H 1.08998 * 109.46545 * 307.06119 * 1 2 3 28 28 H 1.08996 * 109.47260 * 67.06033 * 1 2 3 29 29 H 1.09002 * 109.47075 * 187.06462 * 1 2 3 30 30 H 1.08999 * 109.46885 * 144.65421 * 3 2 1 31 31 H 1.08997 * 109.47456 * 264.65509 * 3 2 1 32 32 H 1.09000 * 109.47502 * 24.65888 * 3 2 1 33 33 H 1.08989 * 109.47564 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.46938 * 299.99820 * 4 2 1 35 35 H 0.97005 * 119.99540 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46936 * 189.53413 * 13 2 1 37 37 H 1.08996 * 109.47196 * 69.54098 * 13 2 1 38 38 H 1.08995 * 109.46148 * 54.14048 * 15 14 13 39 39 H 1.09007 * 109.45985 * 294.17602 * 15 14 13 40 40 H 1.08994 * 109.50301 * 299.23780 * 16 15 14 41 41 H 1.09002 * 109.49858 * 179.11906 * 16 15 14 42 42 H 0.96705 * 113.99824 * 179.97438 * 18 17 16 43 43 H 1.08005 * 119.99872 * 0.02562 * 20 19 17 44 44 H 1.08002 * 119.99922 * 180.30079 * 21 20 19 45 45 H 1.07991 * 119.99943 * 179.76947 * 22 21 20 46 46 H 1.07998 * 119.99587 * 180.02562 * 23 22 21 47 47 H 1.08000 * 119.99801 * 359.97438 * 24 19 17 48 48 H 1.08998 * 109.50567 * 177.60043 * 25 17 16 49 49 H 1.09004 * 109.50454 * 297.71928 * 25 17 16 50 50 H 1.09002 * 109.45666 * 305.85203 * 26 14 13 51 51 H 1.08998 * 109.46411 * 65.82451 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4798 6 1 0.9170 0.8676 -2.3805 7 6 1.8710 -0.4814 -3.7321 8 7 2.6271 -1.5506 -3.8528 9 14 1.2487 0.3997 -5.2572 10 1 0.4242 1.5667 -4.8529 11 1 2.4041 0.8665 -6.0650 12 1 0.4239 -0.5333 -6.0660 13 6 2.0401 -0.7213 1.2492 14 7 1.3721 -0.1742 2.4376 15 6 0.0524 -0.7892 2.6294 16 6 -0.5501 -0.3051 3.9503 17 6 -0.6769 1.2205 3.9191 18 8 -1.5670 1.6044 2.8692 19 6 -1.2154 1.7082 5.2394 20 6 -0.9511 1.0009 6.3973 21 6 -1.4407 1.4511 7.6092 22 6 -2.2037 2.6026 7.6616 23 6 -2.4729 3.3067 6.5028 24 6 -1.9785 2.8596 5.2919 25 6 0.7034 1.8345 3.6698 26 6 1.2697 1.2885 2.3571 27 1 -0.3632 0.6193 0.8201 28 1 -0.3633 0.4005 -0.9463 29 1 -0.3633 -1.0199 0.1264 30 1 2.9514 1.5055 0.5945 31 1 2.2514 1.7531 -1.0231 32 1 1.2806 2.0963 0.4287 33 1 3.1299 -0.7216 -1.2492 34 1 1.6766 -1.7489 -1.2494 35 1 2.8614 -1.8819 -4.7339 36 1 3.1167 -0.5763 1.3384 37 1 1.8225 -1.7863 1.1680 38 1 0.1573 -1.8738 2.6539 39 1 -0.6032 -0.5063 1.8058 40 1 0.0981 -0.5996 4.7755 41 1 -1.5363 -0.7496 4.0848 42 1 -1.6948 2.5598 2.7915 43 1 -0.3584 0.0990 6.3559 44 1 -1.2301 0.9012 8.5146 45 1 -2.5893 2.9523 8.6078 46 1 -3.0686 4.2066 6.5439 47 1 -2.1884 3.4099 4.3866 48 1 0.6130 2.9187 3.6041 49 1 1.3714 1.5736 4.4907 50 1 2.2587 1.7127 2.1839 51 1 0.6084 1.5616 1.5349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185641549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:52 Heat of formation + Delta-G solvation = 5.601703 kcal Electronic energy + Delta-G solvation = -28189.252612 eV Core-core repulsion = 24668.408894 eV Total energy + Delta-G solvation = -3520.843717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78250 -39.25416 -37.20475 -34.66649 -32.78478 -31.83718 -31.24378 -30.86699 -29.88064 -27.22391 -26.74410 -26.27196 -23.70399 -23.21155 -22.33433 -22.18558 -21.03041 -19.58757 -18.13470 -17.73621 -16.30124 -16.01361 -15.76316 -15.44674 -15.22942 -15.01241 -14.54213 -14.30718 -14.19300 -13.84486 -13.49768 -13.30347 -13.15649 -12.87420 -12.64544 -12.42731 -12.18595 -12.04125 -11.70918 -11.57008 -11.35071 -11.25412 -11.10613 -10.95719 -10.85056 -10.69937 -10.61068 -10.39713 -10.22362 -10.09788 -9.92624 -9.71430 -9.62653 -9.30061 -9.14740 -8.90028 -8.88033 -8.31909 -7.44029 -5.95946 -3.96070 1.11408 1.17186 3.31833 3.39825 3.43042 3.53142 4.15620 4.39248 4.44240 4.48962 4.57207 4.73681 4.84598 4.86993 4.94751 5.22437 5.31513 5.36367 5.39524 5.51945 5.56948 5.64664 5.67331 5.74110 5.76336 5.81845 5.84469 5.94982 5.97959 6.08133 6.15163 6.24833 6.26605 6.28572 6.32038 6.36415 6.43762 6.46195 6.51765 6.58878 6.72297 6.76089 6.80426 7.15627 7.20305 7.33941 7.54844 7.57002 7.59707 7.72485 7.86365 8.03828 8.48508 9.09464 9.66498 11.15329 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.002908 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.036938 B = 9625.725886 C =10044.077176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.148 4.148 4 C 0.036 3.964 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.534 5.534 15 C 0.026 3.974 16 C -0.097 4.097 17 C 0.174 3.826 18 O -0.546 6.546 19 C -0.100 4.100 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.138 4.138 26 C 0.031 3.969 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.014 0.986 34 H 0.013 0.987 35 H 0.258 0.742 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.370 0.630 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 7.886 22.225 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C -0.204 4.204 4 C -0.002 4.002 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.258 5.258 15 C -0.101 4.101 16 C -0.135 4.135 17 C 0.133 3.867 18 O -0.352 6.352 19 C -0.101 4.101 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.176 4.176 26 C -0.096 4.096 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.218 0.782 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.519 7.002 22.430 24.671 hybrid contribution -0.693 1.164 -1.440 1.978 sum -8.212 8.167 20.989 23.973 Atomic orbital electron populations 1.22387 0.95847 1.00388 1.01699 1.21162 0.95138 0.95790 0.96861 1.22554 0.99067 0.96265 1.02563 1.19112 0.96011 0.94996 0.90042 1.21267 1.30623 1.11870 0.90682 0.92364 1.25019 0.95423 0.95136 0.99036 1.69977 1.37297 1.23197 1.23153 0.86629 0.78603 0.79746 0.83585 1.19823 1.21172 1.21175 1.22399 0.98163 0.98510 0.87361 1.62243 1.19637 1.04727 1.39149 1.22667 0.91342 0.98610 0.97493 1.21644 1.00941 0.91699 0.99217 1.20075 0.88340 0.95555 0.82690 1.86639 1.66952 1.27923 1.53684 1.20621 0.97890 0.95400 0.96157 1.21150 1.00002 0.99879 0.91946 1.21172 0.98080 0.96695 0.97775 1.21149 0.99156 0.95867 0.98273 1.21104 1.00034 0.99886 0.92632 1.20896 0.98191 0.96274 0.97933 1.22334 0.95809 0.99386 1.00085 1.23076 1.01528 0.88934 0.96090 0.92067 0.91924 0.93928 0.94020 0.91397 0.93179 0.96715 0.96876 0.93225 0.91392 0.91665 0.91466 0.90363 0.90230 0.91240 0.78184 0.85497 0.86088 0.86280 0.86153 0.86250 0.91808 0.90747 0.90352 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 6.32 37.16 0.23 -2.55 16 2 C -0.09 -1.73 0.53 -154.51 -0.08 -1.81 16 3 C -0.15 -2.72 7.10 37.15 0.26 -2.45 16 4 C 0.04 0.90 4.00 -27.88 -0.11 0.79 16 5 C -0.51 -13.81 7.09 -34.44 -0.24 -14.05 16 6 H 0.06 1.56 6.16 -52.49 -0.32 1.23 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.06 1.10 4.91 -3.83 -0.02 1.08 16 14 N -0.53 -7.99 4.86 -234.67 -1.14 -9.13 16 15 C 0.03 0.38 4.63 -3.83 -0.02 0.36 16 16 C -0.10 -1.17 4.48 -26.65 -0.12 -1.29 16 17 C 0.17 1.95 0.85 -91.65 -0.08 1.87 16 18 O -0.55 -6.46 10.96 -35.23 -0.39 -6.85 16 19 C -0.10 -1.04 4.85 -104.63 -0.51 -1.55 16 20 C -0.11 -1.09 9.14 -39.58 -0.36 -1.46 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 22 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.11 -1.08 9.32 -39.59 -0.37 -1.44 16 25 C -0.14 -1.59 5.07 -26.65 -0.14 -1.72 16 26 C 0.03 0.43 3.29 -3.83 -0.01 0.41 16 27 H 0.06 1.04 3.17 -51.93 -0.16 0.88 16 28 H 0.06 1.32 6.42 -51.93 -0.33 0.99 16 29 H 0.04 0.81 7.24 -51.93 -0.38 0.44 16 30 H 0.04 0.71 6.25 -51.93 -0.32 0.38 16 31 H 0.07 1.43 6.36 -51.93 -0.33 1.10 16 32 H 0.05 0.82 5.09 -51.93 -0.26 0.55 16 33 H 0.01 0.40 8.14 -51.94 -0.42 -0.03 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 37 H 0.06 1.17 7.72 -51.93 -0.40 0.77 16 38 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 39 H 0.08 1.23 3.37 -51.93 -0.18 1.06 16 40 H 0.08 0.88 6.38 -51.93 -0.33 0.55 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.37 3.21 7.33 45.56 0.33 3.54 16 43 H 0.13 1.14 6.11 -52.48 -0.32 0.82 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.12 0.91 6.49 -52.49 -0.34 0.57 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 1.12 6.03 -51.93 -0.31 0.81 16 51 H 0.08 1.20 2.38 -51.93 -0.12 1.07 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -30.46 362.65 -10.32 -40.78 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.13 Total: 5.88 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.85 Total: -26.64 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.40 Total: -35.26 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.39 Total: -6.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.46 -10.32 -40.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185641549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.379 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds