Wall clock time and date at job start Tue Mar 31 2020 11:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47042 * 2 1 4 4 C 1.53001 * 109.46810 * 240.00469 * 2 1 3 5 5 C 1.50706 * 109.47241 * 59.99556 * 4 2 1 6 6 H 1.08000 * 119.99643 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00000 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46914 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46494 * 120.00279 * 9 7 5 12 12 H 1.48492 * 109.47113 * 240.00427 * 9 7 5 13 13 C 1.52998 * 109.47074 * 120.00479 * 2 1 3 14 14 N 1.46893 * 109.47324 * 309.53605 * 13 2 1 15 15 C 1.46851 * 111.00083 * 82.49824 * 14 13 2 16 16 C 1.53035 * 109.52318 * 174.16163 * 15 14 13 17 17 C 1.53122 * 109.27757 * 59.17938 * 16 15 14 18 18 O 1.42897 * 109.52207 * 62.25174 * 17 16 15 19 19 C 1.50702 * 109.51993 * 182.37743 * 17 16 15 20 20 C 1.38231 * 120.00226 * 29.59568 * 19 17 16 21 21 C 1.38238 * 120.00125 * 179.74433 * 20 19 17 22 22 C 1.38239 * 119.99946 * 0.53098 * 21 20 19 23 23 C 1.38238 * 119.99680 * 359.74948 * 22 21 20 24 24 C 1.38231 * 120.00101 * 209.87395 * 19 17 16 25 25 C 1.53113 * 109.16162 * 302.34267 * 17 16 15 26 26 C 1.46850 * 111.00044 * 318.28874 * 14 13 2 27 27 H 1.08998 * 109.46545 * 307.06119 * 1 2 3 28 28 H 1.08996 * 109.47260 * 67.06033 * 1 2 3 29 29 H 1.09002 * 109.47075 * 187.06462 * 1 2 3 30 30 H 1.08999 * 109.46885 * 144.65421 * 3 2 1 31 31 H 1.08997 * 109.47456 * 264.65509 * 3 2 1 32 32 H 1.09000 * 109.47502 * 24.65888 * 3 2 1 33 33 H 1.08989 * 109.47564 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.46938 * 299.99820 * 4 2 1 35 35 H 0.97005 * 119.99540 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46936 * 189.53413 * 13 2 1 37 37 H 1.08996 * 109.47196 * 69.54098 * 13 2 1 38 38 H 1.08995 * 109.46148 * 54.14048 * 15 14 13 39 39 H 1.09007 * 109.45985 * 294.17602 * 15 14 13 40 40 H 1.08994 * 109.50301 * 299.23780 * 16 15 14 41 41 H 1.09002 * 109.49858 * 179.11906 * 16 15 14 42 42 H 0.96705 * 113.99824 * 179.97438 * 18 17 16 43 43 H 1.08005 * 119.99872 * 0.02562 * 20 19 17 44 44 H 1.08002 * 119.99922 * 180.30079 * 21 20 19 45 45 H 1.07991 * 119.99943 * 179.76947 * 22 21 20 46 46 H 1.07998 * 119.99587 * 180.02562 * 23 22 21 47 47 H 1.08000 * 119.99801 * 359.97438 * 24 19 17 48 48 H 1.08998 * 109.50567 * 177.60043 * 25 17 16 49 49 H 1.09004 * 109.50454 * 297.71928 * 25 17 16 50 50 H 1.09002 * 109.45666 * 305.85203 * 26 14 13 51 51 H 1.08998 * 109.46411 * 65.82451 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4798 6 1 0.9170 0.8676 -2.3805 7 6 1.8710 -0.4814 -3.7321 8 7 2.6271 -1.5506 -3.8528 9 14 1.2487 0.3997 -5.2572 10 1 0.4242 1.5667 -4.8529 11 1 2.4041 0.8665 -6.0650 12 1 0.4239 -0.5333 -6.0660 13 6 2.0401 -0.7213 1.2492 14 7 1.3721 -0.1742 2.4376 15 6 0.0524 -0.7892 2.6294 16 6 -0.5501 -0.3051 3.9503 17 6 -0.6769 1.2205 3.9191 18 8 -1.5670 1.6044 2.8692 19 6 -1.2154 1.7082 5.2394 20 6 -0.9511 1.0009 6.3973 21 6 -1.4407 1.4511 7.6092 22 6 -2.2037 2.6026 7.6616 23 6 -2.4729 3.3067 6.5028 24 6 -1.9785 2.8596 5.2919 25 6 0.7034 1.8345 3.6698 26 6 1.2697 1.2885 2.3571 27 1 -0.3632 0.6193 0.8201 28 1 -0.3633 0.4005 -0.9463 29 1 -0.3633 -1.0199 0.1264 30 1 2.9514 1.5055 0.5945 31 1 2.2514 1.7531 -1.0231 32 1 1.2806 2.0963 0.4287 33 1 3.1299 -0.7216 -1.2492 34 1 1.6766 -1.7489 -1.2494 35 1 2.8614 -1.8819 -4.7339 36 1 3.1167 -0.5763 1.3384 37 1 1.8225 -1.7863 1.1680 38 1 0.1573 -1.8738 2.6539 39 1 -0.6032 -0.5063 1.8058 40 1 0.0981 -0.5996 4.7755 41 1 -1.5363 -0.7496 4.0848 42 1 -1.6948 2.5598 2.7915 43 1 -0.3584 0.0990 6.3559 44 1 -1.2301 0.9012 8.5146 45 1 -2.5893 2.9523 8.6078 46 1 -3.0686 4.2066 6.5439 47 1 -2.1884 3.4099 4.3866 48 1 0.6130 2.9187 3.6041 49 1 1.3714 1.5736 4.4907 50 1 2.2587 1.7127 2.1839 51 1 0.6084 1.5616 1.5349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185641549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:51 Heat of formation + Delta-G solvation = -13.014194 kcal Electronic energy + Delta-G solvation = -28190.059858 eV Core-core repulsion = 24668.408894 eV Total energy + Delta-G solvation = -3521.650963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83095 -40.24283 -38.19263 -36.08083 -34.42912 -33.11669 -32.21402 -31.62583 -30.89544 -29.07260 -28.21968 -27.67442 -25.10427 -24.11757 -23.85121 -23.02315 -21.93608 -20.59947 -19.77968 -18.57309 -18.19632 -17.10450 -16.71701 -16.54424 -16.46611 -16.16971 -16.02755 -15.34593 -15.22937 -14.77509 -14.67028 -14.62903 -14.30178 -14.12527 -13.93864 -13.69625 -13.56310 -13.19503 -12.97636 -12.79221 -12.72607 -12.56167 -12.46748 -12.33758 -12.25874 -12.17133 -11.93336 -11.78855 -11.68687 -11.49521 -11.29363 -11.18010 -11.09340 -10.82736 -10.65340 -10.52247 -9.78421 -9.57735 -8.79170 -8.14391 -6.21977 0.45541 0.53535 1.37937 1.38927 1.50932 2.42015 2.87184 3.11343 3.18258 3.46710 3.60686 3.79168 3.88645 4.08725 4.14231 4.18363 4.19563 4.23843 4.31216 4.36878 4.54572 4.56742 4.67221 4.67444 4.72972 4.76603 4.81361 4.90162 4.93395 4.96621 4.99020 5.04960 5.06984 5.13647 5.16384 5.19221 5.20877 5.27358 5.36132 5.49370 5.53888 5.60378 5.61518 5.65428 5.66366 5.72568 5.85168 5.91266 6.14097 6.24695 6.33429 6.36522 6.84979 6.92783 7.44815 8.97025 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.002908 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.036938 B = 9625.725886 C =10044.077176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.140 4.140 4 C 0.043 3.957 5 C -0.511 4.511 6 H 0.063 0.937 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.071 3.929 14 N -0.527 5.527 15 C 0.026 3.974 16 C -0.094 4.094 17 C 0.181 3.819 18 O -0.562 6.562 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.130 4.130 26 C 0.030 3.970 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.076 0.924 33 H -0.014 1.014 34 H -0.019 1.019 35 H 0.259 0.741 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.384 0.616 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.133 0.867 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 10.021 24.032 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.083 4.083 3 C -0.197 4.197 4 C 0.005 3.995 5 C -0.549 4.549 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.209 1.209 13 C -0.057 4.057 14 N -0.250 5.250 15 C -0.102 4.102 16 C -0.131 4.131 17 C 0.140 3.860 18 O -0.370 6.370 19 C -0.114 4.114 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.168 4.168 26 C -0.097 4.097 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.004 0.996 34 H -0.001 1.001 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.234 0.766 43 H 0.147 0.853 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.151 0.849 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.838 9.161 24.253 27.391 hybrid contribution -0.305 0.483 -1.927 2.010 sum -9.142 9.644 22.326 25.982 Atomic orbital electron populations 1.22309 0.95109 1.00303 1.01406 1.21054 0.95597 0.96378 0.95249 1.22500 1.00526 0.95449 1.01183 1.18992 0.94084 0.93836 0.92586 1.21609 1.30013 1.11770 0.91504 0.91879 1.25918 0.95760 0.95947 1.02551 1.70116 1.38867 1.24923 1.23942 0.85541 0.78149 0.78800 0.79453 1.18534 1.20712 1.20897 1.22213 0.98304 0.97789 0.87406 1.62283 1.20060 1.05637 1.36997 1.22656 0.90540 0.98563 0.98414 1.21617 1.00897 0.92695 0.97926 1.19932 0.88122 0.94684 0.83271 1.86603 1.67067 1.29386 1.53990 1.20545 0.98985 0.96246 0.95607 1.21302 1.00479 1.00198 0.92371 1.21444 0.97884 0.97062 0.98107 1.21490 0.98585 0.95545 0.99251 1.21416 0.99960 1.00575 0.92425 1.21135 0.97994 0.96153 0.98981 1.22268 0.95838 1.00340 0.98377 1.23056 1.01392 0.87896 0.97347 0.89463 0.94201 0.94722 0.92676 0.94278 0.90573 0.99565 1.00080 0.93174 0.91564 0.92758 0.91828 0.91901 0.89242 0.91172 0.76621 0.85253 0.84372 0.84206 0.84229 0.84879 0.90036 0.90680 0.90449 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 6.32 71.98 0.45 -4.69 16 2 C -0.08 -3.24 0.53 -52.18 -0.03 -3.27 16 3 C -0.14 -5.07 7.10 71.98 0.51 -4.56 16 4 C 0.04 2.24 4.00 29.85 0.12 2.36 16 5 C -0.51 -28.55 7.09 25.60 0.18 -28.37 16 6 H 0.06 3.41 6.16 -2.91 -0.02 3.39 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 9 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.07 2.51 4.91 86.30 0.42 2.93 16 14 N -0.53 -15.26 4.86 -896.36 -4.35 -19.61 16 15 C 0.03 0.71 4.63 86.32 0.40 1.11 16 16 C -0.09 -2.11 4.48 30.65 0.14 -1.97 16 17 C 0.18 3.66 0.85 -11.46 -0.01 3.65 16 18 O -0.56 -12.09 10.96 -148.98 -1.63 -13.72 16 19 C -0.11 -2.09 4.85 -19.87 -0.10 -2.19 16 20 C -0.13 -2.20 9.14 22.27 0.20 -2.00 16 21 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 22 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 23 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 24 C -0.12 -2.01 9.32 22.27 0.21 -1.80 16 25 C -0.13 -2.66 5.07 30.64 0.16 -2.51 16 26 C 0.03 0.77 3.29 86.33 0.28 1.06 16 27 H 0.09 2.88 3.17 -2.39 -0.01 2.87 16 28 H 0.04 1.68 6.42 -2.39 -0.02 1.66 16 29 H 0.03 1.34 7.24 -2.39 -0.02 1.33 16 30 H 0.05 1.83 6.25 -2.39 -0.01 1.81 16 31 H 0.04 1.63 6.36 -2.39 -0.02 1.62 16 32 H 0.08 2.36 5.09 -2.39 -0.01 2.35 16 33 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 35 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 36 H 0.07 2.35 7.88 -2.38 -0.02 2.33 16 37 H 0.05 2.01 7.72 -2.39 -0.02 2.00 16 38 H 0.06 1.79 7.92 -2.39 -0.02 1.77 16 39 H 0.06 1.94 3.37 -2.38 -0.01 1.94 16 40 H 0.09 1.83 6.38 -2.39 -0.02 1.81 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.38 5.65 7.33 -74.05 -0.54 5.11 16 43 H 0.13 2.09 6.11 -2.91 -0.02 2.07 16 44 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 45 H 0.14 1.27 8.06 -2.92 -0.02 1.24 16 46 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 47 H 0.13 1.65 6.49 -2.91 -0.02 1.63 16 48 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 49 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 50 H 0.08 2.03 6.03 -2.39 -0.01 2.02 16 51 H 0.07 1.92 2.38 -2.39 -0.01 1.92 16 Total: -1.00 -66.75 362.65 0.81 -65.95 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.40 Total: 22.90 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 4.08 Total: -44.89 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -4.07 Total: -77.18 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.63 Total: -13.72 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.75 0.81 -65.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185641549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.933 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds