Wall clock time and date at job start Tue Mar 31 2020 11:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32996 * 119.99979 * 2 1 4 4 C 1.50698 * 120.00341 * 0.02562 * 3 2 1 5 5 C 1.47100 * 119.99890 * 180.02562 * 3 2 1 6 6 O 1.21610 * 120.00400 * 243.51719 * 5 3 2 7 7 N 1.34780 * 120.00021 * 63.51433 * 5 3 2 8 8 C 1.46495 * 120.00182 * 9.02822 * 7 5 3 9 9 C 1.50697 * 109.47348 * 281.47670 * 8 7 5 10 10 H 1.07997 * 119.99786 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00023 * 179.72549 * 9 8 7 12 12 N 1.31518 * 120.00337 * 0.26774 * 11 9 8 13 13 Si 1.86805 * 120.00042 * 180.27385 * 11 9 8 14 14 H 1.48496 * 109.46973 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.46938 * 119.99758 * 13 11 9 16 16 H 1.48492 * 109.47213 * 239.99771 * 13 11 9 17 17 C 1.46498 * 119.99997 * 189.03215 * 7 5 3 18 18 C 1.52999 * 109.47578 * 119.04379 * 17 7 5 19 19 C 1.53005 * 109.47589 * 179.97438 * 18 17 7 20 20 C 1.52998 * 109.47114 * 300.00503 * 19 18 17 21 21 C 1.52999 * 109.47303 * 59.99322 * 20 19 18 22 22 C 1.53006 * 109.46773 * 60.00301 * 21 20 19 23 23 C 1.52998 * 109.46960 * 299.99909 * 22 21 20 24 24 C 1.52995 * 109.47533 * 59.99929 * 23 22 21 25 25 C 1.53005 * 109.47114 * 299.99738 * 23 22 21 26 26 C 1.52991 * 109.47636 * 300.00419 * 21 20 19 27 27 H 1.08998 * 109.46755 * 300.00174 * 1 2 3 28 28 H 1.08997 * 109.47033 * 59.99597 * 1 2 3 29 29 H 1.08995 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00232 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46861 * 300.07894 * 4 3 2 32 32 H 1.09005 * 109.46899 * 60.07220 * 4 3 2 33 33 H 1.08994 * 109.46984 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47265 * 161.47416 * 8 7 5 35 35 H 1.09007 * 109.46774 * 41.47895 * 8 7 5 36 36 H 0.96996 * 120.00004 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47481 * 300.00343 * 18 17 7 38 38 H 1.09000 * 109.46866 * 60.00230 * 18 17 7 39 39 H 1.08998 * 109.46842 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.46737 * 299.99644 * 20 19 18 41 41 H 1.08995 * 109.47132 * 179.97438 * 20 19 18 42 42 H 1.09000 * 109.47481 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.47183 * 179.97438 * 22 21 20 44 44 H 1.08995 * 109.47198 * 59.99869 * 22 21 20 45 45 H 1.09000 * 109.47232 * 180.02562 * 23 22 21 46 46 H 1.09009 * 109.46787 * 59.99946 * 24 23 22 47 47 H 1.09001 * 109.47232 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47265 * 300.00198 * 25 23 22 49 49 H 1.09000 * 109.47190 * 179.97438 * 25 23 22 50 50 H 1.09006 * 109.47252 * 299.99706 * 26 21 20 51 51 H 1.09001 * 109.47608 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4186 2.4569 0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2515 1.6212 0.9419 7 7 4.3165 0.6314 -1.0457 8 6 3.5972 0.2476 -2.2628 9 6 2.9182 -1.0804 -2.0474 10 1 3.0134 -1.5879 -1.0989 11 6 2.1713 -1.6450 -3.0595 12 7 2.0557 -1.0271 -4.2147 13 14 1.3234 -3.2875 -2.7899 14 1 1.6081 -3.7718 -1.4153 15 1 -0.1422 -3.1223 -2.9635 16 1 1.8306 -4.2743 -3.7768 17 6 5.7679 0.4496 -0.9645 18 6 6.1055 -1.0346 -1.1190 19 6 7.6214 -1.2245 -1.0348 20 6 8.2978 -0.4285 -2.1527 21 6 7.9602 1.0558 -1.9982 22 6 8.4621 1.5544 -0.6415 23 6 7.7856 0.7584 0.4764 24 6 8.1231 -0.7259 0.3219 25 6 6.2697 0.9482 0.3922 26 6 6.4445 1.2456 -2.0823 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 2.0471 -0.9353 -0.0004 31 1 0.7905 2.5142 -0.8884 32 1 0.7932 2.5150 0.8915 33 1 2.1269 3.2853 0.0000 34 1 4.3016 0.1655 -3.0906 35 1 2.8486 1.0048 -2.4965 36 1 1.5306 -1.4245 -4.9269 37 1 5.6232 -1.6018 -0.3229 38 1 5.7484 -1.3897 -2.0857 39 1 7.8617 -2.2819 -1.1445 40 1 7.9403 -0.7837 -3.1192 41 1 9.3777 -0.5633 -2.0925 42 1 8.4425 1.6230 -2.7943 43 1 8.2220 2.6118 -0.5315 44 1 9.5420 1.4192 -0.5815 45 1 8.1428 1.1138 1.4429 46 1 9.2031 -0.8611 0.3819 47 1 7.6415 -1.2929 1.1186 48 1 6.0293 2.0056 0.5024 49 1 5.7877 0.3807 1.1883 50 1 6.0869 0.8904 -3.0489 51 1 6.2040 2.3031 -1.9727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187050708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:41 Heat of formation + Delta-G solvation = -29.932694 kcal Electronic energy + Delta-G solvation = -29832.843854 eV Core-core repulsion = 26310.459249 eV Total energy + Delta-G solvation = -3522.384605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.32448 -38.74936 -35.13033 -34.80749 -32.65043 -32.29087 -32.17333 -30.51555 -28.65648 -27.05542 -25.60956 -25.47849 -25.39310 -22.88417 -21.72949 -21.10281 -21.02090 -19.43091 -17.40234 -17.13109 -16.23054 -15.79429 -15.66353 -14.55122 -14.43026 -14.13935 -14.09008 -13.88567 -13.74393 -13.21028 -13.10065 -12.95377 -12.81942 -12.56994 -12.37895 -12.23598 -12.09250 -11.92287 -11.80277 -11.72934 -11.50580 -11.32620 -11.06776 -10.87396 -10.77733 -10.63882 -10.61402 -10.48637 -10.34764 -10.28508 -10.15012 -9.86532 -9.60537 -9.26309 -9.17874 -8.58125 -8.20364 -7.91893 -7.52665 -6.17443 -4.19578 2.64603 3.18550 3.28232 3.30116 3.69287 4.03497 4.32433 4.84091 4.86693 5.03388 5.17169 5.39062 5.44779 5.48807 5.58195 5.58697 5.62716 5.68066 5.71193 5.77118 5.82158 5.86312 5.91344 5.98996 5.99735 6.04743 6.12146 6.13490 6.25577 6.27204 6.28046 6.31841 6.39085 6.44702 6.45693 6.48173 6.55813 6.57703 6.62185 6.64174 6.72835 6.91888 6.93868 7.03654 7.10493 7.23926 7.37772 7.50016 7.71294 7.81345 8.10132 8.44254 8.82382 9.17773 9.42863 10.89185 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.006054 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.079053 B = 4623.686275 C = 5759.541358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 C -0.196 4.196 4 C -0.088 4.088 5 C 0.562 3.438 6 O -0.570 6.570 7 N -0.588 5.588 8 C 0.243 3.757 9 C -0.519 4.519 10 H 0.064 0.936 11 C 0.067 3.933 12 N -0.888 5.888 13 Si 0.884 3.116 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.284 1.284 17 C 0.184 3.816 18 C -0.110 4.110 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.081 4.081 22 C -0.105 4.105 23 C -0.097 4.097 24 C -0.106 4.106 25 C -0.087 4.087 26 C -0.116 4.116 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 2.545 4.838 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.095 4.095 3 C -0.199 4.199 4 C -0.145 4.145 5 C 0.352 3.648 6 O -0.452 6.452 7 N -0.316 5.316 8 C 0.123 3.877 9 C -0.557 4.557 10 H 0.082 0.918 11 C -0.135 4.135 12 N -0.526 5.526 13 Si 0.711 3.289 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.210 1.210 17 C 0.099 3.901 18 C -0.148 4.148 19 C -0.103 4.103 20 C -0.144 4.144 21 C -0.100 4.100 22 C -0.143 4.143 23 C -0.116 4.116 24 C -0.144 4.144 25 C -0.124 4.124 26 C -0.155 4.155 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.299 2.768 5.094 9.321 hybrid contribution -0.639 -1.135 -0.305 1.337 sum 6.660 1.633 4.788 8.364 Atomic orbital electron populations 1.20821 0.93782 1.01774 1.01308 1.23527 0.95290 0.98145 0.92506 1.20967 0.92843 0.96060 1.09991 1.20438 0.98927 0.94175 1.01004 1.18482 0.87729 0.76755 0.81803 1.90708 1.69027 1.48351 1.37120 1.48321 1.06182 1.60438 1.16679 1.19296 0.91716 0.95541 0.81143 1.21577 1.30295 1.04609 0.99268 0.91775 1.24858 0.96434 0.97266 0.94987 1.69927 1.40358 1.38568 1.03750 0.86655 0.79583 0.84149 0.78476 1.19581 1.20785 1.20983 1.20208 0.80072 0.94438 0.95388 1.21828 0.93879 0.95764 1.03367 1.21063 0.95737 0.98759 0.94723 1.21531 0.99322 0.94882 0.98644 1.21012 0.95739 0.96157 0.97076 1.21526 0.98871 0.99204 0.94671 1.21332 0.97592 0.94914 0.97785 1.21542 0.99653 0.96111 0.97071 1.22068 0.91578 1.03311 0.95475 1.21885 0.94179 0.99979 0.99438 0.92228 0.91310 0.92578 0.85278 0.91895 0.92361 0.92899 0.94395 0.95028 0.92715 0.92196 0.90349 0.91599 0.91893 0.92533 0.91623 0.92331 0.92682 0.91804 0.92788 0.92354 0.89857 0.91294 0.91221 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.16 36.01 0.33 -1.63 16 2 C -0.08 -1.48 7.70 -36.13 -0.28 -1.76 16 3 C -0.20 -3.89 4.56 -102.85 -0.47 -4.36 16 4 C -0.09 -1.49 9.04 36.00 0.33 -1.17 16 5 C 0.56 12.09 6.79 -12.66 -0.09 12.01 16 6 O -0.57 -12.84 12.41 5.27 0.07 -12.78 16 7 N -0.59 -12.31 2.39 -161.55 -0.39 -12.70 16 8 C 0.24 5.63 4.06 -5.20 -0.02 5.61 16 9 C -0.52 -12.55 6.06 -34.44 -0.21 -12.76 16 10 H 0.06 1.58 5.79 -52.49 -0.30 1.27 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -23.68 13.29 55.43 0.74 -22.95 16 13 Si 0.88 19.79 29.54 -169.99 -5.02 14.77 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.18 3.39 0.84 -131.82 -0.11 3.28 16 18 C -0.11 -1.97 4.26 -26.73 -0.11 -2.08 16 19 C -0.08 -1.23 3.20 -90.62 -0.29 -1.51 16 20 C -0.11 -1.44 5.19 -26.73 -0.14 -1.58 16 21 C -0.08 -1.13 3.19 -90.62 -0.29 -1.42 16 22 C -0.11 -1.40 5.19 -26.73 -0.14 -1.54 16 23 C -0.10 -1.42 3.19 -90.62 -0.29 -1.71 16 24 C -0.11 -1.46 5.19 -26.73 -0.14 -1.60 16 25 C -0.09 -1.56 2.84 -26.73 -0.08 -1.63 16 26 C -0.12 -1.97 4.45 -26.73 -0.12 -2.09 16 27 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 28 H 0.07 1.14 7.86 -51.93 -0.41 0.73 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.13 2.75 5.26 -52.48 -0.28 2.47 16 31 H 0.06 1.02 7.86 -51.93 -0.41 0.61 16 32 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 33 H 0.05 0.89 7.99 -51.93 -0.41 0.48 16 34 H 0.04 0.93 6.33 -51.93 -0.33 0.60 16 35 H 0.03 0.80 7.59 -51.93 -0.39 0.41 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.56 7.43 -51.93 -0.39 1.17 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 1.65 6.46 -51.93 -0.34 1.32 16 49 H 0.07 1.38 6.91 -51.93 -0.36 1.03 16 50 H 0.07 1.26 6.67 -51.93 -0.35 0.91 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -26.41 367.21 -10.27 -36.67 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.99 Total: 5.81 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.21 Total: -14.36 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.35 Total: -35.64 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.41 -10.27 -36.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187050708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.738 kcal (2) G-P(sol) polarization free energy of solvation -26.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds