Wall clock time and date at job start Tue Mar 31 2020 11:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47402 * 2 1 4 4 C 1.53003 * 109.47031 * 294.50962 * 3 2 1 5 5 C 1.53006 * 109.46966 * 174.51482 * 3 2 1 6 6 N 1.46495 * 109.47632 * 54.51382 * 3 2 1 7 7 C 1.46503 * 120.00250 * 253.07235 * 6 3 2 8 8 C 1.50697 * 109.46840 * 269.99738 * 7 6 3 9 9 H 1.08004 * 120.00236 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99923 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00228 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99951 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47462 * 89.99762 * 12 10 8 14 14 H 1.48503 * 109.46919 * 210.00187 * 12 10 8 15 15 H 1.48509 * 109.47159 * 329.99754 * 12 10 8 16 16 C 1.34777 * 119.99920 * 73.06222 * 6 3 2 17 17 O 1.21280 * 120.00212 * 186.59484 * 16 6 3 18 18 C 1.50696 * 120.00069 * 6.59798 * 16 6 3 19 19 C 1.53005 * 109.47450 * 187.26004 * 18 16 6 20 20 C 1.50698 * 109.47335 * 179.97438 * 19 18 16 21 21 C 1.38258 * 120.00211 * 270.21492 * 20 19 18 22 22 C 1.38220 * 119.99682 * 180.25400 * 21 20 19 23 23 C 1.38252 * 119.99806 * 359.51477 * 22 21 20 24 24 C 1.38211 * 120.00362 * 0.26937 * 23 22 21 25 25 C 1.50697 * 120.00213 * 179.97438 * 24 23 22 26 26 C 1.38211 * 119.99568 * 90.00033 * 20 19 18 27 27 H 1.09004 * 109.47427 * 300.00648 * 1 2 3 28 28 H 1.09007 * 109.47109 * 60.00360 * 1 2 3 29 29 H 1.08999 * 109.47739 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47014 * 239.99432 * 2 1 3 31 31 H 1.09007 * 109.46919 * 120.00159 * 2 1 3 32 32 H 1.08999 * 109.46923 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47401 * 300.00232 * 4 3 2 34 34 H 1.09000 * 109.46555 * 60.00484 * 4 3 2 35 35 H 1.08995 * 109.47435 * 323.47579 * 5 3 2 36 36 H 1.08999 * 109.47207 * 83.48407 * 5 3 2 37 37 H 1.09002 * 109.46674 * 203.48002 * 5 3 2 38 38 H 1.08999 * 109.46610 * 29.99385 * 7 6 3 39 39 H 1.09000 * 109.47352 * 149.98920 * 7 6 3 40 40 H 0.96991 * 120.00062 * 179.97438 * 11 10 8 41 41 H 1.08998 * 109.47684 * 67.26116 * 18 16 6 42 42 H 1.08999 * 109.47339 * 307.26056 * 18 16 6 43 43 H 1.09004 * 109.46368 * 59.99849 * 19 18 16 44 44 H 1.08999 * 109.46892 * 300.00326 * 19 18 16 45 45 H 1.07995 * 119.99883 * 0.04558 * 21 20 19 46 46 H 1.07994 * 119.99758 * 179.78832 * 22 21 20 47 47 H 1.08004 * 119.99605 * 180.25618 * 23 22 21 48 48 H 1.09001 * 109.47636 * 90.00112 * 25 24 23 49 49 H 1.08999 * 109.47503 * 210.00731 * 25 24 23 50 50 H 1.09008 * 109.47203 * 330.00710 * 25 24 23 51 51 H 1.08004 * 120.00367 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6458 2.1227 -1.3126 5 6 3.5638 1.4445 0.1379 6 7 1.4469 2.1702 1.1246 7 6 0.4021 3.1681 0.8821 8 6 1.0367 4.5184 0.6701 9 1 2.1109 4.6229 0.7123 10 6 0.2461 5.6205 0.4224 11 7 0.7999 6.7990 0.2379 12 14 -1.6117 5.4399 0.3501 13 1 -2.1821 5.6451 1.7058 14 1 -2.1716 6.4523 -0.5810 15 1 -1.9584 4.0787 -0.1320 16 6 1.8624 1.9216 2.3824 17 8 1.2916 2.4337 3.3220 18 6 3.0361 1.0072 2.6214 19 6 3.1862 0.7514 4.1224 20 6 4.3596 -0.1635 4.3613 21 6 4.1760 -1.5337 4.3768 22 6 5.2514 -2.3726 4.6011 23 6 6.5124 -1.8418 4.8000 24 6 6.6967 -0.4721 4.7801 25 6 8.0711 0.1064 4.9974 26 6 5.6202 0.3672 4.5605 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.0088 3.1505 -1.3123 33 1 2.0871 1.5813 -2.1493 34 1 0.5602 2.1212 -1.4107 35 1 3.8693 0.6391 0.8057 36 1 4.0175 1.2959 -0.8420 37 1 3.8901 2.4002 0.5482 38 1 -0.1664 2.8905 -0.0055 39 1 -0.2657 3.2114 1.7424 40 1 0.2437 7.5742 0.0632 41 1 3.9442 1.4741 2.2399 42 1 2.8704 0.0609 2.1064 43 1 2.2782 0.2844 4.5038 44 1 3.3520 1.6977 4.6374 45 1 3.1917 -1.9484 4.2170 46 1 5.1073 -3.4427 4.6166 47 1 7.3534 -2.4974 4.9712 48 1 8.5788 0.2075 4.0382 49 1 7.9829 1.0862 5.4669 50 1 8.6461 -0.5561 5.6446 51 1 5.7642 1.4374 4.5453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189946500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:20 Heat of formation + Delta-G solvation = -15.224074 kcal Electronic energy + Delta-G solvation = -27812.707025 eV Core-core repulsion = 24290.960234 eV Total energy + Delta-G solvation = -3521.746791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.13391 -39.35277 -36.87487 -34.45632 -33.14982 -32.36454 -31.77532 -30.64346 -29.78301 -28.14996 -26.99623 -26.55514 -24.36306 -23.37355 -22.17954 -21.82013 -20.72985 -20.03862 -17.89419 -16.98764 -16.52627 -15.85478 -15.71992 -15.44203 -14.96671 -14.76853 -14.54682 -14.02881 -13.96434 -13.84970 -13.32573 -13.24765 -13.15052 -12.71419 -12.65244 -12.54143 -12.45648 -12.28977 -12.02037 -11.77481 -11.71452 -11.45985 -11.38205 -11.20914 -11.18495 -10.99633 -10.92346 -10.61831 -10.57930 -10.44895 -10.27148 -10.14246 -9.93875 -9.47086 -9.02564 -8.79986 -8.57368 -8.55777 -7.61594 -6.07035 -4.04227 1.29534 1.33829 3.29508 3.35528 3.38162 3.41502 3.65165 3.88614 4.41064 4.68240 4.72687 4.81234 4.93908 5.05046 5.12764 5.19192 5.23068 5.26055 5.30815 5.35041 5.37107 5.44954 5.51195 5.53654 5.60931 5.67867 5.74863 5.77681 5.86509 5.95382 5.99362 6.04123 6.07028 6.10464 6.15466 6.25516 6.29656 6.32263 6.37970 6.41411 6.47007 6.51806 6.60167 6.67850 6.84079 6.96607 6.97852 7.03210 7.45347 7.65243 8.36190 8.50878 8.95790 9.06671 9.54433 11.06272 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.003502 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.161634 B = 7993.087556 C = 8535.129966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.169 3.831 4 C -0.151 4.151 5 C -0.175 4.175 6 N -0.582 5.582 7 C 0.213 3.787 8 C -0.521 4.521 9 H 0.074 0.926 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.872 3.128 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.512 3.488 17 O -0.546 6.546 18 C -0.146 4.146 19 C -0.071 4.071 20 C -0.068 4.068 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.131 4.131 24 C -0.086 4.086 25 C -0.115 4.115 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.263 0.737 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.901 -18.961 2.948 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C 0.083 3.917 4 C -0.208 4.208 5 C -0.233 4.233 6 N -0.314 5.314 7 C 0.093 3.907 8 C -0.560 4.560 9 H 0.092 0.908 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.699 3.301 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.300 3.700 17 O -0.424 6.424 18 C -0.185 4.185 19 C -0.109 4.109 20 C -0.068 4.068 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.149 4.149 24 C -0.086 4.086 25 C -0.171 4.171 26 C -0.135 4.135 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.533 -18.472 3.384 21.060 hybrid contribution -0.949 0.090 -0.174 0.969 sum 8.584 -18.382 3.210 20.540 Atomic orbital electron populations 1.21783 0.95577 1.00717 1.02808 1.22092 0.96854 0.96450 1.01756 1.20313 0.92473 0.90730 0.88186 1.22140 1.02267 1.02562 0.93808 1.22846 0.95045 1.02985 1.02409 1.48012 1.39524 1.39258 1.04593 1.19686 0.87112 0.87288 0.96638 1.21320 0.95611 0.90514 1.48505 0.90805 1.24835 0.98305 0.95074 0.94757 1.69892 1.35546 0.99259 1.49022 0.86912 0.86478 0.78202 0.78493 1.20004 1.21184 1.19067 1.20262 0.84834 0.81916 0.83015 1.90649 1.57458 1.52533 1.41802 1.22414 0.98996 1.00363 0.96733 1.20440 0.95447 0.99092 0.95896 1.20002 0.94915 0.94103 0.97805 1.21063 0.98995 0.92995 1.01170 1.21089 0.92876 0.99494 0.99954 1.20966 0.97165 0.94493 1.02263 1.19911 0.95657 0.93624 0.99395 1.20795 0.93237 1.01099 1.02004 1.21017 0.91874 0.99795 1.00824 0.92172 0.92410 0.93452 0.91323 0.91955 0.89659 0.92886 0.91800 0.91178 0.92097 0.91305 0.94872 0.94894 0.92662 0.88058 0.89132 0.90627 0.90010 0.86193 0.86327 0.86498 0.91182 0.91476 0.91764 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.27 37.15 0.34 -1.76 16 2 C -0.13 -1.73 4.81 -26.74 -0.13 -1.86 16 3 C 0.17 2.66 0.69 -131.82 -0.09 2.57 16 4 C -0.15 -2.47 7.10 37.16 0.26 -2.21 16 5 C -0.18 -2.43 7.00 37.16 0.26 -2.17 16 6 N -0.58 -11.62 1.51 -160.18 -0.24 -11.86 16 7 C 0.21 5.10 3.05 -5.19 -0.02 5.08 16 8 C -0.52 -14.53 8.75 -34.44 -0.30 -14.83 16 9 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 12 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 13 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 16 C 0.51 10.27 7.22 -10.99 -0.08 10.19 16 17 O -0.55 -13.25 15.53 5.56 0.09 -13.16 16 18 C -0.15 -2.15 3.29 -27.88 -0.09 -2.25 16 19 C -0.07 -1.00 4.67 -27.88 -0.13 -1.13 16 20 C -0.07 -0.84 5.13 -104.63 -0.54 -1.38 16 21 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.13 -1.28 9.70 -39.59 -0.38 -1.67 16 24 C -0.09 -0.90 5.88 -104.63 -0.62 -1.51 16 25 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 26 C -0.12 -1.38 9.36 -39.58 -0.37 -1.75 16 27 H 0.06 0.98 7.11 -51.93 -0.37 0.61 16 28 H 0.06 0.81 6.58 -51.93 -0.34 0.47 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.76 5.59 -51.92 -0.29 0.47 16 32 H 0.08 1.67 7.06 -51.93 -0.37 1.30 16 33 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.06 1.09 4.92 -51.93 -0.26 0.83 16 35 H 0.07 0.84 4.70 -51.93 -0.24 0.59 16 36 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 37 H 0.07 1.10 7.46 -51.93 -0.39 0.72 16 38 H 0.03 0.76 5.05 -51.93 -0.26 0.50 16 39 H 0.03 0.86 6.77 -51.93 -0.35 0.51 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.10 1.44 5.61 -51.93 -0.29 1.15 16 42 H 0.09 1.16 4.47 -51.93 -0.23 0.93 16 43 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 44 H 0.08 1.27 7.96 -51.93 -0.41 0.86 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 50 H 0.06 0.44 8.09 -51.92 -0.42 0.02 16 51 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -32.63 386.98 -9.06 -41.70 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.45 Total: 3.82 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.40 Total: -16.57 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.53 Total: -38.48 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.63 -9.06 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189946500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.471 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds