Wall clock time and date at job start Tue Mar 31 2020 11:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47402 * 2 1 4 4 C 1.53003 * 109.47031 * 294.50962 * 3 2 1 5 5 C 1.53006 * 109.46966 * 174.51482 * 3 2 1 6 6 N 1.46495 * 109.47632 * 54.51382 * 3 2 1 7 7 C 1.46503 * 120.00250 * 253.07235 * 6 3 2 8 8 C 1.50697 * 109.46840 * 269.99738 * 7 6 3 9 9 H 1.08004 * 120.00236 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99923 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00228 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99951 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47462 * 89.99762 * 12 10 8 14 14 H 1.48503 * 109.46919 * 210.00187 * 12 10 8 15 15 H 1.48509 * 109.47159 * 329.99754 * 12 10 8 16 16 C 1.34777 * 119.99920 * 73.06222 * 6 3 2 17 17 O 1.21280 * 120.00212 * 186.59484 * 16 6 3 18 18 C 1.50696 * 120.00069 * 6.59798 * 16 6 3 19 19 C 1.53005 * 109.47450 * 187.26004 * 18 16 6 20 20 C 1.50698 * 109.47335 * 179.97438 * 19 18 16 21 21 C 1.38258 * 120.00211 * 270.21492 * 20 19 18 22 22 C 1.38220 * 119.99682 * 180.25400 * 21 20 19 23 23 C 1.38252 * 119.99806 * 359.51477 * 22 21 20 24 24 C 1.38211 * 120.00362 * 0.26937 * 23 22 21 25 25 C 1.50697 * 120.00213 * 179.97438 * 24 23 22 26 26 C 1.38211 * 119.99568 * 90.00033 * 20 19 18 27 27 H 1.09004 * 109.47427 * 300.00648 * 1 2 3 28 28 H 1.09007 * 109.47109 * 60.00360 * 1 2 3 29 29 H 1.08999 * 109.47739 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47014 * 239.99432 * 2 1 3 31 31 H 1.09007 * 109.46919 * 120.00159 * 2 1 3 32 32 H 1.08999 * 109.46923 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47401 * 300.00232 * 4 3 2 34 34 H 1.09000 * 109.46555 * 60.00484 * 4 3 2 35 35 H 1.08995 * 109.47435 * 323.47579 * 5 3 2 36 36 H 1.08999 * 109.47207 * 83.48407 * 5 3 2 37 37 H 1.09002 * 109.46674 * 203.48002 * 5 3 2 38 38 H 1.08999 * 109.46610 * 29.99385 * 7 6 3 39 39 H 1.09000 * 109.47352 * 149.98920 * 7 6 3 40 40 H 0.96991 * 120.00062 * 179.97438 * 11 10 8 41 41 H 1.08998 * 109.47684 * 67.26116 * 18 16 6 42 42 H 1.08999 * 109.47339 * 307.26056 * 18 16 6 43 43 H 1.09004 * 109.46368 * 59.99849 * 19 18 16 44 44 H 1.08999 * 109.46892 * 300.00326 * 19 18 16 45 45 H 1.07995 * 119.99883 * 0.04558 * 21 20 19 46 46 H 1.07994 * 119.99758 * 179.78832 * 22 21 20 47 47 H 1.08004 * 119.99605 * 180.25618 * 23 22 21 48 48 H 1.09001 * 109.47636 * 90.00112 * 25 24 23 49 49 H 1.08999 * 109.47503 * 210.00731 * 25 24 23 50 50 H 1.09008 * 109.47203 * 330.00710 * 25 24 23 51 51 H 1.08004 * 120.00367 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6458 2.1227 -1.3126 5 6 3.5638 1.4445 0.1379 6 7 1.4469 2.1702 1.1246 7 6 0.4021 3.1681 0.8821 8 6 1.0367 4.5184 0.6701 9 1 2.1109 4.6229 0.7123 10 6 0.2461 5.6205 0.4224 11 7 0.7999 6.7990 0.2379 12 14 -1.6117 5.4399 0.3501 13 1 -2.1821 5.6451 1.7058 14 1 -2.1716 6.4523 -0.5810 15 1 -1.9584 4.0787 -0.1320 16 6 1.8624 1.9216 2.3824 17 8 1.2916 2.4337 3.3220 18 6 3.0361 1.0072 2.6214 19 6 3.1862 0.7514 4.1224 20 6 4.3596 -0.1635 4.3613 21 6 4.1760 -1.5337 4.3768 22 6 5.2514 -2.3726 4.6011 23 6 6.5124 -1.8418 4.8000 24 6 6.6967 -0.4721 4.7801 25 6 8.0711 0.1064 4.9974 26 6 5.6202 0.3672 4.5605 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.0088 3.1505 -1.3123 33 1 2.0871 1.5813 -2.1493 34 1 0.5602 2.1212 -1.4107 35 1 3.8693 0.6391 0.8057 36 1 4.0175 1.2959 -0.8420 37 1 3.8901 2.4002 0.5482 38 1 -0.1664 2.8905 -0.0055 39 1 -0.2657 3.2114 1.7424 40 1 0.2437 7.5742 0.0632 41 1 3.9442 1.4741 2.2399 42 1 2.8704 0.0609 2.1064 43 1 2.2782 0.2844 4.5038 44 1 3.3520 1.6977 4.6374 45 1 3.1917 -1.9484 4.2170 46 1 5.1073 -3.4427 4.6166 47 1 7.3534 -2.4974 4.9712 48 1 8.5788 0.2075 4.0382 49 1 7.9829 1.0862 5.4669 50 1 8.6461 -0.5561 5.6446 51 1 5.7642 1.4374 4.5453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189946500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:19 Heat of formation + Delta-G solvation = -32.240926 kcal Electronic energy + Delta-G solvation = -27813.444931 eV Core-core repulsion = 24290.960234 eV Total energy + Delta-G solvation = -3522.484697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55641 -40.24754 -38.38160 -35.70853 -34.95193 -33.49910 -33.20089 -31.85188 -30.99315 -29.70010 -28.09065 -27.67114 -25.59764 -24.66138 -23.70454 -22.85852 -21.98556 -21.07944 -19.38366 -19.14637 -17.49272 -17.14324 -17.05347 -16.87587 -16.33375 -15.85506 -15.73424 -15.61679 -15.18353 -14.85590 -14.58940 -14.47871 -14.36964 -14.02018 -13.82918 -13.81774 -13.63259 -13.47520 -13.27676 -13.03939 -12.88757 -12.82206 -12.73001 -12.62232 -12.39480 -12.30532 -12.09516 -11.95893 -11.84442 -11.80958 -11.77669 -11.57256 -11.50956 -11.13939 -10.80311 -10.65027 -9.64634 -9.42723 -9.30165 -8.32622 -6.34698 0.47531 0.53007 1.29052 1.33211 1.40836 1.82244 2.29511 2.32152 2.88885 3.01555 3.54799 3.77290 3.89847 3.99210 4.03360 4.09656 4.15258 4.20004 4.25374 4.33960 4.40726 4.53187 4.60484 4.60656 4.63587 4.72388 4.77207 4.79237 4.85357 4.88292 4.90594 4.93800 4.98017 5.00423 5.05348 5.09717 5.14197 5.16342 5.23459 5.26427 5.36011 5.37321 5.43955 5.50898 5.59533 5.62831 5.73891 5.76901 5.79525 6.18838 6.28312 6.65370 6.80192 7.24361 7.47737 8.84187 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.003502 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.161634 B = 7993.087556 C = 8535.129966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.157 3.843 4 C -0.147 4.147 5 C -0.171 4.171 6 N -0.585 5.585 7 C 0.227 3.773 8 C -0.519 4.519 9 H 0.030 0.970 10 C 0.013 3.987 11 N -0.945 5.945 12 Si 0.937 3.063 13 H -0.279 1.279 14 H -0.275 1.275 15 H -0.240 1.240 16 C 0.501 3.499 17 O -0.600 6.600 18 C -0.129 4.129 19 C -0.063 4.063 20 C -0.081 4.081 21 C -0.131 4.131 22 C -0.115 4.115 23 C -0.131 4.131 24 C -0.093 4.093 25 C -0.114 4.114 26 C -0.136 4.136 27 H 0.027 0.973 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.132 0.868 46 H 0.146 0.854 47 H 0.142 0.858 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 -23.102 1.936 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.073 3.927 4 C -0.205 4.205 5 C -0.228 4.228 6 N -0.316 5.316 7 C 0.105 3.895 8 C -0.558 4.558 9 H 0.048 0.952 10 C -0.184 4.184 11 N -0.585 5.585 12 Si 0.760 3.240 13 H -0.205 1.205 14 H -0.200 1.200 15 H -0.164 1.164 16 C 0.291 3.709 17 O -0.482 6.482 18 C -0.167 4.167 19 C -0.101 4.101 20 C -0.081 4.081 21 C -0.149 4.149 22 C -0.133 4.133 23 C -0.149 4.149 24 C -0.093 4.093 25 C -0.171 4.171 26 C -0.154 4.154 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.139 0.861 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.149 0.851 46 H 0.163 0.837 47 H 0.160 0.840 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.099 0.901 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.198 -22.652 2.339 24.952 hybrid contribution -1.028 1.382 0.154 1.730 sum 9.170 -21.270 2.494 23.296 Atomic orbital electron populations 1.21785 0.96280 1.01875 1.01035 1.22068 0.96162 0.94058 1.04040 1.20753 0.93666 0.92124 0.86157 1.22105 1.01797 1.00784 0.95777 1.22807 0.93548 1.02140 1.04322 1.48117 1.38757 1.38551 1.06158 1.19271 0.87799 0.86504 0.95918 1.21486 0.93685 0.92854 1.47728 0.95192 1.25732 1.03647 0.94603 0.94458 1.70037 1.37604 1.00262 1.50635 0.85873 0.79983 0.79725 0.78390 1.20537 1.19988 1.16358 1.21227 0.85489 0.81947 0.82282 1.90612 1.59344 1.54794 1.43420 1.22372 0.96421 1.00187 0.97766 1.20288 0.96371 0.98423 0.95031 1.19812 0.94065 0.94479 0.99729 1.21233 1.00143 0.92354 1.01139 1.21422 0.92393 1.00757 0.98689 1.21329 0.98109 0.94416 1.01030 1.20192 0.96140 0.94117 0.98834 1.20837 0.92254 1.01258 1.02748 1.21096 0.92490 0.99852 1.01945 0.95401 0.92727 0.90850 0.87771 0.90744 0.93841 0.88935 0.92668 0.88802 0.89530 0.94510 0.93266 0.97397 0.92451 0.87336 0.86143 0.91216 0.92646 0.85056 0.83660 0.83989 0.90442 0.91771 0.90114 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.27 71.98 0.67 -3.16 16 2 C -0.13 -2.80 4.81 30.59 0.15 -2.66 16 3 C 0.16 4.73 0.69 3.61 0.00 4.73 16 4 C -0.15 -4.67 7.10 71.98 0.51 -4.16 16 5 C -0.17 -4.43 7.00 71.98 0.50 -3.92 16 6 N -0.59 -23.84 1.51 -779.09 -1.18 -25.01 16 7 C 0.23 11.22 3.05 85.63 0.26 11.48 16 8 C -0.52 -30.49 8.75 25.60 0.22 -30.27 16 9 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 10 C 0.01 0.79 5.47 84.65 0.46 1.26 16 11 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16 12 Si 0.94 45.34 27.47 68.60 1.88 47.23 16 13 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 14 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 16 C 0.50 20.76 7.22 87.66 0.63 21.39 16 17 O -0.60 -30.79 15.53 -3.03 -0.05 -30.84 16 18 C -0.13 -3.77 3.29 29.85 0.10 -3.67 16 19 C -0.06 -1.83 4.67 29.85 0.14 -1.69 16 20 C -0.08 -1.93 5.13 -19.87 -0.10 -2.03 16 21 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 22 C -0.11 -1.88 10.05 22.27 0.22 -1.66 16 23 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 24 C -0.09 -1.77 5.88 -19.87 -0.12 -1.89 16 25 C -0.11 -1.64 10.01 71.23 0.71 -0.92 16 26 C -0.14 -3.15 9.36 22.27 0.21 -2.95 16 27 H 0.03 0.86 7.11 -2.39 -0.02 0.85 16 28 H 0.05 1.39 6.58 -2.38 -0.02 1.37 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.50 5.59 -2.38 -0.01 1.49 16 32 H 0.04 1.73 7.06 -2.39 -0.02 1.72 16 33 H 0.09 2.16 8.12 -2.39 -0.02 2.14 16 34 H 0.05 1.82 4.92 -2.39 -0.01 1.81 16 35 H 0.09 1.95 4.70 -2.39 -0.01 1.94 16 36 H 0.09 1.81 7.92 -2.39 -0.02 1.79 16 37 H 0.04 1.19 7.46 -2.39 -0.02 1.17 16 38 H 0.05 2.27 5.05 -2.39 -0.01 2.26 16 39 H 0.01 0.43 6.77 -2.39 -0.02 0.42 16 40 H 0.27 15.84 8.31 -92.72 -0.77 15.06 16 41 H 0.11 3.07 5.61 -2.39 -0.01 3.06 16 42 H 0.12 2.79 4.47 -2.39 -0.01 2.78 16 43 H 0.07 2.06 8.09 -2.38 -0.02 2.04 16 44 H 0.05 1.86 7.96 -2.39 -0.02 1.84 16 45 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 46 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 47 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.06 0.94 8.09 -2.39 -0.02 0.92 16 50 H 0.08 0.88 8.09 -2.38 -0.02 0.86 16 51 H 0.11 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -77.01 386.98 6.82 -70.19 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.85 Total: 22.67 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 5.01 Total: -24.43 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -0.88 Total: -84.82 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -77.01 6.82 -70.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189946500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.948 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds