Wall clock time and date at job start Tue Mar 31 2020 11:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46836 * 2 1 4 4 C 1.53006 * 109.46675 * 240.00916 * 2 1 3 5 5 C 1.50693 * 109.47683 * 59.99718 * 4 2 1 6 6 H 1.08007 * 119.99692 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00372 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99850 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00421 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47042 * 59.99815 * 9 7 5 11 11 H 1.48497 * 109.47148 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47015 * 300.00352 * 9 7 5 13 13 C 1.52991 * 109.47522 * 120.00785 * 2 1 3 14 14 N 1.46903 * 109.46972 * 299.99989 * 13 2 1 15 15 C 1.46894 * 111.00296 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47457 * 179.97438 * 15 14 13 17 17 H 1.09006 * 110.56139 * 52.32479 * 16 15 14 18 18 C 1.54506 * 110.51396 * 289.64411 * 16 15 14 19 19 C 1.54477 * 104.06393 * 241.35276 * 18 16 15 20 20 O 1.44423 * 104.80156 * 336.01945 * 19 18 16 21 21 C 1.44426 * 105.27589 * 40.51571 * 20 19 18 22 22 H 1.09002 * 110.37340 * 78.31497 * 21 20 19 23 23 C 1.50707 * 110.37311 * 200.54365 * 21 20 19 24 24 C 1.38230 * 119.99830 * 36.77296 * 23 21 20 25 25 C 1.38238 * 120.00030 * 179.76797 * 24 23 21 26 26 C 1.38234 * 119.99599 * 0.48124 * 25 24 23 27 27 C 1.38231 * 119.99992 * 359.79643 * 26 25 24 28 28 C 1.38234 * 119.99793 * 217.04792 * 23 21 20 29 29 H 1.08998 * 109.46665 * 299.99079 * 1 2 3 30 30 H 1.09001 * 109.47169 * 59.99541 * 1 2 3 31 31 H 1.09003 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46711 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47391 * 300.00431 * 3 2 1 34 34 H 1.09004 * 109.46779 * 60.00556 * 3 2 1 35 35 H 1.08998 * 109.46739 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.46675 * 299.99224 * 4 2 1 37 37 H 0.96994 * 119.99807 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47583 * 179.97438 * 13 2 1 39 39 H 1.08996 * 109.47672 * 59.99647 * 13 2 1 40 40 H 1.00904 * 110.99992 * 303.95236 * 14 13 2 41 41 H 1.09009 * 109.47170 * 60.00148 * 15 14 13 42 42 H 1.08993 * 109.47395 * 300.00217 * 15 14 13 43 43 H 1.09006 * 110.50783 * 122.70511 * 18 16 15 44 44 H 1.08992 * 110.51043 * 0.02562 * 18 16 15 45 45 H 1.09001 * 110.36964 * 217.19226 * 19 18 16 46 46 H 1.08998 * 110.46437 * 94.90072 * 19 18 16 47 47 H 1.08003 * 120.00146 * 359.97438 * 24 23 21 48 48 H 1.07999 * 120.00023 * 180.25465 * 25 24 23 49 49 H 1.07995 * 120.00061 * 179.76461 * 26 25 24 50 50 H 1.08001 * 120.00262 * 179.97438 * 27 26 25 51 51 H 1.08000 * 119.99891 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5376 -0.0106 -2.4798 6 1 0.9163 0.8673 -2.3805 7 6 1.8710 -0.4812 -3.7321 8 7 2.6272 -1.5505 -3.8529 9 14 1.2477 0.3990 -5.2572 10 1 1.7416 1.7995 -5.2571 11 1 1.7428 -0.3008 -6.4698 12 1 -0.2373 0.3980 -5.2572 13 6 2.0401 -0.7214 1.2490 14 7 1.5505 -0.0290 2.4486 15 6 2.0210 -0.6955 3.6701 16 6 1.4925 0.0529 4.8955 17 1 0.4123 0.1824 4.8285 18 6 2.1941 1.4221 5.0378 19 6 2.9108 1.3365 6.4036 20 8 2.1717 0.3426 7.1465 21 6 1.8683 -0.6981 6.1921 22 1 2.7427 -1.3275 6.0263 23 6 0.7080 -1.5301 6.6743 24 6 -0.3386 -0.9309 7.3498 25 6 -1.4053 -1.6934 7.7879 26 6 -1.4205 -3.0565 7.5592 27 6 -0.3711 -3.6566 6.8887 28 6 0.6931 -2.8934 6.4460 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1299 -0.7215 -1.2492 36 1 1.6767 -1.7487 -1.2494 37 1 2.8614 -1.8818 -4.7339 38 1 3.1301 -0.7218 1.2488 39 1 1.6768 -1.7490 1.2490 40 1 1.8199 0.9434 2.4402 41 1 3.1110 -0.6957 3.6871 42 1 1.6573 -1.7228 3.6866 43 1 1.4607 2.2285 5.0412 44 1 2.9171 1.5660 4.2351 45 1 2.8711 2.2988 6.9139 46 1 3.9455 1.0200 6.2719 47 1 -0.3246 0.1335 7.5324 48 1 -2.2249 -1.2245 8.3121 49 1 -2.2519 -3.6528 7.9048 50 1 -0.3827 -4.7217 6.7104 51 1 1.5127 -3.3621 5.9218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192376176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:30 Heat of formation + Delta-G solvation = -42.372361 kcal Electronic energy + Delta-G solvation = -26695.345681 eV Core-core repulsion = 23172.421652 eV Total energy + Delta-G solvation = -3522.924029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43332 -38.68611 -37.61533 -34.94752 -32.65453 -32.22341 -31.36658 -31.04979 -28.59237 -26.98949 -26.34066 -25.84544 -24.11661 -23.51523 -22.54167 -22.22793 -21.24211 -20.33306 -17.93369 -17.49265 -16.46914 -16.19252 -16.00755 -15.75348 -15.36938 -14.93236 -14.67541 -14.33058 -14.13468 -13.77141 -13.64484 -13.51158 -13.32068 -12.98439 -12.96955 -12.58524 -12.55274 -12.01259 -11.91032 -11.77012 -11.51479 -11.24396 -11.10388 -11.03863 -10.94561 -10.81401 -10.78627 -10.75563 -10.48668 -10.25335 -10.13243 -10.07704 -9.68427 -9.07744 -9.02949 -8.89705 -8.82164 -8.31432 -8.11611 -5.96152 -3.96366 1.13158 1.24877 3.34533 3.39231 3.41419 3.46750 3.76932 4.20878 4.31459 4.48934 4.65686 4.69820 4.76686 4.80012 4.86625 4.96689 5.01105 5.12182 5.23126 5.34305 5.36947 5.39560 5.49670 5.51729 5.60393 5.63043 5.73651 5.74987 5.77620 5.88205 5.90436 5.98229 6.07775 6.24213 6.27225 6.33015 6.34490 6.35394 6.49975 6.64554 6.66171 6.78366 6.81708 6.82806 7.20486 7.21360 7.26323 7.38641 7.65155 7.70686 7.85482 8.04074 8.48420 9.08802 9.66398 11.15529 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.002511 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.974215 B =11149.844858 C =11950.370662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.070 3.930 14 N -0.685 5.685 15 C 0.067 3.933 16 C -0.108 4.108 17 H 0.095 0.905 18 C -0.152 4.152 19 C 0.044 3.956 20 O -0.367 6.367 21 C 0.121 3.879 22 H 0.077 0.923 23 C -0.079 4.079 24 C -0.094 4.094 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.108 4.108 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.012 0.988 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.022 0.978 39 H 0.066 0.934 40 H 0.337 0.663 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.125 0.875 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 1.441 24.442 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.058 4.058 14 N -0.317 5.317 15 C -0.062 4.062 16 C -0.127 4.127 17 H 0.114 0.886 18 C -0.190 4.190 19 C -0.032 4.032 20 O -0.286 6.286 21 C 0.063 3.937 22 H 0.095 0.905 23 C -0.079 4.079 24 C -0.112 4.112 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.126 4.126 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.157 0.843 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.143 0.857 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.286 1.005 24.529 24.769 hybrid contribution 0.786 0.599 -1.229 1.577 sum -2.499 1.604 23.301 23.489 Atomic orbital electron populations 1.21596 0.94981 1.00585 1.00136 1.20625 0.95875 0.94954 0.94395 1.21769 0.99642 0.96804 1.00395 1.19115 0.95847 0.95201 0.90171 1.21198 1.30774 1.11964 0.90626 0.92354 1.25015 0.95400 0.95122 0.99043 1.69957 1.37262 1.23180 1.23393 0.86726 0.79224 0.79758 0.82694 1.20364 1.21439 1.20299 1.22109 0.96258 0.98170 0.89309 1.60551 1.63720 1.06342 1.01059 1.21915 0.96522 0.98515 0.89269 1.22599 1.02398 0.94082 0.93614 0.88635 1.23036 1.00250 0.97967 0.97774 1.23412 0.95238 0.92759 0.91822 1.89148 1.74621 1.31927 1.32876 1.21809 0.94968 0.89309 0.87658 0.90539 1.19579 0.95457 0.93506 0.99391 1.20978 0.92961 1.00297 0.96959 1.21163 0.98402 0.94149 1.00452 1.21174 0.98520 0.95037 0.99076 1.21102 0.94168 0.99903 0.98664 1.20965 0.98947 0.92899 0.99785 0.93907 0.92721 0.94192 0.94145 0.91690 0.94877 0.96965 0.96702 0.93108 0.95930 0.91571 0.84320 0.95503 0.90904 0.90269 0.90449 0.89017 0.92262 0.85713 0.86091 0.86173 0.85929 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.85 7.65 -34.45 -0.26 -14.12 16 6 H 0.06 1.55 5.68 -52.48 -0.30 1.25 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.07 1.19 4.65 -3.83 -0.02 1.18 16 14 N -0.68 -9.61 5.71 -113.79 -0.65 -10.26 16 15 C 0.07 0.80 4.85 -3.83 -0.02 0.78 16 16 C -0.11 -1.12 2.88 -89.05 -0.26 -1.38 16 17 H 0.10 1.12 7.83 -51.93 -0.41 0.72 16 18 C -0.15 -1.37 6.26 -25.17 -0.16 -1.53 16 19 C 0.04 0.38 7.63 37.93 0.29 0.67 16 20 O -0.37 -4.04 10.61 -35.23 -0.37 -4.41 16 21 C 0.12 1.25 3.04 -27.10 -0.08 1.16 16 22 H 0.08 0.75 7.78 -51.93 -0.40 0.35 16 23 C -0.08 -0.85 4.94 -104.62 -0.52 -1.37 16 24 C -0.09 -0.99 9.33 -39.58 -0.37 -1.35 16 25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 26 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 27 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 28 C -0.11 -1.08 9.68 -39.58 -0.38 -1.47 16 29 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 30 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 34 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.34 4.50 5.79 -39.29 -0.23 4.28 16 41 H 0.03 0.31 8.11 -51.92 -0.42 -0.11 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.69 7.22 -51.93 -0.38 0.31 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.12 1.26 7.72 -52.48 -0.41 0.85 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 49 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 50 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -30.13 397.06 -11.02 -41.14 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -9.01 Total: 2.13 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -2.68 Total: -25.02 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.09 Total: -36.38 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.37 Total: -4.41 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.13 -11.02 -41.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192376176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.229 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds