Wall clock time and date at job start Tue Mar 31 2020 11:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46836 * 2 1 4 4 C 1.53006 * 109.46675 * 240.00916 * 2 1 3 5 5 C 1.50693 * 109.47683 * 59.99718 * 4 2 1 6 6 H 1.08007 * 119.99692 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00372 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99850 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00421 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47042 * 59.99815 * 9 7 5 11 11 H 1.48497 * 109.47148 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47015 * 300.00352 * 9 7 5 13 13 C 1.52991 * 109.47522 * 120.00785 * 2 1 3 14 14 N 1.46903 * 109.46972 * 299.99989 * 13 2 1 15 15 C 1.46894 * 111.00296 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47457 * 179.97438 * 15 14 13 17 17 H 1.09006 * 110.56139 * 52.32479 * 16 15 14 18 18 C 1.54506 * 110.51396 * 289.64411 * 16 15 14 19 19 C 1.54477 * 104.06393 * 241.35276 * 18 16 15 20 20 O 1.44423 * 104.80156 * 336.01945 * 19 18 16 21 21 C 1.44426 * 105.27589 * 40.51571 * 20 19 18 22 22 H 1.09002 * 110.37340 * 78.31497 * 21 20 19 23 23 C 1.50707 * 110.37311 * 200.54365 * 21 20 19 24 24 C 1.38230 * 119.99830 * 36.77296 * 23 21 20 25 25 C 1.38238 * 120.00030 * 179.76797 * 24 23 21 26 26 C 1.38234 * 119.99599 * 0.48124 * 25 24 23 27 27 C 1.38231 * 119.99992 * 359.79643 * 26 25 24 28 28 C 1.38234 * 119.99793 * 217.04792 * 23 21 20 29 29 H 1.08998 * 109.46665 * 299.99079 * 1 2 3 30 30 H 1.09001 * 109.47169 * 59.99541 * 1 2 3 31 31 H 1.09003 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46711 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47391 * 300.00431 * 3 2 1 34 34 H 1.09004 * 109.46779 * 60.00556 * 3 2 1 35 35 H 1.08998 * 109.46739 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.46675 * 299.99224 * 4 2 1 37 37 H 0.96994 * 119.99807 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47583 * 179.97438 * 13 2 1 39 39 H 1.08996 * 109.47672 * 59.99647 * 13 2 1 40 40 H 1.00904 * 110.99992 * 303.95236 * 14 13 2 41 41 H 1.09009 * 109.47170 * 60.00148 * 15 14 13 42 42 H 1.08993 * 109.47395 * 300.00217 * 15 14 13 43 43 H 1.09006 * 110.50783 * 122.70511 * 18 16 15 44 44 H 1.08992 * 110.51043 * 0.02562 * 18 16 15 45 45 H 1.09001 * 110.36964 * 217.19226 * 19 18 16 46 46 H 1.08998 * 110.46437 * 94.90072 * 19 18 16 47 47 H 1.08003 * 120.00146 * 359.97438 * 24 23 21 48 48 H 1.07999 * 120.00023 * 180.25465 * 25 24 23 49 49 H 1.07995 * 120.00061 * 179.76461 * 26 25 24 50 50 H 1.08001 * 120.00262 * 179.97438 * 27 26 25 51 51 H 1.08000 * 119.99891 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5376 -0.0106 -2.4798 6 1 0.9163 0.8673 -2.3805 7 6 1.8710 -0.4812 -3.7321 8 7 2.6272 -1.5505 -3.8529 9 14 1.2477 0.3990 -5.2572 10 1 1.7416 1.7995 -5.2571 11 1 1.7428 -0.3008 -6.4698 12 1 -0.2373 0.3980 -5.2572 13 6 2.0401 -0.7214 1.2490 14 7 1.5505 -0.0290 2.4486 15 6 2.0210 -0.6955 3.6701 16 6 1.4925 0.0529 4.8955 17 1 0.4123 0.1824 4.8285 18 6 2.1941 1.4221 5.0378 19 6 2.9108 1.3365 6.4036 20 8 2.1717 0.3426 7.1465 21 6 1.8683 -0.6981 6.1921 22 1 2.7427 -1.3275 6.0263 23 6 0.7080 -1.5301 6.6743 24 6 -0.3386 -0.9309 7.3498 25 6 -1.4053 -1.6934 7.7879 26 6 -1.4205 -3.0565 7.5592 27 6 -0.3711 -3.6566 6.8887 28 6 0.6931 -2.8934 6.4460 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1299 -0.7215 -1.2492 36 1 1.6767 -1.7487 -1.2494 37 1 2.8614 -1.8818 -4.7339 38 1 3.1301 -0.7218 1.2488 39 1 1.6768 -1.7490 1.2490 40 1 1.8199 0.9434 2.4402 41 1 3.1110 -0.6957 3.6871 42 1 1.6573 -1.7228 3.6866 43 1 1.4607 2.2285 5.0412 44 1 2.9171 1.5660 4.2351 45 1 2.8711 2.2988 6.9139 46 1 3.9455 1.0200 6.2719 47 1 -0.3246 0.1335 7.5324 48 1 -2.2249 -1.2245 8.3121 49 1 -2.2519 -3.6528 7.9048 50 1 -0.3827 -4.7217 6.7104 51 1 1.5127 -3.3621 5.9218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192376176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:29 Heat of formation + Delta-G solvation = -57.957537 kcal Electronic energy + Delta-G solvation = -26696.021505 eV Core-core repulsion = 23172.421652 eV Total energy + Delta-G solvation = -3523.599853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20706 -39.48311 -39.02757 -36.22459 -34.45252 -33.12112 -32.45286 -31.75747 -29.52680 -28.83106 -27.89302 -27.11040 -25.54119 -24.25721 -23.87105 -23.23745 -22.04945 -21.16702 -19.53025 -18.32959 -18.23111 -17.36642 -16.75499 -16.63832 -16.51367 -16.32887 -15.74116 -15.49866 -15.20422 -15.05259 -14.85279 -14.39408 -14.22013 -14.09816 -14.02422 -13.96151 -13.81740 -13.53008 -13.31662 -12.80327 -12.73335 -12.63506 -12.45663 -12.37242 -12.24173 -12.14363 -11.97695 -11.92972 -11.81210 -11.69376 -11.56243 -11.36567 -10.86417 -10.82854 -10.71938 -10.49729 -9.80099 -9.61921 -9.30249 -8.13776 -6.20818 0.40660 0.52298 1.40989 1.43163 1.50437 2.43845 2.74647 2.98978 3.20096 3.22857 3.54887 3.85129 3.90011 4.01822 4.08752 4.14110 4.19782 4.21223 4.28324 4.31936 4.33813 4.37556 4.42376 4.56100 4.66158 4.72617 4.76047 4.78186 4.83839 4.87168 4.93965 4.95766 5.06165 5.08088 5.13977 5.18302 5.20650 5.21914 5.25340 5.51963 5.54194 5.56255 5.58822 5.62201 5.64058 5.65458 5.87447 5.90604 5.93063 6.07698 6.12326 6.37148 6.53902 6.94242 7.46524 8.98430 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.002511 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.974215 B =11149.844858 C =11950.370662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.515 4.515 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.083 3.917 14 N -0.681 5.681 15 C 0.071 3.929 16 C -0.099 4.099 17 H 0.082 0.918 18 C -0.149 4.149 19 C 0.042 3.958 20 O -0.383 6.383 21 C 0.124 3.876 22 H 0.079 0.921 23 C -0.095 4.095 24 C -0.109 4.109 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.028 0.972 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.068 0.932 35 H -0.016 1.016 36 H -0.017 1.017 37 H 0.260 0.740 38 H 0.019 0.981 39 H 0.054 0.946 40 H 0.345 0.655 41 H 0.034 0.966 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.123 0.877 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.140 0.860 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 2.769 25.543 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.055 4.055 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.046 4.046 14 N -0.314 5.314 15 C -0.058 4.058 16 C -0.118 4.118 17 H 0.101 0.899 18 C -0.187 4.187 19 C -0.034 4.034 20 O -0.303 6.303 21 C 0.066 3.934 22 H 0.097 0.903 23 C -0.096 4.096 24 C -0.127 4.127 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.147 4.147 28 C -0.140 4.140 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.003 0.997 36 H 0.001 0.999 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.165 0.835 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.125 0.875 46 H 0.085 0.915 47 H 0.141 0.859 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.158 0.842 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.090 2.353 25.649 26.079 hybrid contribution 1.033 0.143 -1.504 1.830 sum -3.057 2.496 24.145 24.465 Atomic orbital electron populations 1.21500 0.94425 0.99981 1.00475 1.20488 0.96190 0.95685 0.93151 1.21683 0.99502 0.95525 1.01221 1.19000 0.93969 0.94045 0.92720 1.21593 1.30228 1.11999 0.91462 0.91600 1.25918 0.95705 0.95903 1.02563 1.70103 1.38851 1.24922 1.24086 0.85644 0.78917 0.78839 0.78531 1.19196 1.21377 1.19394 1.21802 0.95862 0.97480 0.89505 1.60459 1.63684 1.06631 1.00622 1.21908 0.96960 0.98253 0.88716 1.22446 1.01606 0.94843 0.92903 0.89912 1.23028 1.00372 0.97108 0.98170 1.23564 0.95298 0.93024 0.91548 1.89137 1.75023 1.32507 1.33588 1.21767 0.95003 0.89238 0.87403 0.90288 1.19742 0.95840 0.93976 0.99994 1.21101 0.93538 1.00485 0.97588 1.21451 0.98600 0.94503 1.00257 1.21504 0.99061 0.95196 0.98600 1.21413 0.93996 1.00900 0.98343 1.21181 0.99690 0.92941 1.00224 0.91444 0.94290 0.95296 0.94349 0.93458 0.91370 0.99723 0.99895 0.93166 0.96277 0.92709 0.83504 0.94738 0.91512 0.89671 0.89994 0.87468 0.91509 0.85862 0.84239 0.83970 0.84190 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.05 8.06 71.98 0.58 -3.47 16 2 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 3 C -0.12 -4.29 7.89 71.98 0.57 -3.72 16 4 C 0.04 2.08 4.04 29.85 0.12 2.20 16 5 C -0.51 -28.45 7.65 25.60 0.20 -28.25 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 9 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.08 2.78 4.65 86.30 0.40 3.18 16 14 N -0.68 -17.95 5.71 -513.91 -2.94 -20.88 16 15 C 0.07 1.58 4.85 86.30 0.42 1.99 16 16 C -0.10 -1.92 2.88 -9.78 -0.03 -1.95 16 17 H 0.08 1.85 7.83 -2.38 -0.02 1.83 16 18 C -0.15 -2.36 6.26 31.61 0.20 -2.17 16 19 C 0.04 0.64 7.63 72.48 0.55 1.20 16 20 O -0.38 -7.98 10.61 -148.98 -1.58 -9.56 16 21 C 0.12 2.45 3.04 30.35 0.09 2.54 16 22 H 0.08 1.49 7.78 -2.39 -0.02 1.47 16 23 C -0.10 -2.00 4.94 -19.87 -0.10 -2.10 16 24 C -0.11 -2.22 9.33 22.27 0.21 -2.01 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 26 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 27 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 28 C -0.12 -2.39 9.68 22.27 0.22 -2.17 16 29 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 30 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 34 H 0.07 1.91 6.57 -2.38 -0.02 1.89 16 35 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 36 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.34 8.27 5.79 -89.69 -0.52 7.75 16 41 H 0.03 0.74 8.11 -2.38 -0.02 0.72 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.08 1.24 7.22 -2.39 -0.02 1.22 16 45 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.12 2.44 7.72 -2.91 -0.02 2.41 16 48 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 49 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 50 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 51 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -65.47 397.06 2.69 -62.79 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.36 Total: 21.01 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 4.53 Total: -42.60 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -2.65 Total: -78.05 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.58 Total: -9.56 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -65.47 2.69 -62.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192376176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.829 kcal (2) G-P(sol) polarization free energy of solvation -65.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds