Wall clock time and date at job start Tue Mar 31 2020 12:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 H 1.09003 * 109.47087 * 55.00920 * 3 2 1 5 5 C 1.52998 * 109.47724 * 295.00415 * 3 2 1 6 6 C 1.52992 * 109.47216 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47269 * 60.00045 * 6 5 3 8 8 C 1.52998 * 109.46965 * 300.00109 * 7 6 5 9 9 H 1.09004 * 109.46715 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.46944 * 299.99592 * 8 7 6 11 11 C 1.46902 * 110.99981 * 275.00049 * 10 8 7 12 12 H 1.09004 * 109.46880 * 35.00352 * 11 10 8 13 13 C 1.53001 * 109.47569 * 275.00263 * 11 10 8 14 14 C 1.50700 * 109.47083 * 154.99751 * 11 10 8 15 15 C 1.38300 * 119.92751 * 39.73520 * 14 11 10 16 16 C 1.38102 * 120.06766 * 179.72584 * 15 14 11 17 17 C 1.38874 * 119.93007 * 0.54033 * 16 15 14 18 18 O 1.35756 * 120.06821 * 179.75139 * 17 16 15 19 19 C 1.34834 * 116.99814 * 174.44171 * 18 17 16 20 20 H 1.08004 * 119.99898 * 5.05035 * 19 18 17 21 21 C 1.38646 * 119.99767 * 185.05810 * 19 18 17 22 22 N 1.31563 * 120.00225 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00032 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46980 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47309 * 119.99668 * 23 21 19 26 26 H 1.48503 * 109.46830 * 239.99898 * 23 21 19 27 27 C 1.38874 * 119.86214 * 359.72692 * 17 16 15 28 28 C 1.38100 * 119.93470 * 0.02562 * 27 17 16 29 29 C 1.52992 * 109.47216 * 59.99859 * 8 7 6 30 30 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46669 * 299.99120 * 1 2 3 32 32 H 1.09001 * 109.47411 * 59.99044 * 1 2 3 33 33 H 1.09000 * 109.46540 * 240.00734 * 2 1 3 34 34 H 1.08997 * 109.47653 * 120.00495 * 2 1 3 35 35 H 1.09003 * 109.46795 * 300.00126 * 5 3 2 36 36 H 1.09004 * 109.46715 * 60.00178 * 5 3 2 37 37 H 1.09003 * 109.47453 * 299.99860 * 6 5 3 38 38 H 1.08998 * 109.47124 * 179.97438 * 6 5 3 39 39 H 1.08996 * 109.47412 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47034 * 59.99558 * 7 6 5 41 41 H 1.00899 * 111.00041 * 38.95103 * 10 8 7 42 42 H 1.09001 * 109.46581 * 299.99968 * 13 11 10 43 43 H 1.08997 * 109.47163 * 59.99719 * 13 11 10 44 44 H 1.08996 * 109.47607 * 180.02562 * 13 11 10 45 45 H 1.08000 * 119.96834 * 359.97438 * 15 14 11 46 46 H 1.08002 * 120.03360 * 180.26632 * 16 15 14 47 47 H 0.97004 * 119.99656 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.03807 * 179.97438 * 27 17 16 49 49 H 1.07996 * 119.96857 * 179.97438 * 28 27 17 50 50 H 1.09003 * 109.47453 * 60.00140 * 29 8 7 51 51 H 1.09007 * 109.46973 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 2.1446 3.5693 -1.3068 7 6 3.6694 3.5718 -1.1809 8 6 4.0742 2.8876 0.1263 9 1 5.1606 2.8889 0.2158 10 7 3.4880 3.6136 1.2609 11 6 4.3400 4.7416 1.6609 12 1 4.8084 5.1744 0.7769 13 6 5.4232 4.2471 2.6216 14 6 3.4994 5.7874 2.3469 15 6 2.4962 5.4038 3.2183 16 6 1.7279 6.3600 3.8528 17 6 1.9560 7.7075 3.6066 18 8 1.1991 8.6496 4.2250 19 6 1.5467 9.9380 4.0315 20 1 2.3419 10.1853 3.3439 21 6 0.8834 10.9451 4.7156 22 7 -0.0856 10.6439 5.5530 23 14 1.3644 12.7301 4.4471 24 1 2.4740 12.8009 3.4626 25 1 0.1950 13.4857 3.9308 26 1 1.8072 13.3224 5.7349 27 6 2.9604 8.0893 2.7268 28 6 3.7287 7.1286 2.0992 29 6 3.5648 1.4450 0.1260 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8902 32 1 -0.3634 0.5140 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0698 1.5877 -2.1491 36 1 0.5488 2.1254 -1.3967 37 1 1.7096 4.1081 -0.4650 38 1 1.8566 4.0566 -2.2383 39 1 4.0324 4.5995 -1.1811 40 1 4.1044 3.0330 -2.0227 41 1 2.5527 3.9253 1.0464 42 1 4.9547 3.8143 3.5055 43 1 6.0312 3.4906 2.1254 44 1 6.0550 5.0840 2.9187 45 1 2.3162 4.3556 3.4058 46 1 0.9475 6.0599 4.5365 47 1 -0.5499 11.3486 6.0312 48 1 3.1400 9.1365 2.5329 49 1 4.5097 7.4249 1.4147 50 1 3.9998 0.9062 -0.7159 51 1 3.8536 0.9574 1.0571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246915112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:01 Heat of formation + Delta-G solvation = -35.307137 kcal Electronic energy + Delta-G solvation = -26960.342625 eV Core-core repulsion = 23437.724967 eV Total energy + Delta-G solvation = -3522.617658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.88253 -38.95291 -37.11926 -35.32670 -33.40946 -32.23531 -31.07505 -30.17989 -29.40232 -27.94330 -27.82782 -25.38735 -23.97503 -22.58228 -22.42187 -21.87228 -20.69691 -20.03878 -18.87376 -17.89517 -17.06368 -16.16332 -15.40850 -15.22108 -15.02369 -14.56238 -14.46411 -14.22796 -13.84869 -13.69067 -13.62471 -13.44131 -13.32275 -12.81867 -12.74462 -12.62785 -12.34391 -12.21432 -12.03017 -11.95077 -11.67971 -11.62910 -11.52282 -11.26706 -11.21512 -11.12112 -10.94995 -10.70197 -10.61201 -10.53475 -10.41935 -10.18473 -10.15466 -9.96265 -9.32620 -8.82810 -8.24730 -8.15490 -7.16315 -6.45036 -4.03858 2.23769 2.32180 3.11697 3.13328 3.18749 3.96477 4.27401 4.54360 4.57175 4.58679 4.70456 4.95983 4.97640 5.08437 5.12398 5.17363 5.24319 5.32751 5.35890 5.40155 5.45065 5.50595 5.54007 5.59855 5.62229 5.71273 5.74479 5.77982 5.82312 5.88178 5.90515 5.94115 5.99801 6.04962 6.06548 6.11291 6.12186 6.23989 6.25318 6.31567 6.40764 6.46168 6.51626 6.74805 6.89877 7.06223 7.13275 7.29455 7.44609 7.48012 7.63446 7.84818 8.00278 9.00867 9.71563 10.73129 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.002685 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.093133 B =10427.562340 C =10903.168430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.087 4.087 4 H 0.079 0.921 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.149 4.149 8 C 0.087 3.913 9 H 0.074 0.926 10 N -0.677 5.677 11 C 0.141 3.859 12 H 0.039 0.961 13 C -0.131 4.131 14 C -0.190 4.190 15 C -0.056 4.056 16 C -0.195 4.195 17 C 0.155 3.845 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.234 4.234 28 C -0.066 4.066 29 C -0.098 4.098 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.346 0.654 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.269 0.731 48 H 0.125 0.875 49 H 0.103 0.897 50 H 0.057 0.943 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 -17.348 -12.716 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.106 4.106 4 H 0.097 0.903 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.188 4.188 8 C -0.024 4.024 9 H 0.092 0.908 10 N -0.311 5.311 11 C 0.032 3.968 12 H 0.057 0.943 13 C -0.189 4.189 14 C -0.191 4.191 15 C -0.075 4.075 16 C -0.214 4.214 17 C 0.101 3.899 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.254 4.254 28 C -0.085 4.085 29 C -0.136 4.136 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.168 0.832 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.079 0.921 48 H 0.143 0.857 49 H 0.121 0.879 50 H 0.075 0.925 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.660 -17.653 -11.932 22.324 hybrid contribution 0.123 1.692 -0.921 1.931 sum 6.783 -15.960 -12.853 21.586 Atomic orbital electron populations 1.21828 0.96098 1.01208 1.02048 1.21550 0.95754 0.96688 1.01536 1.21157 0.95731 0.95542 0.98147 0.90259 1.21629 1.00499 0.95401 0.97576 1.21525 0.95571 0.97027 1.01859 1.22186 0.96512 1.00986 0.99126 1.21554 0.98592 0.93814 0.88405 0.90818 1.60797 1.06008 1.27112 1.37164 1.20142 0.92594 0.88423 0.95625 0.94256 1.21774 0.97404 1.00101 0.99641 1.19286 1.01712 0.93106 1.05033 1.20495 0.94067 0.98154 0.94758 1.20256 1.04724 0.90322 1.06117 1.19414 0.89606 0.89899 0.90947 1.83984 1.47398 1.15052 1.61794 1.21364 1.20130 0.78970 1.26277 0.89082 1.25283 0.95851 0.99915 0.95490 1.70053 1.21025 1.33632 1.25068 0.85659 0.78623 0.80699 0.78512 1.19139 1.20149 1.20131 1.21114 1.00865 0.99957 1.03437 1.20579 0.97707 0.92210 0.97979 1.21545 0.95189 0.95481 1.01415 0.93211 0.92567 0.92647 0.92534 0.92104 0.92437 0.91961 0.91672 0.92153 0.92181 0.91889 0.83206 0.92052 0.93618 0.92867 0.86340 0.86636 0.92089 0.85699 0.87900 0.92463 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.12 -0.95 5.40 -26.73 -0.14 -1.09 16 3 C -0.09 -0.78 1.95 -90.62 -0.18 -0.96 16 4 H 0.08 0.84 7.21 -51.93 -0.37 0.46 16 5 C -0.11 -0.99 4.96 -26.74 -0.13 -1.12 16 6 C -0.12 -1.19 5.67 -26.73 -0.15 -1.34 16 7 C -0.15 -1.44 5.50 -26.73 -0.15 -1.58 16 8 C 0.09 0.86 2.67 -67.72 -0.18 0.68 16 9 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16 10 N -0.68 -8.03 4.95 -100.95 -0.50 -8.53 16 11 C 0.14 1.88 2.63 -68.86 -0.18 1.70 16 12 H 0.04 0.52 6.97 -51.93 -0.36 0.16 16 13 C -0.13 -1.66 9.38 37.16 0.35 -1.31 16 14 C -0.19 -3.16 4.72 -104.57 -0.49 -3.66 16 15 C -0.06 -1.00 8.99 -39.61 -0.36 -1.35 16 16 C -0.19 -4.12 9.99 -39.40 -0.39 -4.51 16 17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.18 -5.12 9.76 0.02 0.00 -5.12 16 19 C -0.39 -10.97 9.49 30.88 0.29 -10.67 16 20 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 23 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 28 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 29 C -0.10 -0.88 4.92 -26.73 -0.13 -1.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 37 H 0.06 0.73 6.26 -51.93 -0.32 0.40 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.64 7.43 -51.93 -0.39 0.25 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.35 4.39 4.81 -39.29 -0.19 4.20 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.51 7.43 -51.93 -0.39 0.12 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.12 1.87 7.70 -52.49 -0.40 1.47 16 46 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 47 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 49 H 0.10 1.62 8.03 -52.49 -0.42 1.20 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -28.94 389.01 -10.17 -39.10 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.68 Total: 7.42 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -2.59 Total: -29.66 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.26 Total: -33.16 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.94 -10.17 -39.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246915112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.794 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds