Wall clock time and date at job start Tue Mar 31 2020 12:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 H 1.09003 * 109.47087 * 55.00920 * 3 2 1 5 5 C 1.52998 * 109.47724 * 295.00415 * 3 2 1 6 6 C 1.52992 * 109.47216 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47269 * 60.00045 * 6 5 3 8 8 C 1.52998 * 109.46965 * 300.00109 * 7 6 5 9 9 H 1.09004 * 109.46715 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.46944 * 299.99592 * 8 7 6 11 11 C 1.46902 * 110.99981 * 275.00049 * 10 8 7 12 12 H 1.09004 * 109.46880 * 35.00352 * 11 10 8 13 13 C 1.53001 * 109.47569 * 275.00263 * 11 10 8 14 14 C 1.50700 * 109.47083 * 154.99751 * 11 10 8 15 15 C 1.38300 * 119.92751 * 39.73520 * 14 11 10 16 16 C 1.38102 * 120.06766 * 179.72584 * 15 14 11 17 17 C 1.38874 * 119.93007 * 0.54033 * 16 15 14 18 18 O 1.35756 * 120.06821 * 179.75139 * 17 16 15 19 19 C 1.34834 * 116.99814 * 174.44171 * 18 17 16 20 20 H 1.08004 * 119.99898 * 5.05035 * 19 18 17 21 21 C 1.38646 * 119.99767 * 185.05810 * 19 18 17 22 22 N 1.31563 * 120.00225 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00032 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46980 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47309 * 119.99668 * 23 21 19 26 26 H 1.48503 * 109.46830 * 239.99898 * 23 21 19 27 27 C 1.38874 * 119.86214 * 359.72692 * 17 16 15 28 28 C 1.38100 * 119.93470 * 0.02562 * 27 17 16 29 29 C 1.52992 * 109.47216 * 59.99859 * 8 7 6 30 30 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46669 * 299.99120 * 1 2 3 32 32 H 1.09001 * 109.47411 * 59.99044 * 1 2 3 33 33 H 1.09000 * 109.46540 * 240.00734 * 2 1 3 34 34 H 1.08997 * 109.47653 * 120.00495 * 2 1 3 35 35 H 1.09003 * 109.46795 * 300.00126 * 5 3 2 36 36 H 1.09004 * 109.46715 * 60.00178 * 5 3 2 37 37 H 1.09003 * 109.47453 * 299.99860 * 6 5 3 38 38 H 1.08998 * 109.47124 * 179.97438 * 6 5 3 39 39 H 1.08996 * 109.47412 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47034 * 59.99558 * 7 6 5 41 41 H 1.00899 * 111.00041 * 38.95103 * 10 8 7 42 42 H 1.09001 * 109.46581 * 299.99968 * 13 11 10 43 43 H 1.08997 * 109.47163 * 59.99719 * 13 11 10 44 44 H 1.08996 * 109.47607 * 180.02562 * 13 11 10 45 45 H 1.08000 * 119.96834 * 359.97438 * 15 14 11 46 46 H 1.08002 * 120.03360 * 180.26632 * 16 15 14 47 47 H 0.97004 * 119.99656 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.03807 * 179.97438 * 27 17 16 49 49 H 1.07996 * 119.96857 * 179.97438 * 28 27 17 50 50 H 1.09003 * 109.47453 * 60.00140 * 29 8 7 51 51 H 1.09007 * 109.46973 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 2.1446 3.5693 -1.3068 7 6 3.6694 3.5718 -1.1809 8 6 4.0742 2.8876 0.1263 9 1 5.1606 2.8889 0.2158 10 7 3.4880 3.6136 1.2609 11 6 4.3400 4.7416 1.6609 12 1 4.8084 5.1744 0.7769 13 6 5.4232 4.2471 2.6216 14 6 3.4994 5.7874 2.3469 15 6 2.4962 5.4038 3.2183 16 6 1.7279 6.3600 3.8528 17 6 1.9560 7.7075 3.6066 18 8 1.1991 8.6496 4.2250 19 6 1.5467 9.9380 4.0315 20 1 2.3419 10.1853 3.3439 21 6 0.8834 10.9451 4.7156 22 7 -0.0856 10.6439 5.5530 23 14 1.3644 12.7301 4.4471 24 1 2.4740 12.8009 3.4626 25 1 0.1950 13.4857 3.9308 26 1 1.8072 13.3224 5.7349 27 6 2.9604 8.0893 2.7268 28 6 3.7287 7.1286 2.0992 29 6 3.5648 1.4450 0.1260 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8902 32 1 -0.3634 0.5140 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0698 1.5877 -2.1491 36 1 0.5488 2.1254 -1.3967 37 1 1.7096 4.1081 -0.4650 38 1 1.8566 4.0566 -2.2383 39 1 4.0324 4.5995 -1.1811 40 1 4.1044 3.0330 -2.0227 41 1 2.5527 3.9253 1.0464 42 1 4.9547 3.8143 3.5055 43 1 6.0312 3.4906 2.1254 44 1 6.0550 5.0840 2.9187 45 1 2.3162 4.3556 3.4058 46 1 0.9475 6.0599 4.5365 47 1 -0.5499 11.3486 6.0312 48 1 3.1400 9.1365 2.5329 49 1 4.5097 7.4249 1.4147 50 1 3.9998 0.9062 -0.7159 51 1 3.8536 0.9574 1.0571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246915112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:00 Heat of formation + Delta-G solvation = -49.481523 kcal Electronic energy + Delta-G solvation = -26960.957272 eV Core-core repulsion = 23437.724967 eV Total energy + Delta-G solvation = -3523.232305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.03120 -40.36097 -38.64562 -36.45452 -34.49762 -34.04005 -32.05412 -31.76837 -30.22589 -29.37436 -28.70883 -27.36177 -24.72268 -23.85210 -23.62231 -23.14377 -21.44971 -21.41569 -19.94477 -19.51076 -18.83896 -17.31625 -16.61773 -16.35068 -16.08653 -15.87111 -15.65449 -15.55261 -15.49641 -15.06095 -14.67599 -14.54197 -14.34346 -14.14397 -13.97144 -13.72797 -13.54160 -13.46738 -13.15038 -13.03686 -12.90659 -12.77298 -12.54115 -12.44922 -12.24182 -12.18955 -12.10877 -12.09234 -11.83882 -11.68374 -11.58623 -11.18082 -11.13787 -10.89758 -10.79334 -10.69193 -9.77556 -9.19568 -8.90611 -8.47701 -6.15823 0.60000 0.69109 1.34110 1.42476 1.52414 2.16885 2.81421 3.14849 3.33835 3.52649 3.80631 3.85367 3.92645 3.98073 4.10380 4.21979 4.25246 4.27813 4.42337 4.43123 4.54263 4.59808 4.61604 4.65531 4.68843 4.75673 4.76050 4.84343 4.87560 4.91101 4.98474 5.02604 5.10959 5.11987 5.14073 5.18417 5.22650 5.25522 5.29681 5.33455 5.38684 5.39819 5.45706 5.53263 5.58420 5.62071 5.71345 5.71915 5.78010 6.02804 6.21950 6.35080 6.58170 6.97208 7.78648 8.75871 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.002685 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.093133 B =10427.562340 C =10903.168430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.084 4.084 4 H 0.060 0.940 5 C -0.109 4.109 6 C -0.122 4.122 7 C -0.145 4.145 8 C 0.087 3.913 9 H 0.080 0.920 10 N -0.678 5.678 11 C 0.145 3.855 12 H 0.052 0.948 13 C -0.128 4.128 14 C -0.161 4.161 15 C -0.046 4.046 16 C -0.205 4.205 17 C 0.115 3.885 18 O -0.233 6.233 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.241 4.241 28 C -0.064 4.064 29 C -0.093 4.093 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.341 0.659 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.143 0.857 46 H 0.110 0.890 47 H 0.272 0.728 48 H 0.117 0.883 49 H 0.137 0.863 50 H 0.072 0.928 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 -19.007 -15.082 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.079 0.921 5 C -0.146 4.146 6 C -0.160 4.160 7 C -0.184 4.184 8 C -0.022 4.022 9 H 0.099 0.901 10 N -0.312 5.312 11 C 0.036 3.964 12 H 0.070 0.930 13 C -0.186 4.186 14 C -0.163 4.163 15 C -0.065 4.065 16 C -0.225 4.225 17 C 0.064 3.936 18 O -0.140 6.140 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.261 4.261 28 C -0.083 4.083 29 C -0.131 4.131 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.163 0.837 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.161 0.839 46 H 0.128 0.872 47 H 0.081 0.919 48 H 0.135 0.865 49 H 0.154 0.846 50 H 0.090 0.910 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.164 -19.367 -14.330 25.776 hybrid contribution -0.521 1.864 -0.331 1.964 sum 8.643 -17.503 -14.661 24.413 Atomic orbital electron populations 1.21829 0.96205 1.01582 1.01612 1.21522 0.95642 0.96104 1.01944 1.21102 0.95818 0.95878 0.97492 0.92143 1.21590 1.00465 0.94780 0.97811 1.21517 0.95843 0.97506 1.01157 1.22145 0.96166 1.00612 0.99451 1.21625 0.98835 0.94051 0.87719 0.90146 1.60823 1.05616 1.26244 1.38511 1.20157 0.92328 0.87973 0.95942 0.93039 1.21742 0.97124 1.00629 0.99133 1.19778 1.00152 0.93687 1.02636 1.20746 0.93270 0.98567 0.93876 1.20477 1.05324 0.90015 1.06641 1.19922 0.90978 0.90348 0.92307 1.83947 1.49893 1.15782 1.64407 1.21847 1.20676 0.79496 1.26826 0.88184 1.26585 0.95604 1.04947 0.94945 1.70196 1.23159 1.35384 1.27216 0.84535 0.78816 0.73944 0.78936 1.17494 1.19297 1.19331 1.21206 1.00889 1.00520 1.03461 1.20925 0.97605 0.92089 0.97671 1.21508 0.94980 0.94805 1.01842 0.92461 0.93577 0.92528 0.91556 0.92209 0.91365 0.92159 0.93505 0.91969 0.93048 0.90432 0.83739 0.92945 0.91497 0.92927 0.83889 0.87188 0.91855 0.86509 0.84558 0.90983 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.67 71.98 0.70 -1.53 16 2 C -0.11 -1.59 5.40 30.60 0.17 -1.43 16 3 C -0.08 -1.32 1.95 -10.79 -0.02 -1.34 16 4 H 0.06 1.19 7.21 -2.39 -0.02 1.17 16 5 C -0.11 -1.66 4.96 30.59 0.15 -1.50 16 6 C -0.12 -2.13 5.67 30.59 0.17 -1.96 16 7 C -0.14 -2.34 5.50 30.59 0.17 -2.17 16 8 C 0.09 1.45 2.67 44.91 0.12 1.57 16 9 H 0.08 1.28 7.12 -2.39 -0.02 1.26 16 10 N -0.68 -14.14 4.95 -473.31 -2.34 -16.48 16 11 C 0.15 3.38 2.63 44.17 0.12 3.49 16 12 H 0.05 1.13 6.97 -2.39 -0.02 1.12 16 13 C -0.13 -2.77 9.38 71.98 0.68 -2.10 16 14 C -0.16 -5.01 4.72 -19.83 -0.09 -5.10 16 15 C -0.05 -1.59 8.99 22.25 0.20 -1.39 16 16 C -0.21 -8.92 9.99 22.39 0.22 -8.70 16 17 C 0.11 5.79 6.65 22.57 0.15 5.94 16 18 O -0.23 -14.27 9.76 -22.85 -0.22 -14.49 16 19 C -0.41 -24.30 9.49 67.92 0.64 -23.65 16 20 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 22 N -0.92 -57.14 13.67 21.61 0.30 -56.84 16 23 Si 1.02 43.26 29.55 68.60 2.03 45.28 16 24 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 C -0.24 -10.60 9.17 22.39 0.21 -10.40 16 28 C -0.06 -2.22 9.66 22.25 0.21 -2.01 16 29 C -0.09 -1.38 4.92 30.59 0.15 -1.23 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.79 6.56 -2.39 -0.02 0.77 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.94 6.57 -2.39 -0.02 0.93 16 37 H 0.05 0.99 6.26 -2.39 -0.01 0.97 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.05 0.93 7.43 -2.39 -0.02 0.91 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.34 7.92 4.81 -89.70 -0.43 7.48 16 42 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.20 7.43 -2.39 -0.02 1.18 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.14 4.23 7.70 -2.91 -0.02 4.21 16 46 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 47 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 48 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 49 H 0.14 3.82 8.03 -2.91 -0.02 3.79 16 50 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -67.05 389.01 4.64 -62.42 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.47 Total: 34.51 kcal Atomic # 6 Polarization: -58.80 SS G_CDS: 4.41 Total: -54.39 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -2.05 Total: -73.32 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.22 Total: -14.49 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.05 4.64 -62.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246915112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.935 kcal (2) G-P(sol) polarization free energy of solvation -67.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds