Wall clock time and date at job start Tue Mar 31 2020 12:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47534 * 2 1 4 4 H 1.08996 * 109.46854 * 54.99716 * 3 2 1 5 5 C 1.53003 * 109.46747 * 294.99852 * 3 2 1 6 6 C 1.53001 * 109.46979 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46914 * 60.00363 * 6 5 3 8 8 C 1.53003 * 109.47001 * 299.99624 * 7 6 5 9 9 H 1.08996 * 109.47333 * 300.00539 * 8 7 6 10 10 N 1.46904 * 109.47108 * 180.02562 * 8 7 6 11 11 C 1.46895 * 111.00026 * 89.36537 * 10 8 7 12 12 H 1.08999 * 109.47071 * 320.62593 * 11 10 8 13 13 C 1.52995 * 109.47383 * 200.62384 * 11 10 8 14 14 C 1.50698 * 109.47428 * 80.62205 * 11 10 8 15 15 C 1.38297 * 119.93436 * 220.00355 * 14 11 10 16 16 C 1.38100 * 120.07308 * 180.02562 * 15 14 11 17 17 C 1.38882 * 119.92998 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.06974 * 179.97438 * 17 16 15 19 19 C 1.34830 * 117.00144 * 5.78226 * 18 17 16 20 20 H 1.07993 * 120.00041 * 354.91942 * 19 18 17 21 21 C 1.38658 * 119.99656 * 174.91774 * 19 18 17 22 22 N 1.31552 * 120.00433 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46872 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47180 * 59.99939 * 23 21 19 26 26 H 1.48499 * 109.46715 * 299.99936 * 23 21 19 27 27 C 1.38879 * 119.85885 * 0.25785 * 17 16 15 28 28 C 1.38106 * 119.92995 * 359.48904 * 27 17 16 29 29 C 1.52998 * 109.47280 * 175.00132 * 3 2 1 30 30 H 1.09009 * 109.47130 * 300.00391 * 1 2 3 31 31 H 1.08999 * 109.47110 * 59.99844 * 1 2 3 32 32 H 1.08998 * 109.47554 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47157 * 239.99333 * 2 1 3 34 34 H 1.09006 * 109.46842 * 119.99890 * 2 1 3 35 35 H 1.09001 * 109.47055 * 299.99970 * 5 3 2 36 36 H 1.09002 * 109.46727 * 60.00036 * 5 3 2 37 37 H 1.08996 * 109.47277 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.46988 * 300.00089 * 6 5 3 39 39 H 1.08997 * 109.47187 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.47330 * 59.99595 * 7 6 5 41 41 H 1.00897 * 110.99904 * 325.40864 * 10 8 7 42 42 H 1.08998 * 109.47559 * 304.99640 * 13 11 10 43 43 H 1.09001 * 109.47016 * 64.99488 * 13 11 10 44 44 H 1.08998 * 109.47533 * 184.99526 * 13 11 10 45 45 H 1.08001 * 119.96598 * 0.04597 * 15 14 11 46 46 H 1.07997 * 120.03912 * 179.97438 * 16 15 14 47 47 H 0.97002 * 119.99952 * 359.97438 * 22 21 19 48 48 H 1.08001 * 120.03512 * 179.72593 * 27 17 16 49 49 H 1.07997 * 119.96195 * 180.27566 * 28 27 17 50 50 H 1.09001 * 109.47330 * 59.99535 * 29 3 2 51 51 H 1.09004 * 109.46617 * 299.99579 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1449 3.5692 -1.3072 7 6 3.6696 3.5714 -1.1813 8 6 4.0744 2.8874 0.1262 9 1 3.6394 3.4262 0.9679 10 7 5.5384 2.8901 0.2474 11 6 6.0082 4.1052 0.9263 12 1 5.4210 4.9595 0.5896 13 6 7.4833 4.3373 0.5935 14 6 5.8489 3.9419 2.4159 15 6 5.4126 5.0060 3.1840 16 6 5.2661 4.8597 4.5494 17 6 5.5570 3.6422 5.1510 18 8 5.4145 3.4954 6.4930 19 6 4.8738 4.5298 7.1679 20 1 4.6521 5.4533 6.6538 21 6 4.6023 4.4078 8.5222 22 7 4.8727 3.2831 9.1486 23 14 3.8524 5.8408 9.4571 24 1 3.6622 5.4585 10.8794 25 1 2.5393 6.1899 8.8580 26 1 4.7603 7.0131 9.3773 27 6 5.9995 2.5770 4.3776 28 6 6.1389 2.7281 3.0119 29 6 3.5649 1.4442 0.1257 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 2.0699 1.5874 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 1.8570 4.0563 -2.2388 38 1 1.7099 4.1079 -0.4655 39 1 4.0326 4.5992 -1.1806 40 1 4.1046 3.0325 -2.0230 41 1 5.9762 2.7883 -0.6559 42 1 8.0580 3.4471 0.8491 43 1 7.5874 4.5435 -0.4717 44 1 7.8557 5.1868 1.1661 45 1 5.1859 5.9523 2.7155 46 1 4.9258 5.6911 5.1488 47 1 5.2617 2.5389 8.6631 48 1 6.2307 1.6303 4.8431 49 1 6.4787 1.8988 2.4094 50 1 3.9995 0.9051 -0.7161 51 1 3.8531 0.9569 1.0571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246915138.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:05 Heat of formation + Delta-G solvation = -44.597840 kcal Electronic energy + Delta-G solvation = -26993.553977 eV Core-core repulsion = 23470.533444 eV Total energy + Delta-G solvation = -3523.020533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.64387 -38.92456 -37.28452 -35.49579 -33.57163 -32.20876 -31.29804 -30.13760 -29.48357 -28.08879 -27.27040 -24.94640 -23.86537 -22.60672 -22.26541 -21.76068 -20.60223 -20.09696 -19.67661 -18.24809 -16.77643 -15.85608 -15.60909 -15.18147 -14.96884 -14.75882 -14.42242 -14.01098 -13.87791 -13.70987 -13.64677 -13.59364 -13.46351 -13.06532 -12.88775 -12.63219 -12.54295 -12.35508 -11.93838 -11.83762 -11.60076 -11.46409 -11.31213 -11.15361 -11.05650 -10.95688 -10.81147 -10.71873 -10.55625 -10.45382 -10.27923 -10.25706 -10.14049 -10.11741 -9.34487 -8.71870 -8.29039 -8.12967 -7.15951 -6.72882 -4.01825 2.24663 2.35995 3.25137 3.30214 3.46792 4.09829 4.14980 4.52916 4.59226 4.63354 4.82641 4.91705 4.97104 5.09595 5.12508 5.16948 5.21739 5.27915 5.36084 5.38028 5.46640 5.47765 5.51693 5.53752 5.54993 5.66888 5.67779 5.78145 5.83369 5.87135 5.90125 5.92155 5.95804 6.02199 6.04420 6.06517 6.15241 6.18873 6.24589 6.28389 6.39828 6.42553 6.47390 6.75092 6.89150 7.08699 7.16092 7.33738 7.49250 7.56002 7.62569 7.83118 8.44999 8.97038 9.67251 10.71340 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003211 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.774648 B = 8718.398543 C = 9907.526832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.070 0.930 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.145 4.145 8 C 0.091 3.909 9 H 0.079 0.921 10 N -0.677 5.677 11 C 0.141 3.859 12 H 0.039 0.961 13 C -0.146 4.146 14 C -0.172 4.172 15 C -0.072 4.072 16 C -0.232 4.232 17 C 0.157 3.843 18 O -0.205 6.205 19 C -0.471 4.471 20 H 0.082 0.918 21 C 0.009 3.991 22 N -0.883 5.883 23 Si 1.095 2.905 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.202 4.202 28 C -0.040 4.040 29 C -0.097 4.097 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.334 0.666 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.125 0.875 47 H 0.282 0.718 48 H 0.112 0.888 49 H 0.119 0.881 50 H 0.057 0.943 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -1.084 -22.287 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.088 0.912 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.184 4.184 8 C -0.019 4.019 9 H 0.097 0.903 10 N -0.307 5.307 11 C 0.032 3.968 12 H 0.057 0.943 13 C -0.204 4.204 14 C -0.173 4.173 15 C -0.090 4.090 16 C -0.251 4.251 17 C 0.105 3.895 18 O -0.110 6.110 19 C -0.548 4.548 20 H 0.100 0.900 21 C -0.196 4.196 22 N -0.516 5.516 23 Si 0.919 3.081 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.221 4.221 28 C -0.059 4.059 29 C -0.136 4.136 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.153 0.847 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.143 0.857 47 H 0.092 0.908 48 H 0.130 0.870 49 H 0.137 0.863 50 H 0.076 0.924 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.198 -1.174 -19.990 20.459 hybrid contribution 0.357 0.395 -2.312 2.373 sum -3.841 -0.779 -22.302 22.644 Atomic orbital electron populations 1.21826 0.96136 1.01329 1.01830 1.21543 0.95653 0.96451 1.01933 1.21197 0.95910 0.95784 0.97897 0.91153 1.21626 1.00366 0.95441 0.97613 1.21467 0.95423 0.97014 1.01513 1.22254 0.96615 1.00571 0.98978 1.21560 0.87756 0.96257 0.96304 0.90270 1.60538 1.05587 1.39242 1.25285 1.20149 0.94777 0.90172 0.91701 0.94329 1.21926 0.95862 1.02577 1.00052 1.19149 1.09765 0.94913 0.93467 1.20589 0.97976 0.97143 0.93327 1.21088 1.10545 0.98568 0.94929 1.19259 0.92998 0.93075 0.84218 1.83665 1.70945 1.42093 1.14289 1.22177 1.44821 0.93275 0.94479 0.90038 1.26501 0.97112 1.03413 0.92555 1.70568 1.37730 1.03719 1.39543 0.83122 0.76081 0.72575 0.76316 1.19790 1.20797 1.20788 1.20261 1.10489 0.97964 0.93421 1.20438 0.96495 0.96455 0.92506 1.21518 0.93654 0.96056 1.02324 0.92701 0.92715 0.93050 0.92272 0.91840 0.92260 0.92029 0.92399 0.91952 0.92514 0.92086 0.84746 0.91726 0.93462 0.91927 0.88002 0.85739 0.90833 0.87005 0.86315 0.92405 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 37.15 0.36 -0.95 16 2 C -0.12 -1.09 5.40 -26.73 -0.14 -1.24 16 3 C -0.09 -0.89 2.19 -90.62 -0.20 -1.09 16 4 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 5 C -0.11 -0.98 4.96 -26.73 -0.13 -1.12 16 6 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 7 C -0.15 -1.37 5.17 -26.73 -0.14 -1.51 16 8 C 0.09 1.04 2.26 -67.68 -0.15 0.89 16 9 H 0.08 1.13 7.43 -51.93 -0.39 0.74 16 10 N -0.68 -7.88 5.30 -100.93 -0.53 -8.41 16 11 C 0.14 1.84 2.66 -68.87 -0.18 1.66 16 12 H 0.04 0.50 7.32 -51.93 -0.38 0.12 16 13 C -0.15 -1.68 9.20 37.15 0.34 -1.34 16 14 C -0.17 -2.91 4.39 -104.58 -0.46 -3.37 16 15 C -0.07 -1.33 9.66 -39.61 -0.38 -1.72 16 16 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 17 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 18 O -0.21 -5.92 9.16 0.06 0.00 -5.92 16 19 C -0.47 -13.54 9.49 30.89 0.29 -13.25 16 20 H 0.08 2.21 5.21 -52.49 -0.27 1.93 16 21 C 0.01 0.26 5.49 -17.52 -0.10 0.17 16 22 N -0.88 -26.81 13.70 55.48 0.76 -26.05 16 23 Si 1.09 24.07 29.92 -169.99 -5.09 18.99 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.20 -4.36 9.99 -39.39 -0.39 -4.76 16 28 C -0.04 -0.74 9.32 -39.61 -0.37 -1.11 16 29 C -0.10 -1.07 4.81 -26.71 -0.13 -1.20 16 30 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.05 0.43 6.56 -51.93 -0.34 0.08 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 40 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.33 3.31 8.09 -39.29 -0.32 2.99 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 46 H 0.12 2.84 5.64 -52.49 -0.30 2.54 16 47 H 0.28 8.75 7.97 -40.82 -0.33 8.43 16 48 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 49 H 0.12 1.96 7.71 -52.49 -0.40 1.56 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 396.06 15.07 5.97 5.97 Total: -1.00 -30.05 396.06 -10.48 -40.53 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -9.02 Total: 7.94 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -2.56 Total: -33.05 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.22 Total: -34.46 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: 0.00 Total: -5.92 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.09 Total: 18.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.05 -10.48 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246915138.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.068 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds