Wall clock time and date at job start Tue Mar 31 2020 12:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47534 * 2 1 4 4 H 1.08996 * 109.46854 * 54.99716 * 3 2 1 5 5 C 1.53003 * 109.46747 * 294.99852 * 3 2 1 6 6 C 1.53001 * 109.46979 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46914 * 60.00363 * 6 5 3 8 8 C 1.53003 * 109.47001 * 299.99624 * 7 6 5 9 9 H 1.08996 * 109.47333 * 300.00539 * 8 7 6 10 10 N 1.46904 * 109.47108 * 180.02562 * 8 7 6 11 11 C 1.46895 * 111.00026 * 89.36537 * 10 8 7 12 12 H 1.08999 * 109.47071 * 320.62593 * 11 10 8 13 13 C 1.52995 * 109.47383 * 200.62384 * 11 10 8 14 14 C 1.50698 * 109.47428 * 80.62205 * 11 10 8 15 15 C 1.38297 * 119.93436 * 220.00355 * 14 11 10 16 16 C 1.38100 * 120.07308 * 180.02562 * 15 14 11 17 17 C 1.38882 * 119.92998 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.06974 * 179.97438 * 17 16 15 19 19 C 1.34830 * 117.00144 * 5.78226 * 18 17 16 20 20 H 1.07993 * 120.00041 * 354.91942 * 19 18 17 21 21 C 1.38658 * 119.99656 * 174.91774 * 19 18 17 22 22 N 1.31552 * 120.00433 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46872 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47180 * 59.99939 * 23 21 19 26 26 H 1.48499 * 109.46715 * 299.99936 * 23 21 19 27 27 C 1.38879 * 119.85885 * 0.25785 * 17 16 15 28 28 C 1.38106 * 119.92995 * 359.48904 * 27 17 16 29 29 C 1.52998 * 109.47280 * 175.00132 * 3 2 1 30 30 H 1.09009 * 109.47130 * 300.00391 * 1 2 3 31 31 H 1.08999 * 109.47110 * 59.99844 * 1 2 3 32 32 H 1.08998 * 109.47554 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47157 * 239.99333 * 2 1 3 34 34 H 1.09006 * 109.46842 * 119.99890 * 2 1 3 35 35 H 1.09001 * 109.47055 * 299.99970 * 5 3 2 36 36 H 1.09002 * 109.46727 * 60.00036 * 5 3 2 37 37 H 1.08996 * 109.47277 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.46988 * 300.00089 * 6 5 3 39 39 H 1.08997 * 109.47187 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.47330 * 59.99595 * 7 6 5 41 41 H 1.00897 * 110.99904 * 325.40864 * 10 8 7 42 42 H 1.08998 * 109.47559 * 304.99640 * 13 11 10 43 43 H 1.09001 * 109.47016 * 64.99488 * 13 11 10 44 44 H 1.08998 * 109.47533 * 184.99526 * 13 11 10 45 45 H 1.08001 * 119.96598 * 0.04597 * 15 14 11 46 46 H 1.07997 * 120.03912 * 179.97438 * 16 15 14 47 47 H 0.97002 * 119.99952 * 359.97438 * 22 21 19 48 48 H 1.08001 * 120.03512 * 179.72593 * 27 17 16 49 49 H 1.07997 * 119.96195 * 180.27566 * 28 27 17 50 50 H 1.09001 * 109.47330 * 59.99535 * 29 3 2 51 51 H 1.09004 * 109.46617 * 299.99579 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1449 3.5692 -1.3072 7 6 3.6696 3.5714 -1.1813 8 6 4.0744 2.8874 0.1262 9 1 3.6394 3.4262 0.9679 10 7 5.5384 2.8901 0.2474 11 6 6.0082 4.1052 0.9263 12 1 5.4210 4.9595 0.5896 13 6 7.4833 4.3373 0.5935 14 6 5.8489 3.9419 2.4159 15 6 5.4126 5.0060 3.1840 16 6 5.2661 4.8597 4.5494 17 6 5.5570 3.6422 5.1510 18 8 5.4145 3.4954 6.4930 19 6 4.8738 4.5298 7.1679 20 1 4.6521 5.4533 6.6538 21 6 4.6023 4.4078 8.5222 22 7 4.8727 3.2831 9.1486 23 14 3.8524 5.8408 9.4571 24 1 3.6622 5.4585 10.8794 25 1 2.5393 6.1899 8.8580 26 1 4.7603 7.0131 9.3773 27 6 5.9995 2.5770 4.3776 28 6 6.1389 2.7281 3.0119 29 6 3.5649 1.4442 0.1257 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 2.0699 1.5874 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 1.8570 4.0563 -2.2388 38 1 1.7099 4.1079 -0.4655 39 1 4.0326 4.5992 -1.1806 40 1 4.1046 3.0325 -2.0230 41 1 5.9762 2.7883 -0.6559 42 1 8.0580 3.4471 0.8491 43 1 7.5874 4.5435 -0.4717 44 1 7.8557 5.1868 1.1661 45 1 5.1859 5.9523 2.7155 46 1 4.9258 5.6911 5.1488 47 1 5.2617 2.5389 8.6631 48 1 6.2307 1.6303 4.8431 49 1 6.4787 1.8988 2.4094 50 1 3.9995 0.9051 -0.7161 51 1 3.8531 0.9569 1.0571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246915138.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:05 Heat of formation + Delta-G solvation = -60.314094 kcal Electronic energy + Delta-G solvation = -26994.235485 eV Core-core repulsion = 23470.533444 eV Total energy + Delta-G solvation = -3523.702041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.02923 -40.22003 -38.79198 -36.75633 -34.58971 -34.11413 -32.31384 -31.80436 -30.38637 -29.52363 -28.13681 -26.99663 -24.64041 -24.04215 -23.58590 -22.95354 -21.63869 -21.30375 -20.62515 -20.12246 -18.67262 -17.12491 -16.70132 -16.51432 -16.14354 -15.78218 -15.68238 -15.61644 -15.40094 -15.32225 -14.75293 -14.65038 -14.40996 -14.36156 -14.06139 -13.86806 -13.76355 -13.30311 -13.04489 -12.86124 -12.73110 -12.68260 -12.44753 -12.35296 -12.21965 -12.14037 -11.99940 -11.94657 -11.91765 -11.80604 -11.61004 -11.33949 -11.26314 -10.98548 -10.94346 -10.74048 -9.81220 -9.24722 -8.97471 -8.92145 -6.24747 0.55786 0.67578 1.46791 1.59737 1.77401 2.35274 2.82263 3.09535 3.20436 3.36347 3.74411 3.83370 3.95229 4.03958 4.07451 4.13808 4.19307 4.22754 4.34102 4.38304 4.42294 4.49499 4.55281 4.58516 4.67811 4.69462 4.71693 4.78636 4.79715 4.84860 4.95207 4.96396 5.06067 5.07047 5.13359 5.16056 5.18650 5.25489 5.26325 5.27038 5.31586 5.34549 5.37820 5.44299 5.56550 5.57910 5.61676 5.72052 5.76716 6.07699 6.24049 6.30928 6.68173 6.86631 7.63830 8.50049 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003211 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.774648 B = 8718.398543 C = 9907.526832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.087 4.087 4 H 0.047 0.953 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.137 4.137 8 C 0.094 3.906 9 H 0.047 0.953 10 N -0.680 5.680 11 C 0.145 3.855 12 H 0.050 0.950 13 C -0.143 4.143 14 C -0.142 4.142 15 C -0.071 4.071 16 C -0.241 4.241 17 C 0.114 3.886 18 O -0.256 6.256 19 C -0.488 4.488 20 H 0.089 0.911 21 C -0.045 4.045 22 N -0.918 5.918 23 Si 1.145 2.855 24 H -0.272 1.272 25 H -0.261 1.261 26 H -0.259 1.259 27 C -0.210 4.210 28 C -0.034 4.034 29 C -0.093 4.093 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.352 0.648 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.136 0.864 46 H 0.114 0.886 47 H 0.259 0.741 48 H 0.108 0.892 49 H 0.143 0.857 50 H 0.072 0.928 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 0.197 -26.625 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.106 4.106 4 H 0.065 0.935 5 C -0.145 4.145 6 C -0.155 4.155 7 C -0.176 4.176 8 C -0.016 4.016 9 H 0.065 0.935 10 N -0.312 5.312 11 C 0.035 3.965 12 H 0.068 0.932 13 C -0.200 4.200 14 C -0.143 4.143 15 C -0.090 4.090 16 C -0.260 4.260 17 C 0.065 3.935 18 O -0.164 6.164 19 C -0.564 4.564 20 H 0.107 0.893 21 C -0.241 4.241 22 N -0.553 5.553 23 Si 0.960 3.040 24 H -0.197 1.197 25 H -0.186 1.186 26 H -0.184 1.184 27 C -0.230 4.230 28 C -0.052 4.052 29 C -0.131 4.131 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.173 0.827 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.154 0.846 46 H 0.132 0.868 47 H 0.067 0.933 48 H 0.126 0.874 49 H 0.161 0.839 50 H 0.090 0.910 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.291 0.104 -24.412 24.787 hybrid contribution 0.454 -0.073 -1.352 1.428 sum -3.837 0.030 -25.765 26.049 Atomic orbital electron populations 1.21817 0.95527 1.01829 1.01827 1.21530 0.96207 0.95897 1.01835 1.21160 0.95184 0.96205 0.98097 0.93452 1.21588 1.00878 0.95210 0.96815 1.21477 0.95151 0.97102 1.01737 1.22166 0.96880 1.00555 0.97971 1.21477 0.87439 0.96219 0.96432 0.93483 1.60402 1.05841 1.38396 1.26525 1.20130 0.96570 0.91234 0.88547 0.93167 1.21886 0.93822 1.02229 1.02074 1.19746 1.05070 0.93382 0.96145 1.20943 0.97077 0.99170 0.91794 1.21189 1.10802 0.97412 0.96640 1.19792 0.95157 0.95077 0.83495 1.83641 1.73574 1.42804 1.16349 1.22572 1.44863 0.93791 0.95145 0.89327 1.28401 0.96768 1.05199 0.93732 1.70708 1.40886 1.04366 1.39355 0.82603 0.76564 0.69911 0.74930 1.19684 1.18551 1.18382 1.20513 1.10333 0.97305 0.94816 1.20715 0.95552 0.97878 0.91062 1.21461 0.94373 0.95779 1.01494 0.93809 0.91599 0.92339 0.91014 0.93265 0.91024 0.91419 0.90796 0.93381 0.92286 0.90418 0.82750 0.92093 0.90370 0.92437 0.84634 0.86818 0.93259 0.87377 0.83895 0.90975 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.72 16 2 C -0.12 -2.03 5.40 30.59 0.17 -1.87 16 3 C -0.09 -1.64 2.19 -10.79 -0.02 -1.67 16 4 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.11 -1.58 4.96 30.60 0.15 -1.43 16 6 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 7 C -0.14 -2.08 5.17 30.59 0.16 -1.93 16 8 C 0.09 1.92 2.26 44.93 0.10 2.02 16 9 H 0.05 1.27 7.43 -2.39 -0.02 1.26 16 10 N -0.68 -13.42 5.30 -473.24 -2.51 -15.93 16 11 C 0.14 3.23 2.66 44.17 0.12 3.35 16 12 H 0.05 1.08 7.32 -2.39 -0.02 1.06 16 13 C -0.14 -2.65 9.20 71.98 0.66 -1.99 16 14 C -0.14 -4.52 4.39 -19.84 -0.09 -4.61 16 15 C -0.07 -2.56 9.66 22.25 0.21 -2.34 16 16 C -0.24 -11.03 9.17 22.39 0.21 -10.82 16 17 C 0.11 5.92 6.65 22.58 0.15 6.07 16 18 O -0.26 -15.82 9.16 -22.69 -0.21 -16.03 16 19 C -0.49 -29.55 9.49 67.92 0.64 -28.91 16 20 H 0.09 5.02 5.21 -2.91 -0.02 5.00 16 21 C -0.05 -2.68 5.49 84.84 0.47 -2.21 16 22 N -0.92 -59.02 13.70 21.61 0.30 -58.73 16 23 Si 1.14 49.37 29.92 68.60 2.05 51.42 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 27 C -0.21 -9.40 9.99 22.39 0.22 -9.17 16 28 C -0.03 -1.20 9.32 22.25 0.21 -1.00 16 29 C -0.09 -1.89 4.81 30.61 0.15 -1.74 16 30 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 0.89 6.56 -2.39 -0.02 0.87 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.93 6.56 -2.39 -0.02 0.92 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.90 7.71 -2.39 -0.02 0.88 16 40 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.35 5.28 8.09 -89.70 -0.73 4.55 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.14 3.95 8.03 -2.91 -0.02 3.93 16 46 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 47 H 0.26 17.40 7.97 -92.71 -0.74 16.66 16 48 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 49 H 0.14 4.42 7.71 -2.91 -0.02 4.40 16 50 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -71.23 396.06 4.21 -67.02 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.20 Total: 33.78 kcal Atomic # 6 Polarization: -65.91 SS G_CDS: 4.38 Total: -61.53 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.21 Total: -74.65 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.21 Total: -16.03 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Total: -71.23 4.21 -67.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246915138.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.701 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds