Wall clock time and date at job start Tue Mar 31 2020 12:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 H 1.09001 * 109.47012 * 54.33244 * 3 2 1 5 5 C 1.52997 * 109.47366 * 294.32982 * 3 2 1 6 6 C 1.52999 * 109.47205 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46798 * 60.00042 * 6 5 3 8 8 C 1.52997 * 109.47208 * 299.99956 * 7 6 5 9 9 C 1.52999 * 109.47205 * 60.00293 * 8 7 6 10 10 H 1.08998 * 109.47040 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.47376 * 59.99624 * 9 8 7 12 12 C 1.46898 * 111.00087 * 136.32917 * 11 9 8 13 13 H 1.09010 * 109.46766 * 35.65202 * 12 11 9 14 14 C 1.52999 * 109.47502 * 275.65072 * 12 11 9 15 15 C 1.50702 * 109.47106 * 155.64587 * 12 11 9 16 16 C 1.38299 * 119.92825 * 39.73037 * 15 12 11 17 17 C 1.38102 * 120.06726 * 179.72252 * 16 15 12 18 18 C 1.38873 * 119.92887 * 0.56866 * 17 16 15 19 19 O 1.35752 * 120.06940 * 179.68000 * 18 17 16 20 20 C 1.34833 * 117.00524 * 185.80326 * 19 18 17 21 21 H 1.08005 * 119.99621 * 5.28414 * 20 19 18 22 22 C 1.38650 * 120.00655 * 185.29035 * 20 19 18 23 23 N 1.31561 * 119.99311 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00386 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46931 * 60.00031 * 24 22 20 26 26 H 1.48497 * 109.47363 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47492 * 300.00025 * 24 22 20 28 28 C 1.38882 * 119.86653 * 359.70804 * 18 17 16 29 29 C 1.38102 * 119.92371 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47121 * 59.99446 * 1 2 3 31 31 H 1.08996 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46929 * 300.00311 * 1 2 3 33 33 H 1.09000 * 109.47324 * 240.00055 * 2 1 3 34 34 H 1.09000 * 109.47121 * 120.00554 * 2 1 3 35 35 H 1.09001 * 109.47269 * 300.00104 * 5 3 2 36 36 H 1.08994 * 109.46898 * 60.00046 * 5 3 2 37 37 H 1.09000 * 109.47512 * 179.97438 * 6 5 3 38 38 H 1.09001 * 109.47367 * 300.00380 * 6 5 3 39 39 H 1.08996 * 109.47019 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.46885 * 60.00043 * 7 6 5 41 41 H 1.09001 * 109.47269 * 299.99853 * 8 7 6 42 42 H 1.09001 * 109.46662 * 180.02562 * 8 7 6 43 43 H 1.00904 * 110.99722 * 12.37834 * 11 9 8 44 44 H 1.08996 * 109.47079 * 175.06311 * 14 12 11 45 45 H 1.09000 * 109.46514 * 295.06408 * 14 12 11 46 46 H 1.08995 * 109.47010 * 55.06093 * 14 12 11 47 47 H 1.07997 * 119.96719 * 359.97438 * 16 15 12 48 48 H 1.08005 * 120.03389 * 180.27617 * 17 16 15 49 49 H 0.97001 * 119.98988 * 180.02562 * 23 22 20 50 50 H 1.07994 * 120.03748 * 179.97438 * 28 18 17 51 51 H 1.08001 * 119.96086 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5962 1.9847 0.8349 5 6 1.6498 2.1214 -1.3143 6 6 2.1593 3.5641 -1.3140 7 6 3.6827 3.5668 -1.1712 8 6 4.0729 2.8879 0.1431 9 6 3.5634 1.4452 0.1428 10 1 3.8411 0.9616 1.0794 11 7 4.1620 0.7147 -0.9823 12 6 4.6085 -0.6211 -0.5648 13 1 3.9143 -1.0218 0.1740 14 6 6.0063 -0.5228 0.0494 15 6 4.6493 -1.5343 -1.7629 16 6 5.1070 -1.0583 -2.9781 17 6 5.1510 -1.8943 -4.0764 18 6 4.7240 -3.2109 -3.9627 19 8 4.7599 -4.0333 -5.0421 20 6 4.2204 -5.2602 -4.8953 21 1 3.7103 -5.5197 -3.9793 22 6 4.3203 -6.1888 -5.9200 23 7 4.9413 -5.8725 -7.0359 24 14 3.5735 -7.8887 -5.7163 25 1 2.1115 -7.7629 -5.4875 26 1 3.8148 -8.6861 -6.9455 27 1 4.1996 -8.5685 -4.5539 28 6 4.2595 -3.6843 -2.7425 29 6 4.2242 -2.8451 -1.6462 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0936 1.5791 -2.1492 36 1 0.5646 2.1198 -1.4158 37 1 1.8817 4.0477 -2.2506 38 1 1.7152 4.1062 -0.4792 39 1 4.0458 4.5946 -1.1714 40 1 4.1269 3.0248 -2.0061 41 1 3.6288 3.4299 0.9780 42 1 5.1582 2.8903 0.2450 43 1 4.9216 1.2387 -1.3905 44 1 6.3016 -1.4973 0.4383 45 1 6.7170 -0.2056 -0.7137 46 1 5.9961 0.2045 0.8612 47 1 5.4341 -0.0330 -3.0672 48 1 5.5127 -1.5233 -5.0241 49 1 5.0108 -6.5221 -7.7530 50 1 3.9264 -4.7075 -2.6510 51 1 3.8627 -3.2126 -0.6971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252425870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:00 Heat of formation + Delta-G solvation = -32.838787 kcal Electronic energy + Delta-G solvation = -27420.180509 eV Core-core repulsion = 23897.669886 eV Total energy + Delta-G solvation = -3522.510622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.86798 -38.86059 -36.96595 -34.84151 -33.97511 -32.24443 -31.11373 -30.11094 -29.18304 -27.98680 -27.52272 -25.34850 -23.96254 -22.58016 -22.35230 -21.70162 -20.68721 -19.92693 -19.09132 -17.84357 -16.96015 -15.99616 -15.65555 -14.99858 -14.76377 -14.48613 -14.20770 -14.14618 -13.97994 -13.57913 -13.50112 -13.34600 -13.30844 -12.99219 -12.68349 -12.58480 -12.52267 -12.26629 -12.07240 -11.81092 -11.64536 -11.48903 -11.42922 -11.23390 -11.10405 -11.00019 -10.74304 -10.68135 -10.55460 -10.47641 -10.35346 -10.26806 -10.01841 -9.89550 -9.29616 -8.76954 -8.21319 -8.07029 -7.07149 -6.40106 -3.98654 2.31010 2.41836 3.15871 3.16694 3.19439 4.00806 4.22474 4.59627 4.63484 4.66315 4.81488 5.07768 5.12473 5.14069 5.19457 5.25213 5.26620 5.35612 5.38416 5.42908 5.46612 5.48376 5.53991 5.63755 5.71284 5.72834 5.74014 5.84562 5.85061 5.92359 5.93542 6.02907 6.04411 6.08717 6.15879 6.20933 6.23731 6.28581 6.32176 6.40441 6.48926 6.50857 6.67933 6.79341 6.95943 7.13384 7.16264 7.38016 7.50862 7.53823 7.54185 7.91683 8.05304 9.05854 9.77868 10.78240 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002970 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.950614 B = 9425.972219 C = 9801.166657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.068 4.068 4 H 0.058 0.942 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.091 3.909 10 H 0.049 0.951 11 N -0.667 5.667 12 C 0.139 3.861 13 H 0.077 0.923 14 C -0.176 4.176 15 C -0.162 4.162 16 C -0.053 4.053 17 C -0.195 4.195 18 C 0.153 3.847 19 O -0.181 6.181 20 C -0.390 4.390 21 H 0.090 0.910 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.939 3.061 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.271 1.271 28 C -0.232 4.232 29 C -0.069 4.069 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.338 0.662 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.046 0.954 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.269 0.731 50 H 0.124 0.876 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 15.885 15.480 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.087 4.087 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.166 4.166 9 C -0.019 4.019 10 H 0.067 0.933 11 N -0.299 5.299 12 C 0.030 3.970 13 H 0.095 0.905 14 C -0.235 4.235 15 C -0.163 4.163 16 C -0.071 4.071 17 C -0.214 4.214 18 C 0.099 3.901 19 O -0.085 6.085 20 C -0.466 4.466 21 H 0.107 0.893 22 C -0.165 4.165 23 N -0.500 5.500 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.196 1.196 28 C -0.252 4.252 29 C -0.088 4.088 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.157 0.843 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.125 0.875 48 H 0.131 0.869 49 H 0.079 0.921 50 H 0.142 0.858 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.094 15.579 14.778 21.860 hybrid contribution 0.430 -0.722 0.720 1.106 sum -3.663 14.857 15.497 21.779 Atomic orbital electron populations 1.21816 0.96674 1.01236 1.01198 1.21547 0.94917 0.96500 1.02499 1.21106 0.94147 0.95970 0.97511 0.92373 1.21519 0.99599 0.94817 0.98694 1.21493 0.95485 0.97466 1.00892 1.21466 0.96470 0.99610 0.97754 1.21868 1.00124 0.96101 0.98493 1.21550 0.94959 0.92578 0.92785 0.93292 1.60646 1.36291 1.03050 1.29873 1.20338 0.93889 0.88550 0.94239 0.90523 1.22524 0.98711 1.01827 1.00473 1.19059 1.08589 0.94050 0.94645 1.20289 0.97675 0.97466 0.91716 1.20197 1.09706 0.92087 0.99416 1.19393 0.92694 0.90775 0.87219 1.83990 1.69381 1.24251 1.30845 1.21246 1.34294 0.87515 1.03584 0.89277 1.25262 0.97076 0.99414 0.94784 1.70035 1.39746 1.35476 1.04761 0.85810 0.79330 0.80399 0.78062 1.19530 1.20327 1.19572 1.21098 1.09958 1.00997 0.93122 1.20528 0.98099 0.93041 0.97092 0.92622 0.93133 0.93595 0.90049 0.93217 0.90077 0.92868 0.92489 0.92930 0.92792 0.91145 0.91797 0.92345 0.84263 0.92168 0.92416 0.93537 0.87469 0.86869 0.92068 0.85832 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.68 37.16 0.36 -1.20 16 2 C -0.12 -1.30 4.14 -26.73 -0.11 -1.41 16 3 C -0.07 -0.67 2.00 -90.62 -0.18 -0.86 16 4 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.11 -1.12 4.81 -26.73 -0.13 -1.24 16 6 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 7 C -0.12 -0.98 5.74 -26.73 -0.15 -1.13 16 8 C -0.13 -1.05 5.26 -26.73 -0.14 -1.19 16 9 C 0.09 0.87 2.19 -67.71 -0.15 0.72 16 10 H 0.05 0.48 7.15 -51.93 -0.37 0.11 16 11 N -0.67 -7.32 3.96 -100.95 -0.40 -7.72 16 12 C 0.14 1.74 1.88 -68.87 -0.13 1.61 16 13 H 0.08 0.96 6.24 -51.92 -0.32 0.64 16 14 C -0.18 -1.99 9.14 37.16 0.34 -1.65 16 15 C -0.16 -2.64 4.96 -104.58 -0.52 -3.16 16 16 C -0.05 -0.92 9.32 -39.61 -0.37 -1.29 16 17 C -0.19 -4.13 9.99 -39.40 -0.39 -4.53 16 18 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 19 O -0.18 -5.24 9.76 0.04 0.00 -5.23 16 20 C -0.39 -11.04 9.44 30.88 0.29 -10.75 16 21 H 0.09 2.34 5.29 -52.48 -0.28 2.06 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 24 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 C -0.23 -5.07 9.13 -39.39 -0.36 -5.43 16 29 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 30 H 0.05 0.57 6.59 -51.93 -0.34 0.23 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 1.11 7.34 -51.93 -0.38 0.73 16 34 H 0.05 0.54 7.72 -51.93 -0.40 0.14 16 35 H 0.08 1.01 7.60 -51.93 -0.39 0.61 16 36 H 0.05 0.54 6.59 -51.93 -0.34 0.20 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.66 6.98 -51.93 -0.36 0.30 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.34 3.57 6.26 -39.29 -0.25 3.32 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.45 7.68 -51.93 -0.40 0.06 16 47 H 0.11 1.60 7.21 -52.49 -0.38 1.22 16 48 H 0.11 2.35 8.06 -52.48 -0.42 1.93 16 49 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.12 2.73 5.71 -52.49 -0.30 2.43 16 51 H 0.10 1.60 8.03 -52.49 -0.42 1.18 16 LS Contribution 387.86 15.07 5.85 5.85 Total: -1.00 -29.36 387.86 -10.09 -39.44 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.73 Total: 6.76 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -2.54 Total: -29.92 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.36 Total: -32.64 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.36 -10.09 -39.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252425870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.605 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds