Wall clock time and date at job start Tue Mar 31 2020 12:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 H 1.09001 * 109.47012 * 54.33244 * 3 2 1 5 5 C 1.52997 * 109.47366 * 294.32982 * 3 2 1 6 6 C 1.52999 * 109.47205 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46798 * 60.00042 * 6 5 3 8 8 C 1.52997 * 109.47208 * 299.99956 * 7 6 5 9 9 C 1.52999 * 109.47205 * 60.00293 * 8 7 6 10 10 H 1.08998 * 109.47040 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.47376 * 59.99624 * 9 8 7 12 12 C 1.46898 * 111.00087 * 136.32917 * 11 9 8 13 13 H 1.09010 * 109.46766 * 35.65202 * 12 11 9 14 14 C 1.52999 * 109.47502 * 275.65072 * 12 11 9 15 15 C 1.50702 * 109.47106 * 155.64587 * 12 11 9 16 16 C 1.38299 * 119.92825 * 39.73037 * 15 12 11 17 17 C 1.38102 * 120.06726 * 179.72252 * 16 15 12 18 18 C 1.38873 * 119.92887 * 0.56866 * 17 16 15 19 19 O 1.35752 * 120.06940 * 179.68000 * 18 17 16 20 20 C 1.34833 * 117.00524 * 185.80326 * 19 18 17 21 21 H 1.08005 * 119.99621 * 5.28414 * 20 19 18 22 22 C 1.38650 * 120.00655 * 185.29035 * 20 19 18 23 23 N 1.31561 * 119.99311 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00386 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46931 * 60.00031 * 24 22 20 26 26 H 1.48497 * 109.47363 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47492 * 300.00025 * 24 22 20 28 28 C 1.38882 * 119.86653 * 359.70804 * 18 17 16 29 29 C 1.38102 * 119.92371 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47121 * 59.99446 * 1 2 3 31 31 H 1.08996 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46929 * 300.00311 * 1 2 3 33 33 H 1.09000 * 109.47324 * 240.00055 * 2 1 3 34 34 H 1.09000 * 109.47121 * 120.00554 * 2 1 3 35 35 H 1.09001 * 109.47269 * 300.00104 * 5 3 2 36 36 H 1.08994 * 109.46898 * 60.00046 * 5 3 2 37 37 H 1.09000 * 109.47512 * 179.97438 * 6 5 3 38 38 H 1.09001 * 109.47367 * 300.00380 * 6 5 3 39 39 H 1.08996 * 109.47019 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.46885 * 60.00043 * 7 6 5 41 41 H 1.09001 * 109.47269 * 299.99853 * 8 7 6 42 42 H 1.09001 * 109.46662 * 180.02562 * 8 7 6 43 43 H 1.00904 * 110.99722 * 12.37834 * 11 9 8 44 44 H 1.08996 * 109.47079 * 175.06311 * 14 12 11 45 45 H 1.09000 * 109.46514 * 295.06408 * 14 12 11 46 46 H 1.08995 * 109.47010 * 55.06093 * 14 12 11 47 47 H 1.07997 * 119.96719 * 359.97438 * 16 15 12 48 48 H 1.08005 * 120.03389 * 180.27617 * 17 16 15 49 49 H 0.97001 * 119.98988 * 180.02562 * 23 22 20 50 50 H 1.07994 * 120.03748 * 179.97438 * 28 18 17 51 51 H 1.08001 * 119.96086 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5962 1.9847 0.8349 5 6 1.6498 2.1214 -1.3143 6 6 2.1593 3.5641 -1.3140 7 6 3.6827 3.5668 -1.1712 8 6 4.0729 2.8879 0.1431 9 6 3.5634 1.4452 0.1428 10 1 3.8411 0.9616 1.0794 11 7 4.1620 0.7147 -0.9823 12 6 4.6085 -0.6211 -0.5648 13 1 3.9143 -1.0218 0.1740 14 6 6.0063 -0.5228 0.0494 15 6 4.6493 -1.5343 -1.7629 16 6 5.1070 -1.0583 -2.9781 17 6 5.1510 -1.8943 -4.0764 18 6 4.7240 -3.2109 -3.9627 19 8 4.7599 -4.0333 -5.0421 20 6 4.2204 -5.2602 -4.8953 21 1 3.7103 -5.5197 -3.9793 22 6 4.3203 -6.1888 -5.9200 23 7 4.9413 -5.8725 -7.0359 24 14 3.5735 -7.8887 -5.7163 25 1 2.1115 -7.7629 -5.4875 26 1 3.8148 -8.6861 -6.9455 27 1 4.1996 -8.5685 -4.5539 28 6 4.2595 -3.6843 -2.7425 29 6 4.2242 -2.8451 -1.6462 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0936 1.5791 -2.1492 36 1 0.5646 2.1198 -1.4158 37 1 1.8817 4.0477 -2.2506 38 1 1.7152 4.1062 -0.4792 39 1 4.0458 4.5946 -1.1714 40 1 4.1269 3.0248 -2.0061 41 1 3.6288 3.4299 0.9780 42 1 5.1582 2.8903 0.2450 43 1 4.9216 1.2387 -1.3905 44 1 6.3016 -1.4973 0.4383 45 1 6.7170 -0.2056 -0.7137 46 1 5.9961 0.2045 0.8612 47 1 5.4341 -0.0330 -3.0672 48 1 5.5127 -1.5233 -5.0241 49 1 5.0108 -6.5221 -7.7530 50 1 3.9264 -4.7075 -2.6510 51 1 3.8627 -3.2126 -0.6971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252425870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:59 Heat of formation + Delta-G solvation = -47.560479 kcal Electronic energy + Delta-G solvation = -27420.818889 eV Core-core repulsion = 23897.669886 eV Total energy + Delta-G solvation = -3523.149003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97833 -40.31971 -38.51679 -36.05860 -34.75952 -34.22902 -32.15979 -31.71116 -30.00821 -29.37986 -28.39878 -27.32991 -24.81793 -23.86580 -23.61829 -22.84782 -21.59100 -21.24108 -20.00916 -19.60046 -18.79185 -17.09442 -16.53097 -16.38345 -16.21250 -15.79332 -15.55465 -15.41036 -15.22825 -14.90479 -14.73296 -14.47035 -14.20551 -14.17134 -13.98438 -13.91586 -13.51486 -13.44349 -13.31682 -13.01178 -12.82232 -12.74323 -12.48037 -12.28902 -12.26181 -12.16839 -12.16260 -11.96975 -11.73920 -11.64447 -11.46897 -11.17347 -11.14227 -10.78965 -10.75603 -10.68062 -9.70051 -9.10307 -8.79129 -8.45313 -6.12913 0.67237 0.79470 1.34399 1.45540 1.50744 2.18977 2.85243 3.18081 3.40437 3.57219 3.85751 3.91409 4.05219 4.08330 4.15206 4.24388 4.32981 4.38884 4.42388 4.45903 4.49614 4.56119 4.65838 4.70803 4.72944 4.75851 4.76997 4.88827 4.92284 4.95473 4.98597 5.04750 5.12362 5.16263 5.17446 5.20001 5.25007 5.31124 5.35627 5.36553 5.42954 5.48026 5.51015 5.59649 5.64117 5.67829 5.77224 5.80133 5.90540 6.05944 6.29313 6.40340 6.68718 6.99685 7.83026 8.78245 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002970 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.950614 B = 9425.972219 C = 9801.166657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.065 4.065 4 H 0.071 0.929 5 C -0.106 4.106 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.122 4.122 9 C 0.094 3.906 10 H 0.056 0.944 11 N -0.674 5.674 12 C 0.146 3.854 13 H 0.084 0.916 14 C -0.172 4.172 15 C -0.133 4.133 16 C -0.045 4.045 17 C -0.206 4.206 18 C 0.109 3.891 19 O -0.237 6.237 20 C -0.412 4.412 21 H 0.098 0.902 22 C -0.024 4.024 23 N -0.923 5.923 24 Si 1.017 2.983 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.257 1.257 28 C -0.241 4.241 29 C -0.070 4.070 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.343 0.657 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.069 0.931 47 H 0.140 0.860 48 H 0.107 0.893 49 H 0.272 0.728 50 H 0.114 0.886 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 17.697 19.107 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.084 4.084 4 H 0.089 0.911 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.160 4.160 9 C -0.015 4.015 10 H 0.074 0.926 11 N -0.306 5.306 12 C 0.036 3.964 13 H 0.102 0.898 14 C -0.230 4.230 15 C -0.134 4.134 16 C -0.063 4.063 17 C -0.226 4.226 18 C 0.059 3.941 19 O -0.144 6.144 20 C -0.488 4.488 21 H 0.116 0.884 22 C -0.221 4.221 23 N -0.561 5.561 24 Si 0.836 3.164 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.181 1.181 28 C -0.260 4.260 29 C -0.088 4.088 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.163 0.837 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.158 0.842 48 H 0.125 0.875 49 H 0.081 0.919 50 H 0.131 0.869 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.542 17.442 18.454 25.795 hybrid contribution 0.552 -0.966 -0.184 1.127 sum -3.990 16.476 18.271 24.924 Atomic orbital electron populations 1.21802 0.96292 1.01061 1.01668 1.21487 0.95317 0.97117 1.01203 1.21101 0.94641 0.95130 0.97562 0.91108 1.21452 0.99287 0.95558 0.98041 1.21475 0.96007 0.96423 1.01226 1.21451 0.95882 1.00192 0.97663 1.21828 1.00729 0.94918 0.98527 1.21559 0.94376 0.93391 0.92207 0.92624 1.60526 1.36530 1.02608 1.30952 1.20266 0.95340 0.88627 0.92159 0.89783 1.22459 0.97137 1.02399 1.01049 1.19626 1.04127 0.93945 0.95684 1.20633 0.96514 0.98334 0.90826 1.20450 1.09830 0.91620 1.00677 1.19921 0.95002 0.91600 0.87590 1.83943 1.71935 1.25168 1.33318 1.21736 1.34861 0.87924 1.04281 0.88431 1.26569 0.97486 1.03941 0.94111 1.70187 1.42533 1.37326 1.06084 0.84674 0.78784 0.74365 0.78559 1.18264 1.19564 1.18124 1.21183 1.10090 1.01269 0.93500 1.20880 0.97474 0.93326 0.97140 0.93122 0.93683 0.92139 0.92925 0.92722 0.92602 0.93193 0.92773 0.91911 0.91737 0.92218 0.90685 0.91425 0.83666 0.92563 0.92618 0.91174 0.84200 0.87479 0.91913 0.86860 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.68 71.98 0.70 -2.15 16 2 C -0.11 -2.27 4.14 30.59 0.13 -2.14 16 3 C -0.07 -1.10 2.00 -10.79 -0.02 -1.12 16 4 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.11 -1.98 4.81 30.59 0.15 -1.83 16 6 C -0.11 -1.75 5.92 30.60 0.18 -1.56 16 7 C -0.11 -1.59 5.74 30.60 0.18 -1.41 16 8 C -0.12 -1.50 5.26 30.59 0.16 -1.34 16 9 C 0.09 1.44 2.19 44.92 0.10 1.54 16 10 H 0.06 0.83 7.15 -2.39 -0.02 0.81 16 11 N -0.67 -12.63 3.96 -473.30 -1.87 -14.51 16 12 C 0.15 3.13 1.88 44.17 0.08 3.21 16 13 H 0.08 1.78 6.24 -2.38 -0.01 1.76 16 14 C -0.17 -3.17 9.14 71.98 0.66 -2.51 16 15 C -0.13 -4.05 4.96 -19.84 -0.10 -4.15 16 16 C -0.04 -1.51 9.32 22.25 0.21 -1.31 16 17 C -0.21 -9.05 9.99 22.39 0.22 -8.82 16 18 C 0.11 5.57 6.65 22.58 0.15 5.72 16 19 O -0.24 -14.69 9.76 -22.78 -0.22 -14.91 16 20 C -0.41 -24.67 9.44 67.92 0.64 -24.03 16 21 H 0.10 5.39 5.29 -2.91 -0.02 5.37 16 22 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 23 N -0.92 -57.91 13.67 21.61 0.30 -57.61 16 24 Si 1.02 43.84 29.55 68.60 2.03 45.87 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 28 C -0.24 -10.80 9.13 22.39 0.20 -10.60 16 29 C -0.07 -2.44 9.66 22.25 0.21 -2.22 16 30 H 0.05 0.99 6.59 -2.39 -0.02 0.98 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.36 7.34 -2.39 -0.02 1.34 16 34 H 0.05 1.03 7.72 -2.39 -0.02 1.01 16 35 H 0.06 1.33 7.60 -2.39 -0.02 1.31 16 36 H 0.05 0.95 6.59 -2.39 -0.02 0.93 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.96 6.98 -2.39 -0.02 0.95 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.34 5.99 6.26 -89.69 -0.56 5.43 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.02 7.68 -2.39 -0.02 1.00 16 47 H 0.14 3.80 7.21 -2.91 -0.02 3.78 16 48 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 49 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 50 H 0.11 5.21 5.71 -2.91 -0.02 5.19 16 51 H 0.13 3.82 8.03 -2.91 -0.02 3.80 16 Total: -1.00 -69.45 387.86 4.88 -64.57 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.34 Total: 32.24 kcal Atomic # 6 Polarization: -59.97 SS G_CDS: 4.32 Total: -55.65 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.58 Total: -72.12 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.22 Total: -14.91 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.45 4.88 -64.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252425870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.011 kcal (2) G-P(sol) polarization free energy of solvation -69.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds