Wall clock time and date at job start Tue Mar 31 2020 11:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46982 * 2 1 4 4 C 1.52999 * 109.47006 * 119.99724 * 2 1 3 5 5 C 1.50699 * 109.47624 * 300.00048 * 4 2 1 6 6 H 1.08003 * 119.99462 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00095 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00254 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47597 * 270.00292 * 9 7 5 11 11 H 1.48506 * 109.46903 * 30.00670 * 9 7 5 12 12 H 1.48496 * 109.47181 * 149.99781 * 9 7 5 13 13 C 1.52995 * 109.47074 * 240.00005 * 2 1 3 14 14 N 1.46903 * 109.47072 * 60.00257 * 13 2 1 15 15 C 1.46901 * 110.99937 * 180.02562 * 14 13 2 16 16 C 1.52994 * 109.47338 * 174.61347 * 15 14 13 17 17 C 1.53000 * 115.55182 * 294.53509 * 16 15 14 18 18 O 1.42897 * 109.47125 * 294.88014 * 17 16 15 19 19 C 1.53001 * 117.49870 * 148.86176 * 16 15 14 20 20 C 1.53005 * 117.49716 * 80.20151 * 16 15 14 21 21 H 1.08999 * 117.49981 * 214.97904 * 20 16 15 22 22 C 1.50704 * 117.49771 * 0.02562 * 20 16 15 23 23 C 1.38236 * 119.99839 * 59.72697 * 22 20 16 24 24 C 1.38235 * 119.99810 * 179.76185 * 23 22 20 25 25 C 1.38232 * 119.99688 * 0.48865 * 24 23 22 26 26 C 1.38232 * 120.00177 * 359.78526 * 25 24 23 27 27 C 1.38228 * 120.00206 * 359.96039 * 26 25 24 28 28 H 1.09002 * 109.47151 * 299.99735 * 1 2 3 29 29 H 1.08999 * 109.46820 * 60.00086 * 1 2 3 30 30 H 1.09005 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46920 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47422 * 300.00160 * 3 2 1 33 33 H 1.09002 * 109.46961 * 60.00149 * 3 2 1 34 34 H 1.09004 * 109.47090 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47134 * 60.00512 * 4 2 1 36 36 H 0.97001 * 120.00470 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47030 * 180.02562 * 13 2 1 38 38 H 1.08999 * 109.47657 * 299.99945 * 13 2 1 39 39 H 1.00894 * 111.00059 * 56.04733 * 14 13 2 40 40 H 1.09006 * 109.46928 * 294.61818 * 15 14 13 41 41 H 1.09005 * 109.47034 * 54.61302 * 15 14 13 42 42 H 1.09008 * 109.47042 * 54.87720 * 17 16 15 43 43 H 1.09004 * 109.47156 * 174.87673 * 17 16 15 44 44 H 0.96697 * 113.99878 * 179.97438 * 18 17 16 45 45 H 1.08992 * 117.50175 * 0.02562 * 19 16 15 46 46 H 1.09003 * 117.49778 * 145.00283 * 19 16 15 47 47 H 1.08003 * 119.99824 * 359.97438 * 23 22 20 48 48 H 1.07994 * 119.99984 * 180.25191 * 24 23 22 49 49 H 1.08005 * 119.99782 * 179.76334 * 25 24 23 50 50 H 1.08003 * 120.00021 * 179.97438 * 26 25 24 51 51 H 1.08005 * 120.00260 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4798 6 1 0.9165 0.8671 2.3806 7 6 1.8713 -0.4816 3.7320 8 7 1.4325 0.1381 4.8058 9 14 2.9452 -2.0003 3.9034 10 1 2.0867 -3.2111 3.9494 11 1 3.8653 -2.0897 2.7412 12 1 3.7376 -1.9075 5.1558 13 6 2.0400 -0.7212 -1.2492 14 7 1.5504 -0.0287 -2.4486 15 6 2.0209 -0.6951 -3.6703 16 6 1.3844 -0.0294 -4.8919 17 6 -0.1337 -0.1797 -5.0094 18 8 -0.4623 -1.5565 -5.2053 19 6 2.1950 -0.0118 -6.1894 20 6 2.0053 1.2782 -5.3875 21 1 1.3323 2.0312 -5.7976 22 6 3.1973 1.8115 -4.6353 23 6 4.3472 1.0510 -4.5337 24 6 5.4424 1.5422 -3.8479 25 6 5.3840 2.7896 -3.2552 26 6 4.2321 3.5477 -3.3520 27 6 3.1389 3.0587 -4.0422 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7216 1.2491 35 1 1.6767 -1.7489 1.2493 36 1 1.6668 -0.1933 5.6868 37 1 3.1300 -0.7216 -1.2490 38 1 1.6767 -1.7489 -1.2493 39 1 1.8199 0.9436 -2.4401 40 1 3.1058 -0.6116 -3.7349 41 1 1.7386 -1.7476 -3.6417 42 1 -0.6062 0.1801 -4.0953 43 1 -0.4920 0.4037 -5.8575 44 1 -1.4106 -1.7265 -5.2879 45 1 3.1816 -0.4749 -6.1729 46 1 1.6468 -0.1073 -7.1267 47 1 4.3912 0.0745 -4.9931 48 1 6.3421 0.9498 -3.7720 49 1 6.2383 3.1718 -2.7161 50 1 4.1864 4.5221 -2.8885 51 1 2.2390 3.6512 -4.1182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289901031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:45 Heat of formation + Delta-G solvation = -11.309396 kcal Electronic energy + Delta-G solvation = -27722.915027 eV Core-core repulsion = 24201.337989 eV Total energy + Delta-G solvation = -3521.577038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.33919 -38.20204 -37.37134 -35.95323 -33.75986 -32.02883 -31.09300 -30.82409 -27.93439 -27.09910 -26.31840 -26.04258 -24.36822 -23.66060 -22.51266 -21.66788 -20.73700 -19.23782 -17.80537 -17.38657 -17.01242 -16.70134 -15.86829 -15.49125 -15.12628 -14.83844 -14.61930 -14.30991 -14.06603 -13.74766 -13.62942 -13.46848 -13.21665 -12.98839 -12.70328 -12.57566 -12.26773 -12.14833 -12.01028 -11.83008 -11.46464 -11.10704 -11.08947 -10.93228 -10.85007 -10.76006 -10.58163 -10.44428 -10.35417 -10.27649 -9.86167 -9.72384 -9.63820 -9.20606 -9.00356 -8.84686 -8.62559 -8.46161 -7.98195 -5.96686 -3.92325 1.20816 1.31237 3.32475 3.34854 3.42179 3.46343 3.84781 4.05867 4.38599 4.51602 4.57669 4.72492 4.74302 4.84083 4.89797 5.00082 5.04183 5.16237 5.30184 5.36752 5.37496 5.48287 5.55944 5.63322 5.65388 5.78621 5.79829 5.81749 5.92049 5.93798 5.94877 5.98600 6.09177 6.24499 6.33955 6.38816 6.44775 6.50246 6.50324 6.65718 6.76464 6.85329 6.89985 7.13550 7.19598 7.25422 7.38594 7.41537 7.53050 7.57233 7.77699 7.89769 8.63878 9.09441 9.66881 11.16500 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003890 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.368572 B = 7196.732470 C = 8413.169988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.127 4.127 4 C -0.004 4.004 5 C -0.505 4.505 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.907 5.907 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.290 1.290 13 C 0.070 3.930 14 N -0.679 5.679 15 C 0.091 3.909 16 C -0.096 4.096 17 C 0.120 3.880 18 O -0.568 6.568 19 C -0.161 4.161 20 C -0.105 4.105 21 H 0.113 0.887 22 C -0.050 4.050 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.112 4.112 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.011 0.989 35 H 0.009 0.991 36 H 0.261 0.739 37 H 0.019 0.981 38 H 0.064 0.936 39 H 0.339 0.661 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.377 0.623 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 3.416 -24.185 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.184 4.184 4 C -0.042 4.042 5 C -0.543 4.543 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.216 1.216 13 C -0.059 4.059 14 N -0.311 5.311 15 C -0.038 4.038 16 C -0.096 4.096 17 C 0.042 3.958 18 O -0.373 6.373 19 C -0.198 4.198 20 C -0.124 4.124 21 H 0.130 0.870 22 C -0.050 4.050 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.130 4.130 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.159 0.841 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.223 0.777 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.530 3.020 -23.946 24.268 hybrid contribution 0.991 -0.513 0.291 1.153 sum 3.521 2.508 -23.655 24.046 Atomic orbital electron populations 1.21598 0.94644 1.00569 1.00517 1.20391 0.96080 0.95002 0.93259 1.21741 0.99513 0.96474 1.00701 1.19625 0.95754 0.95438 0.93381 1.21142 1.31263 1.13176 0.88692 0.90450 1.25003 0.95816 0.96702 0.96029 1.69909 1.46255 1.40680 0.97792 0.86860 0.81338 0.84135 0.77411 1.20443 1.19210 1.21610 1.22086 0.96105 0.98037 0.89664 1.60441 1.63451 1.06445 1.00727 1.21467 0.96027 0.98476 0.87864 1.21438 0.93776 0.98971 0.95454 1.21494 0.92409 0.82405 0.99472 1.86457 1.28987 1.25815 1.96077 1.23186 1.01723 0.99614 0.95319 1.21180 0.97861 0.91075 1.02245 0.86950 1.19029 0.93576 0.94402 0.97954 1.21048 0.93067 0.99602 1.00011 1.21113 0.98399 0.96086 0.97983 1.21159 0.98317 0.94868 0.99613 1.21139 0.93279 1.00016 0.98763 1.20953 0.98604 0.95487 0.97915 0.92262 0.93789 0.94283 0.94297 0.94711 0.91342 0.97044 0.97223 0.92947 0.96238 0.91756 0.84148 0.94794 0.90429 0.91670 0.94475 0.77650 0.88431 0.88278 0.86113 0.86263 0.86187 0.85968 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 2 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 3 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.50 -14.13 8.20 -34.44 -0.28 -14.41 16 6 H 0.08 2.31 5.92 -52.48 -0.31 2.00 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.03 13.96 55.43 0.77 -27.25 16 9 Si 0.87 22.12 27.47 -169.99 -4.67 17.45 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 C 0.07 1.21 4.64 -3.83 -0.02 1.19 16 14 N -0.68 -9.95 5.54 -113.78 -0.63 -10.58 16 15 C 0.09 1.18 4.88 -3.83 -0.02 1.17 16 16 C -0.10 -1.04 1.98 -154.51 -0.31 -1.34 16 17 C 0.12 1.23 6.81 37.16 0.25 1.49 16 18 O -0.57 -6.16 13.56 -35.23 -0.48 -6.63 16 19 C -0.16 -1.50 9.28 -26.69 -0.25 -1.74 16 20 C -0.11 -1.02 5.73 -91.73 -0.53 -1.54 16 21 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.05 -0.53 4.37 -104.62 -0.46 -0.99 16 23 C -0.12 -1.29 7.35 -39.58 -0.29 -1.58 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.12 -1.30 10.05 -39.59 -0.40 -1.69 16 26 C -0.11 -1.20 10.05 -39.59 -0.40 -1.60 16 27 C -0.11 -1.17 9.74 -39.59 -0.39 -1.56 16 28 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.58 6.57 -51.93 -0.34 0.23 16 33 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 34 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 35 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.34 5.00 6.12 -39.29 -0.24 4.76 16 40 H 0.03 0.44 4.93 -51.93 -0.26 0.18 16 41 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 42 H 0.07 0.74 8.06 -51.92 -0.42 0.32 16 43 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 44 H 0.38 2.46 9.12 45.56 0.42 2.88 16 45 H 0.10 0.88 6.19 -51.93 -0.32 0.56 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.12 1.20 5.31 -52.48 -0.28 0.92 16 48 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 49 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 50 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 51 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -31.64 392.95 -10.07 -41.72 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.84 Total: 7.17 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -3.16 Total: -27.79 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.14 Total: -37.84 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.48 Total: -6.63 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.64 -10.07 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289901031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.410 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds