Wall clock time and date at job start Tue Mar 31 2020 11:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46982 * 2 1 4 4 C 1.52999 * 109.47006 * 119.99724 * 2 1 3 5 5 C 1.50699 * 109.47624 * 300.00048 * 4 2 1 6 6 H 1.08003 * 119.99462 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00095 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00254 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47597 * 270.00292 * 9 7 5 11 11 H 1.48506 * 109.46903 * 30.00670 * 9 7 5 12 12 H 1.48496 * 109.47181 * 149.99781 * 9 7 5 13 13 C 1.52995 * 109.47074 * 240.00005 * 2 1 3 14 14 N 1.46903 * 109.47072 * 60.00257 * 13 2 1 15 15 C 1.46901 * 110.99937 * 180.02562 * 14 13 2 16 16 C 1.52994 * 109.47338 * 174.61347 * 15 14 13 17 17 C 1.53000 * 115.55182 * 294.53509 * 16 15 14 18 18 O 1.42897 * 109.47125 * 294.88014 * 17 16 15 19 19 C 1.53001 * 117.49870 * 148.86176 * 16 15 14 20 20 C 1.53005 * 117.49716 * 80.20151 * 16 15 14 21 21 H 1.08999 * 117.49981 * 214.97904 * 20 16 15 22 22 C 1.50704 * 117.49771 * 0.02562 * 20 16 15 23 23 C 1.38236 * 119.99839 * 59.72697 * 22 20 16 24 24 C 1.38235 * 119.99810 * 179.76185 * 23 22 20 25 25 C 1.38232 * 119.99688 * 0.48865 * 24 23 22 26 26 C 1.38232 * 120.00177 * 359.78526 * 25 24 23 27 27 C 1.38228 * 120.00206 * 359.96039 * 26 25 24 28 28 H 1.09002 * 109.47151 * 299.99735 * 1 2 3 29 29 H 1.08999 * 109.46820 * 60.00086 * 1 2 3 30 30 H 1.09005 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46920 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47422 * 300.00160 * 3 2 1 33 33 H 1.09002 * 109.46961 * 60.00149 * 3 2 1 34 34 H 1.09004 * 109.47090 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47134 * 60.00512 * 4 2 1 36 36 H 0.97001 * 120.00470 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47030 * 180.02562 * 13 2 1 38 38 H 1.08999 * 109.47657 * 299.99945 * 13 2 1 39 39 H 1.00894 * 111.00059 * 56.04733 * 14 13 2 40 40 H 1.09006 * 109.46928 * 294.61818 * 15 14 13 41 41 H 1.09005 * 109.47034 * 54.61302 * 15 14 13 42 42 H 1.09008 * 109.47042 * 54.87720 * 17 16 15 43 43 H 1.09004 * 109.47156 * 174.87673 * 17 16 15 44 44 H 0.96697 * 113.99878 * 179.97438 * 18 17 16 45 45 H 1.08992 * 117.50175 * 0.02562 * 19 16 15 46 46 H 1.09003 * 117.49778 * 145.00283 * 19 16 15 47 47 H 1.08003 * 119.99824 * 359.97438 * 23 22 20 48 48 H 1.07994 * 119.99984 * 180.25191 * 24 23 22 49 49 H 1.08005 * 119.99782 * 179.76334 * 25 24 23 50 50 H 1.08003 * 120.00021 * 179.97438 * 26 25 24 51 51 H 1.08005 * 120.00260 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4798 6 1 0.9165 0.8671 2.3806 7 6 1.8713 -0.4816 3.7320 8 7 1.4325 0.1381 4.8058 9 14 2.9452 -2.0003 3.9034 10 1 2.0867 -3.2111 3.9494 11 1 3.8653 -2.0897 2.7412 12 1 3.7376 -1.9075 5.1558 13 6 2.0400 -0.7212 -1.2492 14 7 1.5504 -0.0287 -2.4486 15 6 2.0209 -0.6951 -3.6703 16 6 1.3844 -0.0294 -4.8919 17 6 -0.1337 -0.1797 -5.0094 18 8 -0.4623 -1.5565 -5.2053 19 6 2.1950 -0.0118 -6.1894 20 6 2.0053 1.2782 -5.3875 21 1 1.3323 2.0312 -5.7976 22 6 3.1973 1.8115 -4.6353 23 6 4.3472 1.0510 -4.5337 24 6 5.4424 1.5422 -3.8479 25 6 5.3840 2.7896 -3.2552 26 6 4.2321 3.5477 -3.3520 27 6 3.1389 3.0587 -4.0422 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7216 1.2491 35 1 1.6767 -1.7489 1.2493 36 1 1.6668 -0.1933 5.6868 37 1 3.1300 -0.7216 -1.2490 38 1 1.6767 -1.7489 -1.2493 39 1 1.8199 0.9436 -2.4401 40 1 3.1058 -0.6116 -3.7349 41 1 1.7386 -1.7476 -3.6417 42 1 -0.6062 0.1801 -4.0953 43 1 -0.4920 0.4037 -5.8575 44 1 -1.4106 -1.7265 -5.2879 45 1 3.1816 -0.4749 -6.1729 46 1 1.6468 -0.1073 -7.1267 47 1 4.3912 0.0745 -4.9931 48 1 6.3421 0.9498 -3.7720 49 1 6.2383 3.1718 -2.7161 50 1 4.1864 4.5221 -2.8885 51 1 2.2390 3.6512 -4.1182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289901031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:43 Heat of formation + Delta-G solvation = -30.665671 kcal Electronic energy + Delta-G solvation = -27723.754378 eV Core-core repulsion = 24201.337989 eV Total energy + Delta-G solvation = -3522.416389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.14146 -39.23550 -38.66850 -36.74101 -35.29013 -33.98505 -31.87372 -31.60576 -29.79722 -28.20688 -27.93047 -27.10983 -25.64812 -24.67590 -23.42010 -23.26366 -21.48458 -20.16814 -19.31402 -18.87439 -18.16978 -17.84882 -16.75786 -16.39369 -16.35439 -16.11034 -15.77882 -15.60371 -15.29800 -15.11389 -14.66490 -14.50488 -14.47077 -14.21584 -14.05282 -13.91683 -13.62836 -13.37019 -13.09695 -12.90627 -12.79376 -12.77620 -12.45690 -12.29490 -12.24356 -12.08750 -11.84374 -11.75012 -11.66863 -11.39638 -11.32997 -11.12675 -11.00100 -10.83620 -10.70274 -10.53617 -9.80238 -9.41437 -9.17065 -8.22037 -6.21921 0.42308 0.52717 1.34556 1.35880 1.46974 2.38758 2.55484 3.03043 3.12901 3.32636 3.43631 3.80519 3.90043 3.97100 4.01180 4.11045 4.15745 4.16337 4.21287 4.31156 4.32126 4.40529 4.58547 4.62738 4.66599 4.73549 4.77125 4.80468 4.87904 4.93358 4.96066 5.02459 5.04459 5.09494 5.11366 5.15219 5.17611 5.20123 5.23925 5.35212 5.43688 5.52327 5.61065 5.61427 5.67238 5.72806 5.75452 5.81041 6.13955 6.15425 6.41855 6.56853 6.84740 7.00762 7.40461 8.94116 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003890 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.368572 B = 7196.732470 C = 8413.169988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.046 4.046 3 C -0.117 4.117 4 C -0.002 4.002 5 C -0.502 4.502 6 H 0.046 0.954 7 C 0.004 3.996 8 N -0.953 5.953 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.253 1.253 12 H -0.287 1.287 13 C 0.082 3.918 14 N -0.673 5.673 15 C 0.095 3.905 16 C -0.109 4.109 17 C 0.122 3.878 18 O -0.588 6.588 19 C -0.151 4.151 20 C -0.098 4.098 21 H 0.128 0.872 22 C -0.057 4.057 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.125 4.125 27 C -0.120 4.120 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.017 0.983 38 H 0.061 0.939 39 H 0.340 0.660 40 H 0.036 0.964 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.393 0.607 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.127 0.873 48 H 0.130 0.870 49 H 0.131 0.869 50 H 0.135 0.865 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 2.874 -26.618 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.046 4.046 3 C -0.174 4.174 4 C -0.040 4.040 5 C -0.540 4.540 6 H 0.064 0.936 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.177 1.177 12 H -0.213 1.213 13 C -0.047 4.047 14 N -0.305 5.305 15 C -0.034 4.034 16 C -0.109 4.109 17 C 0.044 3.956 18 O -0.395 6.395 19 C -0.189 4.189 20 C -0.117 4.117 21 H 0.146 0.854 22 C -0.057 4.057 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.143 4.143 27 C -0.138 4.138 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.160 0.840 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.243 0.757 45 H 0.117 0.883 46 H 0.131 0.869 47 H 0.144 0.856 48 H 0.148 0.852 49 H 0.149 0.851 50 H 0.152 0.848 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.008 2.476 -26.408 26.693 hybrid contribution 0.798 -0.281 1.019 1.324 sum 3.805 2.195 -25.388 25.766 Atomic orbital electron populations 1.21486 0.94464 1.00287 1.00100 1.20316 0.96147 0.95265 0.92862 1.21614 0.99351 0.95920 1.00518 1.19585 0.95412 0.95342 0.93650 1.21400 1.30063 1.12185 0.90365 0.93580 1.25865 0.97507 1.00030 0.95768 1.70053 1.48240 1.42767 0.98410 0.85844 0.79784 0.80273 0.77846 1.19594 1.17683 1.21266 1.21813 0.95764 0.97619 0.89494 1.60388 1.63301 1.06349 1.00449 1.21414 0.96323 0.97707 0.87954 1.21374 0.94288 1.00056 0.95228 1.21483 0.91895 0.82444 0.99764 1.86412 1.30809 1.26241 1.96084 1.23257 1.01559 0.98991 0.95065 1.21232 0.97466 0.91165 1.01789 0.85405 1.19189 0.93892 0.94511 0.98072 1.21207 0.93306 0.99994 1.00221 1.21348 0.98990 0.96409 0.98076 1.21404 0.98933 0.95069 0.99866 1.21394 0.93342 1.00661 0.98868 1.21191 0.99150 0.95716 0.97781 0.95194 0.91539 0.94470 0.94334 0.92009 0.94323 0.97268 0.97238 0.92873 0.96490 0.92071 0.83990 0.94596 0.91948 0.93042 0.92248 0.75737 0.88333 0.86900 0.85572 0.85228 0.85147 0.84756 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 8.06 71.98 0.58 -3.54 16 2 C -0.05 -1.78 0.60 -52.18 -0.03 -1.81 16 3 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 4 C 0.00 -0.10 3.11 29.85 0.09 0.00 16 5 C -0.50 -28.66 8.20 25.60 0.21 -28.45 16 6 H 0.05 2.87 5.92 -2.91 -0.02 2.85 16 7 C 0.00 0.25 5.47 84.65 0.46 0.71 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 9 Si 0.94 45.55 27.47 68.60 1.88 47.43 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.25 -11.60 6.54 99.48 0.65 -10.94 16 12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 13 C 0.08 2.73 4.64 86.30 0.40 3.13 16 14 N -0.67 -18.45 5.54 -513.89 -2.84 -21.29 16 15 C 0.09 2.30 4.88 86.30 0.42 2.72 16 16 C -0.11 -2.08 1.98 -52.18 -0.10 -2.19 16 17 C 0.12 2.20 6.81 71.98 0.49 2.69 16 18 O -0.59 -11.47 13.56 -148.98 -2.02 -13.49 16 19 C -0.15 -2.38 9.28 30.62 0.28 -2.10 16 20 C -0.10 -1.62 5.73 -11.51 -0.07 -1.68 16 21 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 22 C -0.06 -1.08 4.37 -19.87 -0.09 -1.17 16 23 C -0.13 -2.58 7.35 22.27 0.16 -2.41 16 24 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 25 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 26 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 27 C -0.12 -2.29 9.74 22.27 0.22 -2.07 16 28 H 0.03 1.31 6.62 -2.39 -0.02 1.29 16 29 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.96 6.57 -2.39 -0.02 1.94 16 33 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 34 H 0.01 0.44 7.20 -2.38 -0.02 0.42 16 35 H 0.01 0.45 7.57 -2.38 -0.02 0.43 16 36 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.34 9.27 6.12 -89.70 -0.55 8.72 16 40 H 0.04 0.86 4.93 -2.38 -0.01 0.85 16 41 H 0.06 1.71 8.09 -2.38 -0.02 1.69 16 42 H 0.05 1.06 8.06 -2.38 -0.02 1.04 16 43 H 0.06 0.81 8.09 -2.39 -0.02 0.79 16 44 H 0.39 4.34 9.12 -74.06 -0.68 3.66 16 45 H 0.10 1.53 6.19 -2.39 -0.01 1.52 16 46 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.13 2.29 5.31 -2.91 -0.02 2.27 16 48 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 49 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 50 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 51 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -68.24 392.95 1.23 -67.01 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.36 Total: 27.45 kcal Atomic # 6 Polarization: -51.34 SS G_CDS: 4.27 Total: -47.07 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -2.55 Total: -81.33 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -2.02 Total: -13.49 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -68.24 1.23 -67.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289901031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.341 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds