Wall clock time and date at job start Tue Mar 31 2020 11:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 C 1.53005 * 109.47212 * 240.00426 * 2 1 3 5 5 C 1.50705 * 109.47058 * 59.99581 * 4 2 1 6 6 H 1.08001 * 119.99698 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99724 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00335 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99548 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47360 * 60.00068 * 9 7 5 11 11 H 1.48505 * 109.47052 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47179 * 299.99620 * 9 7 5 13 13 C 1.52995 * 109.47364 * 120.00570 * 2 1 3 14 14 N 1.46900 * 109.47519 * 68.14522 * 13 2 1 15 15 C 1.48537 * 110.99840 * 271.83792 * 14 13 2 16 16 C 1.54929 * 103.22821 * 200.27565 * 15 14 13 17 17 C 1.54603 * 102.91892 * 37.41482 * 16 15 14 18 18 C 1.53001 * 110.30898 * 97.05869 * 17 16 15 19 19 O 1.42901 * 109.46956 * 62.78933 * 18 17 16 20 20 C 1.50700 * 110.30562 * 219.12432 * 17 16 15 21 21 C 1.38233 * 120.00136 * 46.46649 * 20 17 16 22 22 C 1.38236 * 119.99994 * 179.76116 * 21 20 17 23 23 C 1.38231 * 119.99925 * 0.50815 * 22 21 20 24 24 C 1.38231 * 120.00083 * 359.74595 * 23 22 21 25 25 C 1.38229 * 119.99937 * 0.02562 * 24 23 22 26 26 C 1.48117 * 110.95447 * 154.46843 * 14 13 2 27 27 H 1.09002 * 109.47029 * 280.76121 * 1 2 3 28 28 H 1.09005 * 109.47484 * 40.75761 * 1 2 3 29 29 H 1.09001 * 109.47421 * 160.75761 * 1 2 3 30 30 H 1.09004 * 109.47591 * 186.58911 * 3 2 1 31 31 H 1.09005 * 109.47510 * 306.59232 * 3 2 1 32 32 H 1.09008 * 109.47284 * 66.59062 * 3 2 1 33 33 H 1.08997 * 109.47426 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46831 * 300.00093 * 4 2 1 35 35 H 0.97000 * 120.00018 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.46955 * 308.14098 * 13 2 1 37 37 H 1.09001 * 109.47532 * 188.14639 * 13 2 1 38 38 H 1.09002 * 110.66296 * 81.83895 * 15 14 13 39 39 H 1.09003 * 110.80890 * 318.78054 * 15 14 13 40 40 H 1.08995 * 110.72590 * 279.05980 * 16 15 14 41 41 H 1.08996 * 110.72519 * 155.77016 * 16 15 14 42 42 H 1.08993 * 109.47203 * 182.78865 * 18 17 16 43 43 H 1.08998 * 109.47126 * 302.78951 * 18 17 16 44 44 H 0.96705 * 113.99691 * 180.02562 * 19 18 17 45 45 H 1.08001 * 119.99878 * 359.97438 * 21 20 17 46 46 H 1.08005 * 119.99850 * 180.22912 * 22 21 20 47 47 H 1.08007 * 119.99980 * 179.72016 * 23 22 21 48 48 H 1.07997 * 120.00195 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.00033 * 179.97438 * 25 24 23 50 50 H 1.09003 * 109.99510 * 26.56448 * 26 14 13 51 51 H 1.08997 * 109.95086 * 265.20372 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4798 6 1 0.9169 0.8676 -2.3805 7 6 1.8702 -0.4820 -3.7321 8 7 2.6255 -1.5518 -3.8528 9 14 1.2480 0.3991 -5.2572 10 1 1.7440 1.7988 -5.2572 11 1 1.7419 -0.3017 -6.4698 12 1 -0.2370 0.4000 -5.2571 13 6 2.0399 -0.7213 1.2491 14 7 1.7172 -2.1513 1.1550 15 6 0.3682 -2.4302 1.7108 16 6 0.4170 -3.9486 2.0150 17 6 1.8636 -4.1534 2.5207 18 6 1.8980 -4.1424 4.0503 19 8 1.1269 -5.2359 4.5519 20 6 2.4226 -5.4505 1.9952 21 6 2.2728 -5.7773 0.6604 22 6 2.7899 -6.9648 0.1773 23 6 3.4475 -7.8303 1.0312 24 6 3.5927 -7.5060 2.3671 25 6 3.0798 -6.3163 2.8491 26 6 2.6608 -2.9614 1.9595 27 1 -0.3633 0.1919 1.0096 28 1 -0.3634 0.7784 -0.6709 29 1 -0.3634 -0.9702 -0.3387 30 1 3.1236 1.4448 -0.1179 31 1 1.5835 1.9893 -0.8251 32 1 1.7761 1.9212 0.9431 33 1 3.1299 -0.7216 -1.2491 34 1 1.6766 -1.7488 -1.2494 35 1 2.8598 -1.8831 -4.7339 36 1 1.5627 -0.2985 2.1332 37 1 3.1202 -0.5970 1.3250 38 1 -0.4044 -2.2101 0.9740 39 1 0.2004 -1.8600 2.6244 40 1 0.2391 -4.5292 1.1099 41 1 -0.3032 -4.2100 2.7901 42 1 2.9288 -4.2380 4.3912 43 1 1.4797 -3.2047 4.4163 44 1 1.1039 -5.2909 5.5171 45 1 1.7548 -5.1032 -0.0058 46 1 2.6761 -7.2184 -0.8663 47 1 3.8476 -8.7603 0.6547 48 1 4.1062 -8.1824 3.0343 49 1 3.1929 -6.0631 3.8929 50 1 3.0608 -2.3636 2.7785 51 1 3.4730 -3.3221 1.3284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291334928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:40 Heat of formation + Delta-G solvation = -26.398644 kcal Electronic energy + Delta-G solvation = -28047.528399 eV Core-core repulsion = 24525.297043 eV Total energy + Delta-G solvation = -3522.231357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38033 -38.31995 -37.05229 -35.79097 -32.82399 -31.94975 -30.77738 -29.83189 -28.71359 -27.03004 -26.40550 -25.86391 -24.48200 -22.71770 -22.38969 -21.91567 -20.89246 -19.21654 -17.83291 -17.40194 -17.20361 -16.10713 -15.45670 -15.33475 -15.00041 -14.59968 -14.47092 -14.19245 -13.89638 -13.56367 -13.32398 -13.02330 -12.92736 -12.81727 -12.60923 -12.15443 -12.03833 -11.95704 -11.74347 -11.62811 -11.32081 -11.24164 -11.04276 -10.87814 -10.76763 -10.66820 -10.66372 -10.33652 -10.23491 -10.17352 -10.07384 -10.04492 -9.55454 -8.89023 -8.69961 -8.69086 -8.45707 -8.18578 -7.82759 -5.82031 -3.81435 1.54379 1.62126 3.40787 3.45638 3.47608 3.89625 4.02942 4.39167 4.57412 4.59239 4.76894 4.96349 5.13539 5.14083 5.19458 5.21938 5.29139 5.38188 5.46486 5.53057 5.60480 5.65326 5.66981 5.77446 5.83737 5.89316 6.01023 6.08753 6.10112 6.13114 6.25771 6.27821 6.28525 6.31520 6.36736 6.42496 6.55046 6.66021 6.74115 6.78899 6.82968 6.85779 7.10177 7.20440 7.26598 7.30128 7.42298 7.45596 7.62612 7.92556 8.14296 8.31778 8.65345 9.26287 9.79972 11.28906 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.003941 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.327655 B = 7103.443289 C = 8509.715054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.057 4.057 3 C -0.126 4.126 4 C 0.048 3.952 5 C -0.509 4.509 6 H 0.052 0.948 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.060 3.940 14 N -0.491 5.491 15 C 0.031 3.969 16 C -0.108 4.108 17 C -0.027 4.027 18 C 0.088 3.912 19 O -0.562 6.562 20 C -0.057 4.057 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.107 4.107 26 C 0.051 3.949 27 H 0.022 0.978 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.006 0.994 34 H 0.036 0.964 35 H 0.257 0.743 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.374 0.626 45 H 0.132 0.868 46 H 0.121 0.879 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.118 0.882 50 H 0.040 0.960 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 -8.167 17.937 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.057 4.057 3 C -0.183 4.183 4 C 0.011 3.989 5 C -0.548 4.548 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.709 3.291 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.205 1.205 13 C -0.067 4.067 14 N -0.215 5.215 15 C -0.096 4.096 16 C -0.146 4.146 17 C -0.028 4.028 18 C 0.011 3.989 19 O -0.367 6.367 20 C -0.058 4.058 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.125 4.125 26 C -0.077 4.077 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.024 0.976 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.220 0.780 45 H 0.150 0.850 46 H 0.139 0.861 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.136 0.864 50 H 0.059 0.941 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.567 -8.507 16.604 18.665 hybrid contribution -0.104 0.869 0.494 1.005 sum -0.671 -7.639 17.098 18.739 Atomic orbital electron populations 1.21821 0.95983 1.01903 0.98058 1.20590 0.94807 0.94182 0.96134 1.21750 1.00623 0.96565 0.99404 1.19011 0.95287 0.96081 0.88512 1.21329 1.30587 1.11662 0.91192 0.92983 1.24965 0.95584 0.95112 0.98694 1.69967 1.37393 1.23100 1.22981 0.86849 0.79136 0.79819 0.83256 1.20565 1.21550 1.20509 1.22484 0.99752 0.87166 0.97347 1.64863 1.00877 1.06645 1.49077 1.23496 0.93412 0.94754 0.97970 1.22664 0.94128 0.96330 1.01469 1.20392 0.96762 0.93066 0.92583 1.22200 0.94317 0.88833 0.93587 1.86588 1.73979 1.50464 1.25622 1.19533 0.97747 0.94888 0.93591 1.21206 0.98995 0.96672 0.95163 1.21162 0.98339 0.94581 0.99710 1.21090 1.00074 0.99569 0.93900 1.21032 1.00916 0.97199 0.95626 1.21013 0.98068 0.94223 0.99224 1.22998 0.96283 0.92622 0.95787 0.95856 0.93189 0.92435 0.93587 0.91990 0.95524 0.97609 0.94541 0.93361 0.95694 0.92006 0.89063 0.94653 0.90108 0.90680 0.93443 0.93568 0.78008 0.84991 0.86139 0.86678 0.86772 0.86366 0.94140 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 6.73 37.15 0.25 -2.02 16 2 C -0.06 -1.13 0.61 -154.52 -0.09 -1.22 16 3 C -0.13 -2.37 8.05 37.16 0.30 -2.07 16 4 C 0.05 1.22 3.70 -27.88 -0.10 1.11 16 5 C -0.51 -14.08 7.87 -34.44 -0.27 -14.35 16 6 H 0.05 1.40 5.89 -52.49 -0.31 1.10 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.06 1.03 3.99 -3.83 -0.02 1.02 16 14 N -0.49 -8.15 4.03 -230.27 -0.93 -9.08 16 15 C 0.03 0.46 5.58 -1.90 -0.01 0.45 16 16 C -0.11 -1.46 5.91 -24.87 -0.15 -1.61 16 17 C -0.03 -0.35 0.62 -154.30 -0.10 -0.45 16 18 C 0.09 0.90 4.88 37.16 0.18 1.08 16 19 O -0.56 -5.48 11.40 -35.23 -0.40 -5.89 16 20 C -0.06 -0.79 4.46 -104.62 -0.47 -1.26 16 21 C -0.10 -1.54 8.62 -39.58 -0.34 -1.88 16 22 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 23 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 24 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 25 C -0.11 -1.34 8.54 -39.59 -0.34 -1.68 16 26 C 0.05 0.74 5.75 -2.64 -0.02 0.73 16 27 H 0.02 0.37 7.77 -51.93 -0.40 -0.03 16 28 H 0.05 0.98 7.11 -51.93 -0.37 0.61 16 29 H 0.06 1.14 6.30 -51.93 -0.33 0.81 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.25 6.71 -51.93 -0.35 0.90 16 32 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.04 1.00 7.39 -51.93 -0.38 0.62 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.02 0.39 7.33 -51.93 -0.38 0.01 16 37 H 0.06 1.06 7.82 -51.93 -0.41 0.65 16 38 H 0.09 1.42 5.84 -51.93 -0.30 1.12 16 39 H 0.04 0.48 7.65 -51.93 -0.40 0.08 16 40 H 0.08 1.19 6.21 -51.93 -0.32 0.87 16 41 H 0.07 0.96 7.40 -51.93 -0.38 0.57 16 42 H 0.05 0.43 7.12 -51.93 -0.37 0.06 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.37 1.92 9.12 45.56 0.42 2.33 16 45 H 0.13 2.16 7.05 -52.49 -0.37 1.79 16 46 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 47 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 48 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 49 H 0.12 1.28 5.61 -52.49 -0.29 0.99 16 50 H 0.04 0.53 7.30 -51.93 -0.38 0.15 16 51 H 0.09 1.38 7.61 -51.93 -0.40 0.99 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -31.40 382.78 -10.13 -41.53 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.82 Total: 3.69 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -2.46 Total: -26.58 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.19 Total: -35.41 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.40 Total: -5.89 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.40 -10.13 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291334928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.128 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds