Wall clock time and date at job start Tue Mar 31 2020 11:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 C 1.53005 * 109.47212 * 240.00426 * 2 1 3 5 5 C 1.50705 * 109.47058 * 59.99581 * 4 2 1 6 6 H 1.08001 * 119.99698 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99724 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00335 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99548 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47360 * 60.00068 * 9 7 5 11 11 H 1.48505 * 109.47052 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47179 * 299.99620 * 9 7 5 13 13 C 1.52995 * 109.47364 * 120.00570 * 2 1 3 14 14 N 1.46900 * 109.47519 * 68.14522 * 13 2 1 15 15 C 1.48537 * 110.99840 * 271.83792 * 14 13 2 16 16 C 1.54929 * 103.22821 * 200.27565 * 15 14 13 17 17 C 1.54603 * 102.91892 * 37.41482 * 16 15 14 18 18 C 1.53001 * 110.30898 * 97.05869 * 17 16 15 19 19 O 1.42901 * 109.46956 * 62.78933 * 18 17 16 20 20 C 1.50700 * 110.30562 * 219.12432 * 17 16 15 21 21 C 1.38233 * 120.00136 * 46.46649 * 20 17 16 22 22 C 1.38236 * 119.99994 * 179.76116 * 21 20 17 23 23 C 1.38231 * 119.99925 * 0.50815 * 22 21 20 24 24 C 1.38231 * 120.00083 * 359.74595 * 23 22 21 25 25 C 1.38229 * 119.99937 * 0.02562 * 24 23 22 26 26 C 1.48117 * 110.95447 * 154.46843 * 14 13 2 27 27 H 1.09002 * 109.47029 * 280.76121 * 1 2 3 28 28 H 1.09005 * 109.47484 * 40.75761 * 1 2 3 29 29 H 1.09001 * 109.47421 * 160.75761 * 1 2 3 30 30 H 1.09004 * 109.47591 * 186.58911 * 3 2 1 31 31 H 1.09005 * 109.47510 * 306.59232 * 3 2 1 32 32 H 1.09008 * 109.47284 * 66.59062 * 3 2 1 33 33 H 1.08997 * 109.47426 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46831 * 300.00093 * 4 2 1 35 35 H 0.97000 * 120.00018 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.46955 * 308.14098 * 13 2 1 37 37 H 1.09001 * 109.47532 * 188.14639 * 13 2 1 38 38 H 1.09002 * 110.66296 * 81.83895 * 15 14 13 39 39 H 1.09003 * 110.80890 * 318.78054 * 15 14 13 40 40 H 1.08995 * 110.72590 * 279.05980 * 16 15 14 41 41 H 1.08996 * 110.72519 * 155.77016 * 16 15 14 42 42 H 1.08993 * 109.47203 * 182.78865 * 18 17 16 43 43 H 1.08998 * 109.47126 * 302.78951 * 18 17 16 44 44 H 0.96705 * 113.99691 * 180.02562 * 19 18 17 45 45 H 1.08001 * 119.99878 * 359.97438 * 21 20 17 46 46 H 1.08005 * 119.99850 * 180.22912 * 22 21 20 47 47 H 1.08007 * 119.99980 * 179.72016 * 23 22 21 48 48 H 1.07997 * 120.00195 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.00033 * 179.97438 * 25 24 23 50 50 H 1.09003 * 109.99510 * 26.56448 * 26 14 13 51 51 H 1.08997 * 109.95086 * 265.20372 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4798 6 1 0.9169 0.8676 -2.3805 7 6 1.8702 -0.4820 -3.7321 8 7 2.6255 -1.5518 -3.8528 9 14 1.2480 0.3991 -5.2572 10 1 1.7440 1.7988 -5.2572 11 1 1.7419 -0.3017 -6.4698 12 1 -0.2370 0.4000 -5.2571 13 6 2.0399 -0.7213 1.2491 14 7 1.7172 -2.1513 1.1550 15 6 0.3682 -2.4302 1.7108 16 6 0.4170 -3.9486 2.0150 17 6 1.8636 -4.1534 2.5207 18 6 1.8980 -4.1424 4.0503 19 8 1.1269 -5.2359 4.5519 20 6 2.4226 -5.4505 1.9952 21 6 2.2728 -5.7773 0.6604 22 6 2.7899 -6.9648 0.1773 23 6 3.4475 -7.8303 1.0312 24 6 3.5927 -7.5060 2.3671 25 6 3.0798 -6.3163 2.8491 26 6 2.6608 -2.9614 1.9595 27 1 -0.3633 0.1919 1.0096 28 1 -0.3634 0.7784 -0.6709 29 1 -0.3634 -0.9702 -0.3387 30 1 3.1236 1.4448 -0.1179 31 1 1.5835 1.9893 -0.8251 32 1 1.7761 1.9212 0.9431 33 1 3.1299 -0.7216 -1.2491 34 1 1.6766 -1.7488 -1.2494 35 1 2.8598 -1.8831 -4.7339 36 1 1.5627 -0.2985 2.1332 37 1 3.1202 -0.5970 1.3250 38 1 -0.4044 -2.2101 0.9740 39 1 0.2004 -1.8600 2.6244 40 1 0.2391 -4.5292 1.1099 41 1 -0.3032 -4.2100 2.7901 42 1 2.9288 -4.2380 4.3912 43 1 1.4797 -3.2047 4.4163 44 1 1.1039 -5.2909 5.5171 45 1 1.7548 -5.1032 -0.0058 46 1 2.6761 -7.2184 -0.8663 47 1 3.8476 -8.7603 0.6547 48 1 4.1062 -8.1824 3.0343 49 1 3.1929 -6.0631 3.8929 50 1 3.0608 -2.3636 2.7785 51 1 3.4730 -3.3221 1.3284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291334928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:39 Heat of formation + Delta-G solvation = -45.443624 kcal Electronic energy + Delta-G solvation = -28048.354251 eV Core-core repulsion = 24525.297043 eV Total energy + Delta-G solvation = -3523.057209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43983 -39.53718 -38.14414 -36.95596 -34.57529 -33.48572 -31.80277 -30.98694 -29.78046 -29.05276 -27.88248 -27.06373 -25.69816 -24.65557 -23.44797 -22.97074 -22.08866 -20.26044 -19.44880 -18.34737 -18.14168 -18.07182 -16.77403 -16.46150 -16.33262 -15.93572 -15.73002 -15.36812 -15.25258 -14.69449 -14.56666 -14.39125 -14.24755 -14.03334 -13.94956 -13.75210 -13.39300 -13.22894 -13.07128 -12.88692 -12.78351 -12.65440 -12.47020 -12.34165 -12.23841 -12.19262 -12.02623 -11.98812 -11.74411 -11.59573 -11.27185 -11.18588 -10.81218 -10.70653 -10.69230 -10.40831 -9.72618 -9.49031 -9.07950 -8.05281 -6.11857 0.52612 0.58624 1.40141 1.42344 1.49336 2.47277 2.90332 3.07755 3.27625 3.34170 3.58057 3.78106 3.97832 4.11996 4.18236 4.20028 4.21307 4.30258 4.31760 4.35295 4.43057 4.48599 4.52839 4.64889 4.66537 4.71203 4.76567 4.82295 4.84967 4.93763 4.96254 5.01680 5.04065 5.13686 5.20254 5.21263 5.23860 5.26063 5.29975 5.54579 5.60682 5.66461 5.67580 5.70077 5.76343 5.81678 6.03080 6.13678 6.15364 6.20218 6.33208 6.47787 6.99371 7.07480 7.54350 9.05905 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.003941 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.327655 B = 7103.443289 C = 8509.715054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.057 4.057 3 C -0.121 4.121 4 C 0.064 3.936 5 C -0.517 4.517 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.270 1.270 13 C 0.068 3.932 14 N -0.524 5.524 15 C 0.037 3.963 16 C -0.102 4.102 17 C -0.024 4.024 18 C 0.096 3.904 19 O -0.577 6.577 20 C -0.067 4.067 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.109 4.109 26 C 0.056 3.944 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.064 0.936 33 H -0.034 1.034 34 H 0.003 0.997 35 H 0.256 0.744 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.396 0.604 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.141 0.859 50 H 0.062 0.938 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -7.730 20.847 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.058 4.058 3 C -0.178 4.178 4 C 0.027 3.973 5 C -0.555 4.555 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.195 1.195 13 C -0.060 4.060 14 N -0.248 5.248 15 C -0.090 4.090 16 C -0.140 4.140 17 C -0.025 4.025 18 C 0.018 3.982 19 O -0.385 6.385 20 C -0.068 4.068 21 C -0.147 4.147 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.127 4.127 26 C -0.072 4.072 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.083 0.917 33 H -0.015 1.015 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.246 0.754 45 H 0.118 0.882 46 H 0.138 0.862 47 H 0.158 0.842 48 H 0.164 0.836 49 H 0.159 0.841 50 H 0.081 0.919 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.996 -8.060 19.539 21.160 hybrid contribution 0.040 0.664 -0.417 0.785 sum -0.955 -7.396 19.122 20.525 Atomic orbital electron populations 1.21701 0.94848 1.00463 0.99794 1.20519 0.95683 0.94677 0.94899 1.21671 0.99757 0.95652 1.00747 1.18756 0.92547 0.94924 0.91097 1.21750 1.29953 1.11635 0.92162 0.92298 1.25847 0.95917 0.95888 1.02233 1.70132 1.39048 1.24902 1.23572 0.85765 0.78883 0.78864 0.79100 1.19420 1.21519 1.19513 1.22327 0.99564 0.87444 0.96655 1.64697 1.02375 1.06667 1.51058 1.23434 0.91834 0.95593 0.98183 1.22565 0.95280 0.95405 1.00780 1.20358 0.95417 0.91755 0.94942 1.22058 0.95463 0.89628 0.91001 1.86534 1.73899 1.50178 1.27856 1.19697 0.98169 0.95787 0.93109 1.21114 1.00507 0.97153 0.95913 1.21315 0.99162 0.94820 1.00329 1.21393 0.99334 1.00015 0.94143 1.21452 1.00037 0.97333 0.95765 1.21303 0.97266 0.94054 1.00044 1.22871 0.95390 0.93316 0.95583 0.92342 0.94297 0.94279 0.94588 0.93644 0.91745 1.01523 0.97831 0.93542 0.92692 0.92535 0.90756 0.92326 0.92615 0.89408 0.91876 0.92305 0.75441 0.88160 0.86175 0.84232 0.83604 0.84095 0.91937 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.09 6.73 71.98 0.48 -3.61 16 2 C -0.06 -2.28 0.61 -52.19 -0.03 -2.31 16 3 C -0.12 -4.43 8.05 71.98 0.58 -3.85 16 4 C 0.06 3.40 3.70 29.85 0.11 3.51 16 5 C -0.52 -29.46 7.87 25.60 0.20 -29.25 16 6 H 0.06 3.22 5.89 -2.91 -0.02 3.20 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.93 -59.19 13.29 21.45 0.28 -58.90 16 9 Si 0.95 45.86 29.54 68.60 2.03 47.88 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 C 0.07 2.27 3.99 86.30 0.34 2.61 16 14 N -0.52 -17.71 4.03 -882.43 -3.56 -21.27 16 15 C 0.04 1.05 5.58 86.65 0.48 1.54 16 16 C -0.10 -2.79 5.91 31.80 0.19 -2.60 16 17 C -0.02 -0.60 0.62 -52.05 -0.03 -0.63 16 18 C 0.10 1.66 4.88 71.98 0.35 2.02 16 19 O -0.58 -9.37 11.40 -148.98 -1.70 -11.07 16 20 C -0.07 -1.88 4.46 -19.87 -0.09 -1.97 16 21 C -0.13 -4.18 8.62 22.27 0.19 -3.99 16 22 C -0.14 -4.02 10.05 22.27 0.22 -3.80 16 23 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 24 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 25 C -0.11 -2.53 8.54 22.27 0.19 -2.34 16 26 C 0.06 1.63 5.75 86.40 0.50 2.13 16 27 H 0.06 1.73 7.77 -2.39 -0.02 1.71 16 28 H 0.04 1.49 7.11 -2.38 -0.02 1.47 16 29 H 0.04 1.57 6.30 -2.39 -0.02 1.55 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.79 6.71 -2.38 -0.02 1.77 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 33 H -0.03 -2.03 8.14 -2.39 -0.02 -2.04 16 34 H 0.00 0.20 7.39 -2.39 -0.02 0.18 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.06 1.51 7.33 -2.38 -0.02 1.49 16 37 H 0.06 1.92 7.82 -2.39 -0.02 1.90 16 38 H 0.07 2.36 5.84 -2.39 -0.01 2.35 16 39 H 0.06 1.40 7.65 -2.39 -0.02 1.39 16 40 H 0.06 1.78 6.21 -2.39 -0.01 1.76 16 41 H 0.09 2.14 7.40 -2.39 -0.02 2.12 16 42 H 0.06 0.91 7.12 -2.39 -0.02 0.89 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.40 2.52 9.12 -74.05 -0.68 1.84 16 45 H 0.10 3.78 7.05 -2.91 -0.02 3.76 16 46 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 47 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 48 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 49 H 0.14 2.59 5.61 -2.91 -0.02 2.57 16 50 H 0.06 1.51 7.30 -2.39 -0.02 1.49 16 51 H 0.06 1.93 7.61 -2.39 -0.02 1.91 16 Total: -1.00 -71.67 382.78 1.89 -69.78 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.24 Total: 21.24 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 4.60 Total: -47.66 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -3.27 Total: -80.17 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.70 Total: -11.07 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -71.67 1.89 -69.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291334928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.335 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds