Wall clock time and date at job start Tue Mar 31 2020 11:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 C 1.52997 * 109.47231 * 64.99332 * 3 2 1 5 5 C 1.52998 * 109.47075 * 64.36406 * 4 3 2 6 6 C 1.53004 * 109.47160 * 184.99831 * 3 2 1 7 7 H 1.08998 * 109.47059 * 306.40915 * 6 3 2 8 8 C 1.52998 * 109.46912 * 186.40917 * 6 3 2 9 9 C 1.50698 * 109.47090 * 66.40624 * 6 3 2 10 10 O 1.21280 * 120.00279 * 0.02562 * 9 6 3 11 11 N 1.34779 * 119.99827 * 179.97438 * 9 6 3 12 12 C 1.46498 * 120.00172 * 184.99378 * 11 9 6 13 13 H 1.09006 * 109.46898 * 328.84519 * 12 11 9 14 14 C 1.52998 * 109.47483 * 88.84299 * 12 11 9 15 15 C 1.50699 * 109.47355 * 185.68100 * 14 12 11 16 16 H 1.07999 * 120.00114 * 5.12566 * 15 14 12 17 17 C 1.37875 * 119.99650 * 185.12287 * 15 14 12 18 18 N 1.31508 * 120.00464 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99785 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47268 * 90.00111 * 19 17 15 21 21 H 1.48498 * 109.47177 * 209.99867 * 19 17 15 22 22 H 1.48498 * 109.47167 * 330.00404 * 19 17 15 23 23 C 1.50697 * 109.47412 * 208.84753 * 12 11 9 24 24 C 1.38229 * 119.99839 * 319.72792 * 23 12 11 25 25 C 1.38233 * 120.00228 * 179.80960 * 24 23 12 26 26 C 1.38235 * 120.00020 * 0.39317 * 25 24 23 27 27 C 1.38246 * 119.99710 * 359.85878 * 26 25 24 28 28 C 1.38234 * 120.00010 * 139.99555 * 23 12 11 29 29 H 1.09008 * 109.46683 * 60.00358 * 1 2 3 30 30 H 1.08999 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47811 * 300.00749 * 1 2 3 32 32 H 1.08998 * 109.47811 * 239.99251 * 2 1 3 33 33 H 1.09005 * 109.46864 * 119.99138 * 2 1 3 34 34 H 1.08997 * 109.46646 * 304.99570 * 3 2 1 35 35 H 1.09008 * 109.46847 * 184.36118 * 4 3 2 36 36 H 1.08993 * 109.47424 * 304.36155 * 4 3 2 37 37 H 1.08999 * 109.47241 * 175.39868 * 5 4 3 38 38 H 1.08994 * 109.47361 * 295.40158 * 5 4 3 39 39 H 1.09000 * 109.47227 * 55.40400 * 5 4 3 40 40 H 1.08995 * 109.47542 * 295.86081 * 8 6 3 41 41 H 1.08998 * 109.47300 * 55.86966 * 8 6 3 42 42 H 1.09001 * 109.46699 * 175.86214 * 8 6 3 43 43 H 0.96997 * 119.99881 * 4.99316 * 11 9 6 44 44 H 1.09002 * 109.47475 * 305.68604 * 14 12 11 45 45 H 1.09005 * 109.46645 * 65.68111 * 14 12 11 46 46 H 0.97000 * 120.00320 * 179.97438 * 18 17 15 47 47 H 1.08006 * 120.00516 * 359.97438 * 24 23 12 48 48 H 1.08006 * 120.00611 * 180.22741 * 25 24 23 49 49 H 1.08001 * 120.00298 * 179.83376 * 26 25 24 50 50 H 1.07999 * 119.99482 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00334 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3072 5 6 2.3323 1.4364 2.4813 6 6 3.5648 1.4444 -0.1257 7 1 3.9941 0.8111 0.6507 8 6 4.0880 2.8732 0.0345 9 6 3.9578 0.9143 -1.4805 10 8 3.1026 0.5695 -2.2683 11 7 5.2598 0.8244 -1.8173 12 6 5.6396 0.4134 -3.1711 13 1 4.8896 -0.2716 -3.5667 14 6 5.7296 1.6466 -4.0722 15 6 5.9828 1.2132 -5.4931 16 1 5.9883 0.1629 -5.7445 17 6 6.2073 2.1576 -6.4723 18 7 6.2010 3.4365 -6.1662 19 14 6.5203 1.6204 -8.2338 20 1 5.2290 1.5338 -8.9619 21 1 7.4011 2.6104 -8.9041 22 1 7.1797 0.2898 -8.2357 23 6 6.9784 -0.2772 -3.1295 24 6 7.9821 0.2097 -2.3133 25 6 9.2089 -0.4260 -2.2721 26 6 9.4347 -1.5438 -3.0533 27 6 8.4325 -2.0277 -3.8736 28 6 7.2045 -1.3942 -3.9118 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6054 1.9815 -0.8419 35 1 1.9304 3.1755 1.2750 36 1 0.5548 2.0571 1.4343 37 1 2.1090 1.9734 3.4031 38 1 1.9752 0.4098 2.5633 39 1 3.4093 1.4342 2.3139 40 1 3.7173 3.4898 -0.7843 41 1 3.7418 3.2827 0.9834 42 1 5.1779 2.8649 0.0184 43 1 5.9453 1.0319 -1.1631 44 1 4.7929 2.2018 -4.0231 45 1 6.5475 2.2837 -3.7354 46 1 6.3593 4.1009 -6.8550 47 1 7.8070 1.0853 -1.7056 48 1 9.9920 -0.0478 -1.6316 49 1 10.3940 -2.0390 -3.0232 50 1 8.6091 -2.9008 -4.4842 51 1 6.4216 -1.7723 -4.5525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341876895.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:22 Heat of formation + Delta-G solvation = -46.275252 kcal Electronic energy + Delta-G solvation = -27510.658642 eV Core-core repulsion = 23987.565371 eV Total energy + Delta-G solvation = -3523.093271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.06133 -38.85085 -37.15131 -34.99282 -33.01665 -32.31338 -31.13474 -30.58551 -30.29620 -28.55159 -26.51436 -25.19751 -24.08903 -22.63262 -22.32675 -21.99068 -20.41097 -19.48876 -18.76540 -17.37278 -16.65572 -15.97875 -15.65195 -15.23629 -14.94041 -14.64708 -14.51555 -14.40905 -13.74907 -13.64855 -13.21386 -13.02693 -12.96954 -12.83979 -12.74105 -12.57459 -12.39483 -12.17126 -12.11845 -11.79831 -11.49950 -11.46870 -11.32252 -11.10564 -10.95288 -10.84728 -10.72770 -10.60981 -10.35098 -10.24723 -10.20267 -9.95780 -9.94934 -9.32237 -8.99924 -8.45821 -8.44433 -8.33688 -8.00793 -5.99292 -4.00425 1.84255 1.87458 3.15325 3.33789 3.39674 3.42647 3.71559 4.29949 4.48443 4.66195 4.85856 4.90922 5.13555 5.23768 5.27304 5.29816 5.33013 5.37876 5.38440 5.40399 5.41114 5.49230 5.54166 5.64711 5.68975 5.80816 5.90051 5.92079 5.93398 5.96555 6.01198 6.05755 6.10709 6.19934 6.23749 6.28759 6.33686 6.41325 6.52858 6.55014 6.63159 6.76024 6.86692 6.91755 6.93727 7.19346 7.45212 7.63842 7.69618 7.98411 8.08794 8.37103 8.78159 9.03702 9.62631 11.12370 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.003980 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.665212 B = 7033.663458 C = 8288.151434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.067 4.067 4 C -0.123 4.123 5 C -0.157 4.157 6 C -0.107 4.107 7 H 0.092 0.908 8 C -0.147 4.147 9 C 0.515 3.485 10 O -0.535 6.535 11 N -0.723 5.723 12 C 0.178 3.822 13 H 0.089 0.911 14 C 0.027 3.973 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.046 4.046 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.390 0.610 44 H 0.021 0.979 45 H 0.022 0.978 46 H 0.260 0.740 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 -5.680 16.753 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.085 4.085 4 C -0.161 4.161 5 C -0.214 4.214 6 C -0.128 4.128 7 H 0.110 0.890 8 C -0.205 4.205 9 C 0.301 3.699 10 O -0.412 6.412 11 N -0.373 5.373 12 C 0.075 3.925 13 H 0.107 0.893 14 C -0.011 4.011 15 C -0.550 4.550 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.047 4.047 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.154 4.154 27 C -0.139 4.139 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.224 0.776 44 H 0.040 0.960 45 H 0.041 0.959 46 H 0.069 0.931 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.131 0.869 50 H 0.133 0.867 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.469 -5.742 16.089 17.261 hybrid contribution 0.726 0.056 -0.874 1.138 sum -1.743 -5.686 15.215 16.336 Atomic orbital electron populations 1.21765 0.96306 1.01034 1.01444 1.21695 0.95697 0.96386 1.02536 1.20961 0.92684 0.97072 0.97832 1.21667 1.00446 0.99566 0.94385 1.21900 1.01026 1.00747 0.97719 1.21398 0.97773 0.98338 0.95332 0.89005 1.21858 1.01056 0.94793 1.02768 1.20499 0.82590 0.77966 0.88894 1.90668 1.49469 1.48606 1.52458 1.46278 1.07049 1.69471 1.14549 1.20323 0.91858 0.98917 0.81378 0.89326 1.19404 0.97682 0.90801 0.93221 1.21058 1.48326 0.93001 0.92618 0.92435 1.24932 0.95411 0.94875 0.98840 1.69955 1.50020 1.00004 1.33396 0.86633 0.78155 0.78452 0.85063 1.20649 1.21293 1.19792 1.19946 0.95861 0.93967 0.94901 1.20814 0.93400 0.99449 1.00061 1.20968 0.96807 0.96322 0.99897 1.20972 0.98724 0.97536 0.98138 1.21041 0.93672 1.00080 0.99127 1.20976 0.97384 0.95127 0.98188 0.92693 0.93323 0.93115 0.90109 0.92723 0.90258 0.91756 0.91709 0.93249 0.92586 0.92327 0.91765 0.91320 0.92276 0.77572 0.96039 0.95928 0.93063 0.86826 0.86766 0.86914 0.86676 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.67 37.16 0.36 -1.29 16 2 C -0.13 -1.57 5.06 -26.73 -0.14 -1.70 16 3 C -0.07 -0.82 1.41 -90.62 -0.13 -0.94 16 4 C -0.12 -1.18 4.97 -26.73 -0.13 -1.31 16 5 C -0.16 -1.31 9.04 37.16 0.34 -0.98 16 6 C -0.11 -1.34 1.71 -91.77 -0.16 -1.50 16 7 H 0.09 0.98 6.64 -51.93 -0.34 0.64 16 8 C -0.15 -1.68 8.51 37.16 0.32 -1.36 16 9 C 0.51 8.80 6.83 -10.98 -0.07 8.73 16 10 O -0.54 -11.26 13.65 5.56 0.08 -11.19 16 11 N -0.72 -12.26 4.88 -54.93 -0.27 -12.52 16 12 C 0.18 3.68 2.29 -69.09 -0.16 3.52 16 13 H 0.09 2.00 7.25 -51.93 -0.38 1.63 16 14 C 0.03 0.68 4.75 -27.88 -0.13 0.55 16 15 C -0.51 -14.24 8.53 -34.44 -0.29 -14.54 16 16 H 0.06 1.55 6.78 -52.49 -0.36 1.20 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.05 -0.86 4.49 -104.63 -0.47 -1.33 16 24 C -0.12 -1.97 9.08 -39.59 -0.36 -2.33 16 25 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.14 -1.98 10.05 -39.58 -0.40 -2.37 16 27 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 28 C -0.10 -1.78 8.83 -39.58 -0.35 -2.13 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.49 6.47 -51.93 -0.34 0.15 16 32 H 0.08 1.25 6.01 -51.93 -0.31 0.94 16 33 H 0.05 0.60 6.42 -51.93 -0.33 0.27 16 34 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 35 H 0.06 0.59 6.51 -51.92 -0.34 0.25 16 36 H 0.06 0.60 6.37 -51.93 -0.33 0.26 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.47 6.67 -51.93 -0.35 0.12 16 39 H 0.06 0.48 5.89 -51.93 -0.31 0.17 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.63 5.82 -51.93 -0.30 0.33 16 42 H 0.06 0.63 7.81 -51.93 -0.41 0.22 16 43 H 0.39 5.48 6.55 -40.82 -0.27 5.21 16 44 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.02 0.61 8.13 -51.93 -0.42 0.18 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.11 1.68 6.89 -52.48 -0.36 1.32 16 48 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 51 H 0.12 2.16 7.84 -52.49 -0.41 1.75 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -32.11 392.57 -9.71 -41.81 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.48 Total: 7.06 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.67 Total: -21.84 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.47 Total: -38.67 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.11 -9.71 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341876895.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.462 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds