Wall clock time and date at job start Tue Mar 31 2020 11:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 C 1.52997 * 109.47231 * 64.99332 * 3 2 1 5 5 C 1.52998 * 109.47075 * 64.36406 * 4 3 2 6 6 C 1.53004 * 109.47160 * 184.99831 * 3 2 1 7 7 H 1.08998 * 109.47059 * 306.40915 * 6 3 2 8 8 C 1.52998 * 109.46912 * 186.40917 * 6 3 2 9 9 C 1.50698 * 109.47090 * 66.40624 * 6 3 2 10 10 O 1.21280 * 120.00279 * 0.02562 * 9 6 3 11 11 N 1.34779 * 119.99827 * 179.97438 * 9 6 3 12 12 C 1.46498 * 120.00172 * 184.99378 * 11 9 6 13 13 H 1.09006 * 109.46898 * 328.84519 * 12 11 9 14 14 C 1.52998 * 109.47483 * 88.84299 * 12 11 9 15 15 C 1.50699 * 109.47355 * 185.68100 * 14 12 11 16 16 H 1.07999 * 120.00114 * 5.12566 * 15 14 12 17 17 C 1.37875 * 119.99650 * 185.12287 * 15 14 12 18 18 N 1.31508 * 120.00464 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99785 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47268 * 90.00111 * 19 17 15 21 21 H 1.48498 * 109.47177 * 209.99867 * 19 17 15 22 22 H 1.48498 * 109.47167 * 330.00404 * 19 17 15 23 23 C 1.50697 * 109.47412 * 208.84753 * 12 11 9 24 24 C 1.38229 * 119.99839 * 319.72792 * 23 12 11 25 25 C 1.38233 * 120.00228 * 179.80960 * 24 23 12 26 26 C 1.38235 * 120.00020 * 0.39317 * 25 24 23 27 27 C 1.38246 * 119.99710 * 359.85878 * 26 25 24 28 28 C 1.38234 * 120.00010 * 139.99555 * 23 12 11 29 29 H 1.09008 * 109.46683 * 60.00358 * 1 2 3 30 30 H 1.08999 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47811 * 300.00749 * 1 2 3 32 32 H 1.08998 * 109.47811 * 239.99251 * 2 1 3 33 33 H 1.09005 * 109.46864 * 119.99138 * 2 1 3 34 34 H 1.08997 * 109.46646 * 304.99570 * 3 2 1 35 35 H 1.09008 * 109.46847 * 184.36118 * 4 3 2 36 36 H 1.08993 * 109.47424 * 304.36155 * 4 3 2 37 37 H 1.08999 * 109.47241 * 175.39868 * 5 4 3 38 38 H 1.08994 * 109.47361 * 295.40158 * 5 4 3 39 39 H 1.09000 * 109.47227 * 55.40400 * 5 4 3 40 40 H 1.08995 * 109.47542 * 295.86081 * 8 6 3 41 41 H 1.08998 * 109.47300 * 55.86966 * 8 6 3 42 42 H 1.09001 * 109.46699 * 175.86214 * 8 6 3 43 43 H 0.96997 * 119.99881 * 4.99316 * 11 9 6 44 44 H 1.09002 * 109.47475 * 305.68604 * 14 12 11 45 45 H 1.09005 * 109.46645 * 65.68111 * 14 12 11 46 46 H 0.97000 * 120.00320 * 179.97438 * 18 17 15 47 47 H 1.08006 * 120.00516 * 359.97438 * 24 23 12 48 48 H 1.08006 * 120.00611 * 180.22741 * 25 24 23 49 49 H 1.08001 * 120.00298 * 179.83376 * 26 25 24 50 50 H 1.07999 * 119.99482 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00334 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3072 5 6 2.3323 1.4364 2.4813 6 6 3.5648 1.4444 -0.1257 7 1 3.9941 0.8111 0.6507 8 6 4.0880 2.8732 0.0345 9 6 3.9578 0.9143 -1.4805 10 8 3.1026 0.5695 -2.2683 11 7 5.2598 0.8244 -1.8173 12 6 5.6396 0.4134 -3.1711 13 1 4.8896 -0.2716 -3.5667 14 6 5.7296 1.6466 -4.0722 15 6 5.9828 1.2132 -5.4931 16 1 5.9883 0.1629 -5.7445 17 6 6.2073 2.1576 -6.4723 18 7 6.2010 3.4365 -6.1662 19 14 6.5203 1.6204 -8.2338 20 1 5.2290 1.5338 -8.9619 21 1 7.4011 2.6104 -8.9041 22 1 7.1797 0.2898 -8.2357 23 6 6.9784 -0.2772 -3.1295 24 6 7.9821 0.2097 -2.3133 25 6 9.2089 -0.4260 -2.2721 26 6 9.4347 -1.5438 -3.0533 27 6 8.4325 -2.0277 -3.8736 28 6 7.2045 -1.3942 -3.9118 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6054 1.9815 -0.8419 35 1 1.9304 3.1755 1.2750 36 1 0.5548 2.0571 1.4343 37 1 2.1090 1.9734 3.4031 38 1 1.9752 0.4098 2.5633 39 1 3.4093 1.4342 2.3139 40 1 3.7173 3.4898 -0.7843 41 1 3.7418 3.2827 0.9834 42 1 5.1779 2.8649 0.0184 43 1 5.9453 1.0319 -1.1631 44 1 4.7929 2.2018 -4.0231 45 1 6.5475 2.2837 -3.7354 46 1 6.3593 4.1009 -6.8550 47 1 7.8070 1.0853 -1.7056 48 1 9.9920 -0.0478 -1.6316 49 1 10.3940 -2.0390 -3.0232 50 1 8.6091 -2.9008 -4.4842 51 1 6.4216 -1.7723 -4.5525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341876895.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:20 Heat of formation + Delta-G solvation = -63.713538 kcal Electronic energy + Delta-G solvation = -27511.414823 eV Core-core repulsion = 23987.565371 eV Total energy + Delta-G solvation = -3523.849452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41757 -40.11732 -38.29877 -36.59001 -34.91828 -33.65226 -32.30319 -31.71759 -31.44522 -30.35744 -27.44957 -26.89762 -25.18396 -24.01113 -23.75536 -23.27385 -21.70107 -21.01331 -19.80563 -18.70558 -18.52825 -17.39024 -16.89261 -16.63458 -16.39741 -16.13094 -15.89451 -15.65596 -15.11073 -14.84750 -14.48077 -14.35909 -14.18271 -14.11359 -13.96345 -13.84379 -13.75791 -13.45301 -13.15451 -13.07519 -12.92490 -12.73124 -12.67581 -12.55324 -12.44445 -12.16695 -11.97374 -11.88083 -11.81617 -11.64015 -11.40888 -11.30723 -11.18895 -11.07735 -10.59041 -10.52555 -9.93551 -9.70519 -9.44781 -8.21421 -6.29998 0.55983 0.60906 1.35696 1.37306 1.47649 1.75421 2.30034 2.44232 3.00916 3.13374 3.64839 3.81432 3.89539 3.92259 4.04975 4.17265 4.24513 4.34693 4.37934 4.38902 4.44707 4.51284 4.54235 4.62384 4.70724 4.73347 4.80846 4.83285 4.86401 4.93323 4.99888 5.06818 5.10233 5.14471 5.17088 5.22372 5.26964 5.32386 5.34871 5.40819 5.44626 5.48109 5.55040 5.56435 5.66034 5.69060 5.73032 5.74037 5.91024 6.20340 6.23123 6.68785 6.81828 7.37034 7.40715 8.90886 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.003980 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.665212 B = 7033.663458 C = 8288.151434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.066 4.066 4 C -0.117 4.117 5 C -0.156 4.156 6 C -0.096 4.096 7 H 0.123 0.877 8 C -0.144 4.144 9 C 0.505 3.495 10 O -0.582 6.582 11 N -0.714 5.714 12 C 0.196 3.804 13 H 0.058 0.942 14 C 0.042 3.958 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.261 1.261 23 C -0.072 4.072 24 C -0.128 4.128 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.124 4.124 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.407 0.593 44 H -0.025 1.025 45 H 0.004 0.996 46 H 0.262 0.738 47 H 0.126 0.874 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.140 0.860 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 -6.635 18.914 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.085 4.085 4 C -0.154 4.154 5 C -0.213 4.213 6 C -0.117 4.117 7 H 0.140 0.860 8 C -0.202 4.202 9 C 0.293 3.707 10 O -0.462 6.462 11 N -0.366 5.366 12 C 0.091 3.909 13 H 0.076 0.924 14 C 0.004 3.996 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.781 3.219 20 H -0.203 1.203 21 H -0.205 1.205 22 H -0.185 1.185 23 C -0.073 4.073 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.143 4.143 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.244 0.756 44 H -0.006 1.006 45 H 0.022 0.978 46 H 0.071 0.929 47 H 0.143 0.857 48 H 0.168 0.832 49 H 0.168 0.832 50 H 0.158 0.842 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.315 -6.701 18.284 19.476 hybrid contribution 0.067 0.332 -1.533 1.570 sum -0.248 -6.369 16.751 17.922 Atomic orbital electron populations 1.21744 0.95351 1.01571 1.01594 1.21647 0.96624 0.96303 1.01579 1.20941 0.92208 0.96902 0.98416 1.21625 1.01067 0.99656 0.93046 1.21901 1.01060 1.00820 0.97473 1.21443 0.98263 0.99330 0.92652 0.85971 1.21881 1.01656 0.93370 1.03264 1.21505 0.81914 0.76842 0.90405 1.90648 1.50670 1.50472 1.54400 1.46131 1.07784 1.69149 1.13500 1.19698 0.92889 0.96051 0.82246 0.92429 1.19142 0.94248 0.92186 0.93980 1.21425 1.47800 0.93211 0.93875 0.92207 1.25828 0.95173 0.94867 1.03357 1.70086 1.51071 1.01157 1.34866 0.85581 0.78195 0.78603 0.79569 1.20308 1.20489 1.18498 1.19809 0.95216 0.95114 0.97167 1.21037 0.93771 1.00025 0.99817 1.21400 0.96566 0.95868 0.99779 1.21452 0.99690 0.97026 0.96511 1.21356 0.92772 1.00561 0.99520 1.21067 0.98584 0.95910 0.98701 0.94488 0.92626 0.90956 0.93899 0.90660 0.93738 0.91144 0.91120 0.91700 0.92466 0.91853 0.94528 0.88204 0.91279 0.75614 1.00650 0.97775 0.92909 0.85654 0.83230 0.83191 0.84246 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.67 71.98 0.70 -2.55 16 2 C -0.12 -3.14 5.06 30.59 0.15 -2.99 16 3 C -0.07 -1.63 1.41 -10.79 -0.02 -1.64 16 4 C -0.12 -2.01 4.97 30.59 0.15 -1.86 16 5 C -0.16 -2.09 9.04 71.98 0.65 -1.44 16 6 C -0.10 -2.39 1.71 -11.54 -0.02 -2.41 16 7 H 0.12 2.35 6.64 -2.39 -0.02 2.34 16 8 C -0.14 -3.19 8.51 71.98 0.61 -2.57 16 9 C 0.51 18.37 6.83 87.66 0.60 18.97 16 10 O -0.58 -26.82 13.65 -3.03 -0.04 -26.86 16 11 N -0.71 -25.46 4.88 -446.10 -2.18 -27.64 16 12 C 0.20 8.63 2.29 44.24 0.10 8.73 16 13 H 0.06 2.86 7.25 -2.38 -0.02 2.84 16 14 C 0.04 2.32 4.75 29.85 0.14 2.46 16 15 C -0.52 -30.59 8.53 25.60 0.22 -30.37 16 16 H 0.06 3.38 6.78 -2.91 -0.02 3.36 16 17 C 0.01 0.33 5.46 84.66 0.46 0.79 16 18 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 19 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.07 -2.78 4.49 -19.87 -0.09 -2.87 16 24 C -0.13 -4.11 9.08 22.27 0.20 -3.91 16 25 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 26 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 27 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 28 C -0.12 -4.56 8.83 22.27 0.20 -4.37 16 29 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.29 6.47 -2.39 -0.02 1.27 16 32 H 0.04 1.42 6.01 -2.39 -0.01 1.41 16 33 H 0.07 1.57 6.42 -2.38 -0.02 1.55 16 34 H 0.04 1.40 7.90 -2.39 -0.02 1.39 16 35 H 0.07 1.14 6.51 -2.38 -0.02 1.13 16 36 H 0.07 1.16 6.37 -2.39 -0.02 1.14 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.77 6.67 -2.39 -0.02 0.76 16 39 H 0.06 0.80 5.89 -2.39 -0.01 0.78 16 40 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.60 5.82 -2.39 -0.01 1.58 16 42 H 0.07 1.38 7.81 -2.39 -0.02 1.36 16 43 H 0.41 11.51 6.55 -92.71 -0.61 10.90 16 44 H -0.02 -1.56 8.14 -2.39 -0.02 -1.58 16 45 H 0.00 0.22 8.13 -2.38 -0.02 0.20 16 46 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.13 3.58 6.89 -2.91 -0.02 3.56 16 48 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 49 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 50 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 51 H 0.11 4.06 7.84 -2.91 -0.02 4.04 16 Total: -1.00 -75.48 392.57 5.13 -70.35 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.30 Total: 29.40 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 4.73 Total: -35.45 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.89 Total: -85.25 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.04 Total: -26.86 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -75.48 5.13 -70.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341876895.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.637 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds