Wall clock time and date at job start Tue Mar 31 2020 11:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 117.00124 * 2 1 4 4 C 1.38765 * 120.16847 * 359.97438 * 3 2 1 5 5 C 1.37833 * 119.70829 * 180.08369 * 4 3 2 6 6 C 1.38956 * 120.62595 * 359.97438 * 5 4 3 7 7 C 1.37715 * 119.77360 * 359.81938 * 6 5 4 8 8 C 1.38416 * 120.17539 * 179.97438 * 3 2 1 9 9 C 1.50641 * 122.57161 * 180.30243 * 7 6 5 10 10 H 1.09006 * 109.24912 * 102.73901 * 9 7 6 11 11 N 1.46898 * 109.25415 * 222.19743 * 9 7 6 12 12 C 1.46901 * 111.00116 * 206.26862 * 11 9 7 13 13 C 1.53002 * 109.47167 * 174.46477 * 12 11 9 14 14 C 1.53003 * 109.46740 * 299.99862 * 13 12 11 15 15 C 1.53001 * 109.46714 * 59.99715 * 13 12 11 16 16 C 1.53000 * 109.47153 * 179.97438 * 13 12 11 17 17 C 1.50692 * 109.46892 * 179.97438 * 16 13 12 18 18 H 1.08004 * 120.00661 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00090 * 179.97438 * 17 16 13 20 20 N 1.31522 * 119.99397 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00367 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47463 * 90.00277 * 21 19 17 23 23 H 1.48498 * 109.47005 * 210.00502 * 21 19 17 24 24 H 1.48500 * 109.46995 * 329.99779 * 21 19 17 25 25 C 1.52725 * 110.59861 * 342.49024 * 9 7 6 26 26 C 1.53341 * 108.38541 * 51.02795 * 25 9 7 27 27 C 1.50660 * 117.68808 * 179.71080 * 6 5 4 28 28 H 1.08998 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47490 * 299.99932 * 1 2 3 30 30 H 1.09000 * 109.46872 * 60.00094 * 1 2 3 31 31 H 1.07995 * 120.14688 * 0.10442 * 4 3 2 32 32 H 1.07998 * 119.68838 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.74744 * 0.05073 * 8 3 2 34 34 H 1.00899 * 110.99931 * 82.31179 * 11 9 7 35 35 H 1.09003 * 109.46946 * 54.46860 * 12 11 9 36 36 H 1.08996 * 109.46988 * 294.46755 * 12 11 9 37 37 H 1.09004 * 109.47272 * 60.00411 * 14 13 12 38 38 H 1.09007 * 109.46380 * 179.97438 * 14 13 12 39 39 H 1.08994 * 109.47251 * 299.99752 * 14 13 12 40 40 H 1.08992 * 109.47194 * 60.00483 * 15 13 12 41 41 H 1.09007 * 109.46470 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.47265 * 299.99645 * 15 13 12 43 43 H 1.09001 * 109.46735 * 300.00009 * 16 13 12 44 44 H 1.09006 * 109.46636 * 59.99980 * 16 13 12 45 45 H 0.97000 * 119.99504 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.67974 * 170.75619 * 25 9 7 47 47 H 1.09001 * 109.68218 * 291.30656 * 25 9 7 48 48 H 1.08993 * 109.68329 * 170.34535 * 26 25 9 49 49 H 1.09005 * 109.73393 * 49.79193 * 26 25 9 50 50 H 1.08994 * 109.25125 * 282.74338 * 27 6 5 51 51 H 1.09000 * 109.24937 * 42.17237 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2937 2.3769 -0.0005 5 6 1.9293 3.5999 -0.0023 6 6 3.3167 3.6767 -0.0030 7 6 4.0655 2.5209 0.0019 8 6 3.4280 1.2876 0.0005 9 6 5.5719 2.5305 0.0081 10 1 5.9285 2.3074 1.0137 11 7 6.0668 1.5049 -0.9198 12 6 7.4028 1.0386 -0.5253 13 6 7.8256 -0.1213 -1.4292 14 6 6.8230 -1.2686 -1.2892 15 6 7.8594 0.3519 -2.8838 16 6 9.2173 -0.6066 -1.0187 17 6 9.6335 -1.7493 -1.9086 18 1 8.9717 -2.0947 -2.6891 19 6 10.8595 -2.3534 -1.7270 20 7 11.6656 -1.9324 -0.7768 21 14 11.3757 -3.7694 -2.8304 22 1 12.0924 -3.2367 -4.0169 23 1 12.2741 -4.6814 -2.0778 24 1 10.1711 -4.5161 -3.2737 25 6 6.1023 3.8967 -0.4218 26 6 5.4053 4.9727 0.4195 27 6 3.9421 5.0473 -0.0116 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2149 2.3264 0.0007 32 1 1.3435 4.5072 -0.0023 33 1 4.0150 0.3810 0.0001 34 1 6.0688 1.8468 -1.8691 35 1 7.3786 0.7014 0.5110 36 1 8.1169 1.8559 -0.6250 37 1 5.8317 -0.9226 -1.5819 38 1 7.1241 -2.0947 -1.9335 39 1 6.7989 -1.6056 -0.2529 40 1 8.5736 1.1692 -2.9835 41 1 8.1611 -0.4743 -3.5276 42 1 6.8680 0.6979 -3.1764 43 1 9.9313 0.2110 -1.1188 44 1 9.1936 -0.9435 0.0177 45 1 12.5283 -2.3571 -0.6493 46 1 7.1787 3.9412 -0.2563 47 1 5.8857 4.0589 -1.4777 48 1 5.8864 5.9367 0.2542 49 1 5.4639 4.7094 1.4756 50 1 3.8846 5.4622 -1.0179 51 1 3.3975 5.6951 0.6753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348244278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:13 Heat of formation + Delta-G solvation = -39.648539 kcal Electronic energy + Delta-G solvation = -27192.197973 eV Core-core repulsion = 23669.392058 eV Total energy + Delta-G solvation = -3522.805915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53395 -38.90404 -37.37042 -35.54456 -33.96047 -32.29546 -30.89310 -29.76273 -28.52223 -27.00854 -26.62900 -26.25485 -25.04931 -23.39369 -22.49756 -22.35943 -21.49812 -19.62707 -18.14069 -17.47948 -16.41617 -16.18994 -15.85908 -15.71656 -15.25039 -14.92019 -14.78656 -14.25798 -13.99511 -13.80199 -13.59570 -13.29883 -12.98635 -12.86278 -12.72264 -12.68781 -12.27158 -12.17085 -11.97424 -11.91239 -11.67983 -11.28258 -11.10040 -10.99494 -10.86402 -10.76739 -10.74936 -10.68067 -10.46392 -10.41758 -10.21761 -10.06369 -9.62222 -8.96432 -8.82366 -8.73447 -8.28123 -8.04265 -8.00905 -5.92921 -3.92592 1.32902 1.43549 3.22863 3.35752 3.42334 3.45671 3.70914 4.37871 4.52857 4.57566 4.70076 4.77828 4.84033 4.94523 4.96997 5.02709 5.05842 5.24086 5.28770 5.40116 5.43036 5.46224 5.52945 5.59505 5.71610 5.77342 5.81597 5.83712 5.87274 6.00371 6.04242 6.10040 6.17846 6.30498 6.37720 6.38649 6.41889 6.57267 6.65739 6.73930 6.79660 6.87887 6.89501 7.26666 7.28588 7.32984 7.41376 7.45373 7.70696 7.75397 7.90410 8.07899 8.52759 9.12932 9.70035 11.18805 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.003061 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.254252 B = 9145.426360 C =10530.552045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.113 3.887 4 C -0.208 4.208 5 C -0.091 4.091 6 C -0.113 4.113 7 C -0.027 4.027 8 C -0.116 4.116 9 C 0.125 3.875 10 H 0.088 0.912 11 N -0.677 5.677 12 C 0.070 3.930 13 C -0.056 4.056 14 C -0.116 4.116 15 C -0.128 4.128 16 C 0.034 3.966 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.147 4.147 26 C -0.116 4.116 27 C -0.074 4.074 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.341 0.659 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.034 0.966 43 H 0.012 0.988 44 H 0.014 0.986 45 H 0.258 0.742 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.241 13.622 2.458 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.068 3.932 4 C -0.227 4.227 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.028 4.028 8 C -0.135 4.135 9 C 0.015 3.985 10 H 0.106 0.894 11 N -0.308 5.308 12 C -0.058 4.058 13 C -0.057 4.057 14 C -0.173 4.173 15 C -0.185 4.185 16 C -0.003 4.003 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.187 4.187 26 C -0.154 4.154 27 C -0.111 4.111 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.306 12.850 2.848 25.043 hybrid contribution 0.634 0.102 -0.814 1.037 sum -20.672 12.951 2.034 24.479 Atomic orbital electron populations 1.22996 0.78934 1.03695 1.00961 1.86109 1.20872 1.27044 1.88929 1.19008 0.92574 0.83937 0.97644 1.21100 0.99599 0.92533 1.09462 1.20810 0.93795 0.96827 0.99521 1.19528 0.93060 0.94678 1.04145 1.19376 0.94884 0.91246 0.97267 1.20541 0.90632 0.99332 1.02976 1.20354 0.90155 0.90004 0.97973 0.89363 1.60602 1.26876 1.37761 1.05518 1.22156 0.86938 0.96903 0.99806 1.20609 0.98211 0.93242 0.93625 1.21599 0.97256 0.97824 1.00647 1.21754 0.98496 1.00912 0.97357 1.19119 0.88928 0.95771 0.96527 1.21250 1.01223 1.15861 1.16020 0.92303 1.25016 0.96881 0.97249 0.95482 1.69972 1.09738 1.42031 1.32094 0.86672 0.78513 0.82621 0.80670 1.20865 1.21406 1.19904 1.22291 1.00466 0.95586 1.00312 1.21496 0.94874 0.98904 1.00119 1.20385 0.95664 0.93423 1.01590 0.88439 0.92983 0.92940 0.86001 0.86371 0.83954 0.83938 0.91595 0.95723 0.93753 0.92816 0.94265 0.94223 0.91883 0.94732 0.96987 0.96741 0.93219 0.91219 0.91478 0.91617 0.91564 0.91109 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.82 101.05 0.99 1.23 16 2 O -0.32 -3.99 10.50 -19.44 -0.20 -4.20 16 3 C 0.11 1.46 6.68 -39.32 -0.26 1.20 16 4 C -0.21 -2.26 9.04 -39.53 -0.36 -2.61 16 5 C -0.09 -0.95 9.60 -39.46 -0.38 -1.32 16 6 C -0.11 -1.26 5.74 -104.57 -0.60 -1.86 16 7 C -0.03 -0.34 5.55 -104.62 -0.58 -0.92 16 8 C -0.12 -1.61 9.15 -39.29 -0.36 -1.97 16 9 C 0.13 1.56 2.47 -69.04 -0.17 1.39 16 10 H 0.09 1.16 7.69 -51.93 -0.40 0.76 16 11 N -0.68 -9.64 4.46 -108.13 -0.48 -10.12 16 12 C 0.07 1.19 4.46 -3.82 -0.02 1.17 16 13 C -0.06 -1.12 0.60 -154.50 -0.09 -1.21 16 14 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 15 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 16 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 17 C -0.51 -13.90 7.65 -34.44 -0.26 -14.17 16 18 H 0.06 1.58 5.68 -52.48 -0.30 1.29 16 19 C 0.05 1.54 5.46 -17.81 -0.10 1.44 16 20 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 21 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 25 C -0.15 -1.59 5.24 -26.70 -0.14 -1.73 16 26 C -0.12 -1.05 5.98 -26.70 -0.16 -1.21 16 27 C -0.07 -0.66 5.67 -28.04 -0.16 -0.81 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 30 H 0.05 0.36 7.67 -51.93 -0.40 -0.03 16 31 H 0.12 1.04 6.33 -52.49 -0.33 0.70 16 32 H 0.12 0.94 8.05 -52.49 -0.42 0.52 16 33 H 0.14 2.18 7.61 -52.49 -0.40 1.78 16 34 H 0.34 4.78 6.63 -39.29 -0.26 4.52 16 35 H 0.07 1.15 7.91 -51.93 -0.41 0.74 16 36 H 0.02 0.42 7.80 -51.93 -0.40 0.01 16 37 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 38 H 0.05 1.14 6.62 -51.92 -0.34 0.79 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.29 6.62 -51.92 -0.34 0.94 16 42 H 0.03 0.55 6.70 -51.93 -0.35 0.21 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 47 H 0.07 0.73 7.92 -51.93 -0.41 0.31 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -30.25 390.05 -10.17 -40.42 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.91 Total: 2.26 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -2.17 Total: -24.72 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.25 Total: -36.41 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.25 -10.17 -40.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348244278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.775 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds