Wall clock time and date at job start Tue Mar 31 2020 11:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 117.00124 * 2 1 4 4 C 1.38765 * 120.16847 * 359.97438 * 3 2 1 5 5 C 1.37833 * 119.70829 * 180.08369 * 4 3 2 6 6 C 1.38956 * 120.62595 * 359.97438 * 5 4 3 7 7 C 1.37715 * 119.77360 * 359.81938 * 6 5 4 8 8 C 1.38416 * 120.17539 * 179.97438 * 3 2 1 9 9 C 1.50641 * 122.57161 * 180.30243 * 7 6 5 10 10 H 1.09006 * 109.24912 * 102.73901 * 9 7 6 11 11 N 1.46898 * 109.25415 * 222.19743 * 9 7 6 12 12 C 1.46901 * 111.00116 * 206.26862 * 11 9 7 13 13 C 1.53002 * 109.47167 * 174.46477 * 12 11 9 14 14 C 1.53003 * 109.46740 * 299.99862 * 13 12 11 15 15 C 1.53001 * 109.46714 * 59.99715 * 13 12 11 16 16 C 1.53000 * 109.47153 * 179.97438 * 13 12 11 17 17 C 1.50692 * 109.46892 * 179.97438 * 16 13 12 18 18 H 1.08004 * 120.00661 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00090 * 179.97438 * 17 16 13 20 20 N 1.31522 * 119.99397 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00367 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47463 * 90.00277 * 21 19 17 23 23 H 1.48498 * 109.47005 * 210.00502 * 21 19 17 24 24 H 1.48500 * 109.46995 * 329.99779 * 21 19 17 25 25 C 1.52725 * 110.59861 * 342.49024 * 9 7 6 26 26 C 1.53341 * 108.38541 * 51.02795 * 25 9 7 27 27 C 1.50660 * 117.68808 * 179.71080 * 6 5 4 28 28 H 1.08998 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47490 * 299.99932 * 1 2 3 30 30 H 1.09000 * 109.46872 * 60.00094 * 1 2 3 31 31 H 1.07995 * 120.14688 * 0.10442 * 4 3 2 32 32 H 1.07998 * 119.68838 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.74744 * 0.05073 * 8 3 2 34 34 H 1.00899 * 110.99931 * 82.31179 * 11 9 7 35 35 H 1.09003 * 109.46946 * 54.46860 * 12 11 9 36 36 H 1.08996 * 109.46988 * 294.46755 * 12 11 9 37 37 H 1.09004 * 109.47272 * 60.00411 * 14 13 12 38 38 H 1.09007 * 109.46380 * 179.97438 * 14 13 12 39 39 H 1.08994 * 109.47251 * 299.99752 * 14 13 12 40 40 H 1.08992 * 109.47194 * 60.00483 * 15 13 12 41 41 H 1.09007 * 109.46470 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.47265 * 299.99645 * 15 13 12 43 43 H 1.09001 * 109.46735 * 300.00009 * 16 13 12 44 44 H 1.09006 * 109.46636 * 59.99980 * 16 13 12 45 45 H 0.97000 * 119.99504 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.67974 * 170.75619 * 25 9 7 47 47 H 1.09001 * 109.68218 * 291.30656 * 25 9 7 48 48 H 1.08993 * 109.68329 * 170.34535 * 26 25 9 49 49 H 1.09005 * 109.73393 * 49.79193 * 26 25 9 50 50 H 1.08994 * 109.25125 * 282.74338 * 27 6 5 51 51 H 1.09000 * 109.24937 * 42.17237 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2937 2.3769 -0.0005 5 6 1.9293 3.5999 -0.0023 6 6 3.3167 3.6767 -0.0030 7 6 4.0655 2.5209 0.0019 8 6 3.4280 1.2876 0.0005 9 6 5.5719 2.5305 0.0081 10 1 5.9285 2.3074 1.0137 11 7 6.0668 1.5049 -0.9198 12 6 7.4028 1.0386 -0.5253 13 6 7.8256 -0.1213 -1.4292 14 6 6.8230 -1.2686 -1.2892 15 6 7.8594 0.3519 -2.8838 16 6 9.2173 -0.6066 -1.0187 17 6 9.6335 -1.7493 -1.9086 18 1 8.9717 -2.0947 -2.6891 19 6 10.8595 -2.3534 -1.7270 20 7 11.6656 -1.9324 -0.7768 21 14 11.3757 -3.7694 -2.8304 22 1 12.0924 -3.2367 -4.0169 23 1 12.2741 -4.6814 -2.0778 24 1 10.1711 -4.5161 -3.2737 25 6 6.1023 3.8967 -0.4218 26 6 5.4053 4.9727 0.4195 27 6 3.9421 5.0473 -0.0116 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2149 2.3264 0.0007 32 1 1.3435 4.5072 -0.0023 33 1 4.0150 0.3810 0.0001 34 1 6.0688 1.8468 -1.8691 35 1 7.3786 0.7014 0.5110 36 1 8.1169 1.8559 -0.6250 37 1 5.8317 -0.9226 -1.5819 38 1 7.1241 -2.0947 -1.9335 39 1 6.7989 -1.6056 -0.2529 40 1 8.5736 1.1692 -2.9835 41 1 8.1611 -0.4743 -3.5276 42 1 6.8680 0.6979 -3.1764 43 1 9.9313 0.2110 -1.1188 44 1 9.1936 -0.9435 0.0177 45 1 12.5283 -2.3571 -0.6493 46 1 7.1787 3.9412 -0.2563 47 1 5.8857 4.0589 -1.4777 48 1 5.8864 5.9367 0.2542 49 1 5.4639 4.7094 1.4756 50 1 3.8846 5.4622 -1.0179 51 1 3.3975 5.6951 0.6753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348244278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:12 Heat of formation + Delta-G solvation = -55.258778 kcal Electronic energy + Delta-G solvation = -27192.874884 eV Core-core repulsion = 23669.392058 eV Total energy + Delta-G solvation = -3523.482826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41022 -39.86303 -38.77547 -36.61302 -35.15351 -34.18084 -31.98078 -30.59049 -29.57975 -28.71249 -27.88546 -27.56223 -26.51705 -24.68358 -23.82862 -23.28357 -22.52585 -20.48293 -19.58281 -18.55647 -18.31510 -17.28141 -16.76314 -16.56548 -16.46474 -16.39467 -15.83281 -15.71392 -15.15611 -14.96517 -14.53525 -14.41391 -14.33693 -14.20329 -13.88501 -13.75404 -13.61354 -13.35635 -13.28710 -12.92201 -12.77862 -12.70165 -12.67934 -12.49621 -12.23766 -12.17921 -12.03173 -11.91918 -11.88138 -11.62822 -11.50718 -11.34647 -11.25778 -10.84586 -10.70211 -10.49685 -9.67564 -9.20275 -8.88787 -8.13521 -6.20182 0.44624 0.56145 1.40466 1.41239 1.51968 2.44014 2.47437 2.81410 3.20318 3.29487 3.74145 3.87870 3.99530 4.03841 4.14985 4.18740 4.25591 4.26021 4.34921 4.39989 4.41879 4.44798 4.52463 4.68965 4.70833 4.73139 4.77062 4.81969 4.84016 4.97757 4.98068 5.06276 5.09463 5.10947 5.19368 5.20957 5.22779 5.25222 5.40463 5.50144 5.52639 5.54614 5.57096 5.59253 5.67484 5.78813 5.88932 5.91325 5.94214 6.16754 6.38814 6.55441 6.58511 6.94851 7.46915 8.98851 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.003061 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.254252 B = 9145.426360 C =10530.552045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.344 6.344 3 C 0.098 3.902 4 C -0.206 4.206 5 C -0.089 4.089 6 C -0.117 4.117 7 C -0.038 4.038 8 C -0.142 4.142 9 C 0.128 3.872 10 H 0.076 0.924 11 N -0.675 5.675 12 C 0.086 3.914 13 C -0.053 4.053 14 C -0.105 4.105 15 C -0.119 4.119 16 C 0.042 3.958 17 C -0.514 4.514 18 H 0.064 0.936 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.955 3.045 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.143 4.143 26 C -0.113 4.113 27 C -0.071 4.071 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.116 0.884 34 H 0.345 0.655 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.027 0.973 40 H 0.038 0.962 41 H 0.044 0.956 42 H 0.064 0.936 43 H -0.014 1.014 44 H -0.018 1.018 45 H 0.260 0.740 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.082 0.918 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.676 15.305 1.403 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.258 6.258 3 C 0.054 3.946 4 C -0.224 4.224 5 C -0.107 4.107 6 C -0.118 4.118 7 C -0.039 4.039 8 C -0.161 4.161 9 C 0.018 3.982 10 H 0.094 0.906 11 N -0.306 5.306 12 C -0.043 4.043 13 C -0.053 4.053 14 C -0.162 4.162 15 C -0.177 4.177 16 C 0.004 3.996 17 C -0.552 4.552 18 H 0.082 0.918 19 C -0.201 4.201 20 N -0.579 5.579 21 Si 0.781 3.219 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.182 4.182 26 C -0.151 4.151 27 C -0.107 4.107 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.134 0.866 34 H 0.165 0.835 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.004 0.996 44 H 0.001 0.999 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.765 14.540 1.785 27.917 hybrid contribution 1.306 -0.411 -0.434 1.437 sum -22.459 14.128 1.350 26.567 Atomic orbital electron populations 1.23280 0.76726 1.05195 1.02144 1.86068 1.23304 1.27416 1.89048 1.19159 0.92463 0.84878 0.98136 1.21399 1.00836 0.91906 1.08291 1.21199 0.93682 0.97807 0.97964 1.19829 0.93635 0.95094 1.03197 1.19368 0.94563 0.91627 0.98311 1.20473 0.91418 0.98947 1.05242 1.20331 0.90574 0.90463 0.96813 0.90639 1.60491 1.24776 1.39207 1.06083 1.21811 0.88450 0.95712 0.98309 1.20472 0.95117 0.94480 0.95255 1.21481 0.98090 0.97092 0.99566 1.21651 1.00220 1.00150 0.95656 1.18989 0.91636 0.94466 0.94502 1.21621 1.01305 1.16180 1.16079 0.91773 1.25910 0.97106 1.00091 0.96967 1.70112 1.10219 1.43631 1.33950 0.85588 0.78313 0.79256 0.78774 1.19964 1.21222 1.18872 1.22227 1.00112 0.95023 1.00850 1.21492 0.95238 0.98915 0.99446 1.20436 0.95234 0.92307 1.02772 0.86981 0.91661 0.91737 0.83511 0.83270 0.86558 0.83503 0.92815 0.95836 0.91760 0.94484 0.95355 0.94243 0.93689 0.91716 0.99593 0.99917 0.93175 0.91958 0.91109 0.89872 0.91972 0.89991 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.82 113.37 1.11 1.41 16 2 O -0.34 -8.58 10.50 -92.48 -0.97 -9.55 16 3 C 0.10 2.48 6.68 22.44 0.15 2.63 16 4 C -0.21 -3.96 9.04 22.30 0.20 -3.76 16 5 C -0.09 -1.54 9.60 22.35 0.21 -1.33 16 6 C -0.12 -2.32 5.74 -19.83 -0.11 -2.43 16 7 C -0.04 -0.94 5.55 -19.86 -0.11 -1.05 16 8 C -0.14 -4.00 9.15 22.46 0.21 -3.79 16 9 C 0.13 3.19 2.47 44.06 0.11 3.29 16 10 H 0.08 2.05 7.69 -2.38 -0.02 2.03 16 11 N -0.67 -19.29 4.46 -496.02 -2.21 -21.50 16 12 C 0.09 3.00 4.46 86.30 0.39 3.38 16 13 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 14 C -0.10 -4.22 8.06 71.98 0.58 -3.64 16 15 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 16 C 0.04 2.20 4.04 29.85 0.12 2.32 16 17 C -0.51 -28.99 7.65 25.60 0.20 -28.80 16 18 H 0.06 3.49 5.68 -2.91 -0.02 3.48 16 19 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 20 N -0.94 -58.07 13.29 21.45 0.28 -57.78 16 21 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 25 C -0.14 -2.91 5.24 30.62 0.16 -2.75 16 26 C -0.11 -1.79 5.98 30.62 0.18 -1.61 16 27 C -0.07 -1.02 5.67 29.74 0.17 -0.85 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.06 0.74 7.67 -2.39 -0.02 0.73 16 30 H 0.06 0.75 7.67 -2.39 -0.02 0.73 16 31 H 0.15 1.99 6.33 -2.91 -0.02 1.97 16 32 H 0.15 1.66 8.05 -2.91 -0.02 1.64 16 33 H 0.12 3.78 7.61 -2.91 -0.02 3.76 16 34 H 0.34 9.35 6.63 -89.69 -0.59 8.76 16 35 H 0.05 1.98 7.91 -2.39 -0.02 1.97 16 36 H 0.02 0.82 7.80 -2.39 -0.02 0.80 16 37 H 0.06 2.31 7.60 -2.38 -0.02 2.29 16 38 H 0.04 1.58 6.62 -2.38 -0.02 1.57 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 1.82 6.62 -2.38 -0.02 1.80 16 42 H 0.06 2.00 6.70 -2.39 -0.02 1.98 16 43 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 44 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 45 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 46 H 0.06 1.35 7.83 -2.38 -0.02 1.33 16 47 H 0.07 1.40 7.92 -2.39 -0.02 1.38 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 50 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 Total: -1.00 -67.62 390.05 3.99 -63.63 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.30 Total: 20.74 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 4.56 Total: -42.78 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -1.93 Total: -79.28 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.97 Total: -9.55 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.62 3.99 -63.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348244278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.373 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds