Wall clock time and date at job start Tue Mar 31 2020 11:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46997 * 2 1 4 4 C 1.52999 * 109.47097 * 64.99858 * 3 2 1 5 5 C 1.52998 * 109.46933 * 186.31118 * 4 3 2 6 6 C 1.53004 * 109.46949 * 184.99878 * 3 2 1 7 7 N 1.46900 * 109.47034 * 62.19101 * 6 3 2 8 8 C 1.46901 * 110.99652 * 196.01163 * 7 6 3 9 9 C 1.50701 * 109.47216 * 71.20595 * 8 7 6 10 10 H 1.07999 * 119.99671 * 245.41703 * 9 8 7 11 11 C 1.37874 * 120.00062 * 65.40872 * 9 8 7 12 12 N 1.31510 * 120.00271 * 7.64097 * 11 9 8 13 13 Si 1.86802 * 119.99671 * 187.63859 * 11 9 8 14 14 H 1.48505 * 109.47278 * 90.00402 * 13 11 9 15 15 H 1.48497 * 109.46867 * 210.00181 * 13 11 9 16 16 H 1.48497 * 109.47395 * 330.00082 * 13 11 9 17 17 C 1.46904 * 110.99871 * 72.06299 * 7 6 3 18 18 C 1.50699 * 109.47054 * 190.00159 * 17 7 6 19 19 C 1.38289 * 120.11613 * 269.72114 * 18 17 7 20 20 C 1.37921 * 120.35569 * 179.97438 * 19 18 17 21 21 C 1.39294 * 120.23879 * 0.54712 * 20 19 18 22 22 C 1.38875 * 118.87361 * 359.41611 * 21 20 19 23 23 C 1.37746 * 120.78553 * 0.41512 * 22 21 20 24 24 C 1.51645 * 107.03733 * 180.68144 * 22 21 20 25 25 C 1.54701 * 101.92164 * 15.46993 * 24 22 21 26 26 O 1.36130 * 129.88338 * 179.09340 * 21 20 19 27 27 H 1.08996 * 109.46952 * 300.00149 * 1 2 3 28 28 H 1.09003 * 109.46919 * 60.00303 * 1 2 3 29 29 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47588 * 239.99786 * 2 1 3 31 31 H 1.09003 * 109.46919 * 119.99697 * 2 1 3 32 32 H 1.09002 * 109.47166 * 304.99725 * 3 2 1 33 33 H 1.09001 * 109.47239 * 306.30877 * 4 3 2 34 34 H 1.08995 * 109.47032 * 66.31303 * 4 3 2 35 35 H 1.08998 * 109.47377 * 58.50329 * 5 4 3 36 36 H 1.09005 * 109.47185 * 178.50230 * 5 4 3 37 37 H 1.08998 * 109.47101 * 298.50159 * 5 4 3 38 38 H 1.09000 * 109.47213 * 302.18962 * 6 3 2 39 39 H 1.09004 * 109.46981 * 182.19169 * 6 3 2 40 40 H 1.08994 * 109.47233 * 311.19997 * 8 7 6 41 41 H 1.08998 * 109.46814 * 191.19935 * 8 7 6 42 42 H 0.97001 * 120.00002 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46813 * 309.99656 * 17 7 6 44 44 H 1.08998 * 109.47181 * 69.99583 * 17 7 6 45 45 H 1.08009 * 119.82193 * 0.17205 * 19 18 17 46 46 H 1.08002 * 119.88410 * 180.27473 * 20 19 18 47 47 H 1.08006 * 120.00735 * 179.77392 * 23 22 21 48 48 H 1.08996 * 110.94398 * 133.62882 * 24 22 21 49 49 H 1.09004 * 110.93913 * 257.27933 * 24 22 21 50 50 H 1.09000 * 110.74862 * 93.01818 * 25 24 22 51 51 H 1.09000 * 110.75226 * 216.18601 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0058 3.6096 1.2429 6 6 3.5649 1.4444 -0.1257 7 7 3.9515 0.8347 -1.4051 8 6 5.3749 0.4717 -1.4064 9 6 5.5934 -0.7078 -0.4942 10 1 6.1872 -0.5955 0.4009 11 6 5.0351 -1.9303 -0.8023 12 7 4.4404 -2.1082 -1.9617 13 14 5.1236 -3.3338 0.4272 14 1 3.9322 -3.2921 1.3127 15 1 5.1545 -4.6280 -0.3004 16 1 6.3544 -3.1973 1.2467 17 6 3.6342 1.7250 -2.5297 18 6 3.8126 0.9789 -3.8268 19 6 5.0359 0.9910 -4.4716 20 6 5.2048 0.3095 -5.6587 21 6 4.1403 -0.3882 -6.2247 22 6 2.9170 -0.3938 -5.5673 23 6 2.7515 0.2847 -4.3800 24 6 1.9693 -1.2358 -6.3995 25 6 2.9461 -1.9844 -7.3368 26 8 4.0822 -1.1044 -7.3809 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6054 1.9816 -0.8419 33 1 0.5594 2.0269 1.4516 34 1 2.1586 1.6572 2.1402 35 1 1.5032 4.0732 0.3941 36 1 1.6934 4.1025 2.1636 37 1 3.0848 3.7097 1.1253 38 1 3.9978 0.8723 0.6949 39 1 3.9314 2.4702 -0.0866 40 1 5.9658 1.3174 -1.0547 41 1 5.6821 0.2098 -2.4188 42 1 4.0473 -2.9681 -2.1782 43 1 2.6017 2.0640 -2.4446 44 1 4.3021 2.5862 -2.5109 45 1 5.8644 1.5345 -4.0417 46 1 6.1647 0.3204 -6.1536 47 1 1.7936 0.2749 -3.8813 48 1 1.4175 -1.9360 -5.7724 49 1 1.2870 -0.6056 -6.9700 50 1 3.2223 -2.9506 -6.9147 51 1 2.5112 -2.1081 -8.3286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353424362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:37 Heat of formation + Delta-G solvation = -17.265640 kcal Electronic energy + Delta-G solvation = -28296.868851 eV Core-core repulsion = 24775.033531 eV Total energy + Delta-G solvation = -3521.835320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54550 -38.14580 -36.84702 -34.72764 -32.29515 -32.18286 -31.29174 -30.18804 -28.77455 -27.84064 -26.60800 -24.52891 -23.11185 -22.93781 -22.02940 -21.50230 -20.81861 -20.00395 -18.81731 -16.91626 -16.32942 -16.04320 -15.78522 -14.90721 -14.65796 -14.54691 -14.08736 -13.96094 -13.56985 -13.49422 -13.38833 -13.07878 -12.82445 -12.69352 -12.45428 -12.38192 -12.14200 -11.92540 -11.62485 -11.47160 -11.45570 -11.34654 -11.11725 -10.91636 -10.71964 -10.66088 -10.57499 -10.43635 -10.30247 -10.10346 -9.89818 -9.70007 -9.55967 -9.35920 -9.03046 -8.28361 -8.13159 -7.40023 -6.74748 -5.82504 -3.89874 1.96576 2.07950 3.36655 3.43770 3.46739 3.68751 4.32672 4.55305 4.80255 4.96030 5.12768 5.24728 5.30901 5.36314 5.42474 5.47165 5.56686 5.65674 5.69694 5.71056 5.78545 5.81779 5.90182 5.93562 6.01265 6.02877 6.10602 6.13554 6.17584 6.21664 6.25954 6.28237 6.33004 6.40051 6.44011 6.54942 6.70844 6.72897 6.80029 6.83380 6.91928 6.99497 7.09680 7.15140 7.20080 7.36011 7.37821 7.52763 7.78445 7.95338 8.28102 8.57653 8.74210 9.17108 9.77189 11.22882 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.005218 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.718491 B = 5365.052490 C = 6385.433202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.077 4.077 4 C -0.121 4.121 5 C -0.151 4.151 6 C 0.070 3.930 7 N -0.497 5.497 8 C 0.185 3.815 9 C -0.532 4.532 10 H 0.046 0.954 11 C 0.096 3.904 12 N -0.839 5.839 13 Si 0.868 3.132 14 H -0.281 1.281 15 H -0.290 1.290 16 H -0.278 1.278 17 C 0.093 3.907 18 C -0.061 4.061 19 C -0.070 4.070 20 C -0.136 4.136 21 C 0.089 3.911 22 C -0.174 4.174 23 C -0.036 4.036 24 C -0.106 4.106 25 C 0.054 3.946 26 O -0.314 6.314 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.009 0.991 40 H -0.029 1.029 41 H 0.049 0.951 42 H 0.253 0.747 43 H 0.062 0.938 44 H 0.018 0.982 45 H 0.120 0.880 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.421 6.013 -4.556 10.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.096 4.096 4 C -0.159 4.159 5 C -0.208 4.208 6 C -0.058 4.058 7 N -0.221 5.221 8 C 0.061 3.939 9 C -0.571 4.571 10 H 0.064 0.936 11 C -0.111 4.111 12 N -0.474 5.474 13 Si 0.697 3.303 14 H -0.207 1.207 15 H -0.216 1.216 16 H -0.203 1.203 17 C -0.035 4.035 18 C -0.062 4.062 19 C -0.089 4.089 20 C -0.154 4.154 21 C 0.044 3.956 22 C -0.175 4.175 23 C -0.055 4.055 24 C -0.143 4.143 25 C -0.021 4.021 26 O -0.229 6.229 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.027 0.973 40 H -0.011 1.011 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.138 0.862 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.105 0.895 49 H 0.099 0.901 50 H 0.091 0.909 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.630 5.448 -4.938 10.597 hybrid contribution 0.284 -0.429 1.012 1.135 sum -7.346 5.019 -3.926 9.725 Atomic orbital electron populations 1.21857 0.97971 1.00435 1.00464 1.21423 0.93006 0.96382 1.03935 1.21165 0.96558 0.96089 0.95810 1.21629 1.00534 0.95108 0.98651 1.21810 1.01720 0.96713 1.00570 1.21970 0.93644 0.95447 0.94787 1.62519 1.23568 1.37450 0.98564 1.19843 0.82520 0.92772 0.98740 1.20842 1.33269 0.94052 1.08949 0.93584 1.24787 0.94665 0.97436 0.94219 1.70039 1.34936 1.22817 1.19596 0.87015 0.78262 0.82699 0.82366 1.20746 1.21615 1.20341 1.20978 0.99438 0.92827 0.90272 1.19456 0.92912 0.98559 0.95273 1.20619 0.96808 0.98177 0.93292 1.20005 0.96421 1.02082 0.96936 1.19373 0.94577 0.95197 0.86417 1.20514 0.94381 1.04312 0.98245 1.19885 0.98828 0.94571 0.92186 1.21686 0.97543 0.98134 0.96947 1.23704 0.84611 0.93335 1.00485 1.86732 1.48801 1.52653 1.34733 0.93672 0.93596 0.93733 0.88998 0.93031 0.92424 0.92411 0.92294 0.93265 0.93658 0.92529 0.90372 0.97278 1.01058 0.93273 0.93703 0.91919 0.96425 0.86172 0.86569 0.86794 0.89506 0.90121 0.90910 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.68 37.16 0.36 -1.86 16 2 C -0.11 -1.98 5.33 -26.73 -0.14 -2.12 16 3 C -0.08 -1.28 1.84 -90.62 -0.17 -1.44 16 4 C -0.12 -1.71 5.28 -26.73 -0.14 -1.85 16 5 C -0.15 -1.91 9.66 37.16 0.36 -1.55 16 6 C 0.07 1.34 4.06 -3.82 -0.02 1.33 16 7 N -0.50 -10.58 3.47 -237.51 -0.82 -11.40 16 8 C 0.19 4.51 4.64 -4.98 -0.02 4.49 16 9 C -0.53 -14.28 8.29 -34.44 -0.29 -14.56 16 10 H 0.05 1.26 7.83 -52.49 -0.41 0.85 16 11 C 0.10 2.58 5.38 -17.82 -0.10 2.48 16 12 N -0.84 -22.92 13.17 55.43 0.73 -22.19 16 13 Si 0.87 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.09 1.74 4.97 -4.97 -0.02 1.72 16 18 C -0.06 -1.18 4.93 -104.57 -0.52 -1.70 16 19 C -0.07 -1.33 7.84 -39.68 -0.31 -1.64 16 20 C -0.14 -2.52 10.06 -39.31 -0.40 -2.91 16 21 C 0.09 1.66 7.04 -38.95 -0.27 1.38 16 22 C -0.17 -3.11 6.27 -104.10 -0.65 -3.76 16 23 C -0.04 -0.67 9.70 -39.72 -0.39 -1.06 16 24 C -0.11 -1.47 7.12 -26.52 -0.19 -1.66 16 25 C 0.05 0.72 8.01 38.05 0.30 1.03 16 26 O -0.31 -5.44 11.10 -20.15 -0.22 -5.66 16 27 H 0.04 0.60 6.44 -51.93 -0.33 0.27 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.98 7.52 -51.93 -0.39 1.59 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.94 6.53 -51.93 -0.34 0.60 16 33 H 0.06 0.76 6.29 -51.93 -0.33 0.43 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.75 6.63 -51.93 -0.34 0.41 16 38 H 0.08 1.70 7.14 -51.93 -0.37 1.33 16 39 H 0.01 0.17 6.45 -51.93 -0.34 -0.16 16 40 H -0.03 -0.69 8.06 -51.93 -0.42 -1.11 16 41 H 0.05 1.26 5.16 -51.93 -0.27 1.00 16 42 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.06 1.09 6.32 -51.93 -0.33 0.76 16 44 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 45 H 0.12 2.14 7.76 -52.48 -0.41 1.73 16 46 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 47 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -28.32 394.74 -10.89 -39.20 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.90 Total: 1.78 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.59 Total: -23.69 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: -0.09 Total: -33.59 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.22 Total: -5.66 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.32 -10.89 -39.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353424362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.937 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds