Wall clock time and date at job start Tue Mar 31 2020 11:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46997 * 2 1 4 4 C 1.52999 * 109.47097 * 64.99858 * 3 2 1 5 5 C 1.52998 * 109.46933 * 186.31118 * 4 3 2 6 6 C 1.53004 * 109.46949 * 184.99878 * 3 2 1 7 7 N 1.46900 * 109.47034 * 62.19101 * 6 3 2 8 8 C 1.46901 * 110.99652 * 196.01163 * 7 6 3 9 9 C 1.50701 * 109.47216 * 71.20595 * 8 7 6 10 10 H 1.07999 * 119.99671 * 245.41703 * 9 8 7 11 11 C 1.37874 * 120.00062 * 65.40872 * 9 8 7 12 12 N 1.31510 * 120.00271 * 7.64097 * 11 9 8 13 13 Si 1.86802 * 119.99671 * 187.63859 * 11 9 8 14 14 H 1.48505 * 109.47278 * 90.00402 * 13 11 9 15 15 H 1.48497 * 109.46867 * 210.00181 * 13 11 9 16 16 H 1.48497 * 109.47395 * 330.00082 * 13 11 9 17 17 C 1.46904 * 110.99871 * 72.06299 * 7 6 3 18 18 C 1.50699 * 109.47054 * 190.00159 * 17 7 6 19 19 C 1.38289 * 120.11613 * 269.72114 * 18 17 7 20 20 C 1.37921 * 120.35569 * 179.97438 * 19 18 17 21 21 C 1.39294 * 120.23879 * 0.54712 * 20 19 18 22 22 C 1.38875 * 118.87361 * 359.41611 * 21 20 19 23 23 C 1.37746 * 120.78553 * 0.41512 * 22 21 20 24 24 C 1.51645 * 107.03733 * 180.68144 * 22 21 20 25 25 C 1.54701 * 101.92164 * 15.46993 * 24 22 21 26 26 O 1.36130 * 129.88338 * 179.09340 * 21 20 19 27 27 H 1.08996 * 109.46952 * 300.00149 * 1 2 3 28 28 H 1.09003 * 109.46919 * 60.00303 * 1 2 3 29 29 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47588 * 239.99786 * 2 1 3 31 31 H 1.09003 * 109.46919 * 119.99697 * 2 1 3 32 32 H 1.09002 * 109.47166 * 304.99725 * 3 2 1 33 33 H 1.09001 * 109.47239 * 306.30877 * 4 3 2 34 34 H 1.08995 * 109.47032 * 66.31303 * 4 3 2 35 35 H 1.08998 * 109.47377 * 58.50329 * 5 4 3 36 36 H 1.09005 * 109.47185 * 178.50230 * 5 4 3 37 37 H 1.08998 * 109.47101 * 298.50159 * 5 4 3 38 38 H 1.09000 * 109.47213 * 302.18962 * 6 3 2 39 39 H 1.09004 * 109.46981 * 182.19169 * 6 3 2 40 40 H 1.08994 * 109.47233 * 311.19997 * 8 7 6 41 41 H 1.08998 * 109.46814 * 191.19935 * 8 7 6 42 42 H 0.97001 * 120.00002 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46813 * 309.99656 * 17 7 6 44 44 H 1.08998 * 109.47181 * 69.99583 * 17 7 6 45 45 H 1.08009 * 119.82193 * 0.17205 * 19 18 17 46 46 H 1.08002 * 119.88410 * 180.27473 * 20 19 18 47 47 H 1.08006 * 120.00735 * 179.77392 * 23 22 21 48 48 H 1.08996 * 110.94398 * 133.62882 * 24 22 21 49 49 H 1.09004 * 110.93913 * 257.27933 * 24 22 21 50 50 H 1.09000 * 110.74862 * 93.01818 * 25 24 22 51 51 H 1.09000 * 110.75226 * 216.18601 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0058 3.6096 1.2429 6 6 3.5649 1.4444 -0.1257 7 7 3.9515 0.8347 -1.4051 8 6 5.3749 0.4717 -1.4064 9 6 5.5934 -0.7078 -0.4942 10 1 6.1872 -0.5955 0.4009 11 6 5.0351 -1.9303 -0.8023 12 7 4.4404 -2.1082 -1.9617 13 14 5.1236 -3.3338 0.4272 14 1 3.9322 -3.2921 1.3127 15 1 5.1545 -4.6280 -0.3004 16 1 6.3544 -3.1973 1.2467 17 6 3.6342 1.7250 -2.5297 18 6 3.8126 0.9789 -3.8268 19 6 5.0359 0.9910 -4.4716 20 6 5.2048 0.3095 -5.6587 21 6 4.1403 -0.3882 -6.2247 22 6 2.9170 -0.3938 -5.5673 23 6 2.7515 0.2847 -4.3800 24 6 1.9693 -1.2358 -6.3995 25 6 2.9461 -1.9844 -7.3368 26 8 4.0822 -1.1044 -7.3809 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6054 1.9816 -0.8419 33 1 0.5594 2.0269 1.4516 34 1 2.1586 1.6572 2.1402 35 1 1.5032 4.0732 0.3941 36 1 1.6934 4.1025 2.1636 37 1 3.0848 3.7097 1.1253 38 1 3.9978 0.8723 0.6949 39 1 3.9314 2.4702 -0.0866 40 1 5.9658 1.3174 -1.0547 41 1 5.6821 0.2098 -2.4188 42 1 4.0473 -2.9681 -2.1782 43 1 2.6017 2.0640 -2.4446 44 1 4.3021 2.5862 -2.5109 45 1 5.8644 1.5345 -4.0417 46 1 6.1647 0.3204 -6.1536 47 1 1.7936 0.2749 -3.8813 48 1 1.4175 -1.9360 -5.7724 49 1 1.2870 -0.6056 -6.9700 50 1 3.2223 -2.9506 -6.9147 51 1 2.5112 -2.1081 -8.3286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353424362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:36 Heat of formation + Delta-G solvation = -30.141188 kcal Electronic energy + Delta-G solvation = -28297.427176 eV Core-core repulsion = 24775.033531 eV Total energy + Delta-G solvation = -3522.393646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85166 -39.64533 -38.20749 -36.28704 -34.25586 -33.46655 -32.49198 -31.67862 -30.06943 -29.53055 -28.14870 -26.01415 -24.78806 -24.18847 -23.30143 -22.88792 -22.37766 -21.47895 -20.24442 -18.29100 -18.15460 -17.46581 -17.00684 -16.59699 -16.36611 -16.11806 -15.54386 -15.31507 -14.93541 -14.89053 -14.73989 -14.49474 -14.20253 -14.10115 -13.97498 -13.74763 -13.51330 -13.24943 -13.20539 -12.95713 -12.83494 -12.66876 -12.54886 -12.54186 -12.40507 -12.14168 -11.98126 -11.81354 -11.62683 -11.55281 -11.46271 -11.24121 -11.10923 -10.94521 -10.87237 -10.33785 -9.57897 -8.82242 -8.43359 -7.90067 -6.02694 0.54562 0.63139 1.40215 1.43909 1.49257 2.43505 2.51481 2.90702 3.30937 3.61912 3.79637 3.83072 4.01539 4.10890 4.13646 4.19734 4.22337 4.34610 4.38431 4.49336 4.53471 4.56261 4.60851 4.70326 4.71551 4.77483 4.78476 4.81392 4.90169 4.93363 4.98395 5.02164 5.06739 5.10826 5.19314 5.19994 5.25456 5.34183 5.37198 5.45389 5.51467 5.54061 5.56952 5.58755 5.74269 5.81407 5.82600 5.87257 5.91014 6.30389 6.41650 6.71462 6.96646 7.15290 7.65733 9.12471 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.005218 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.718491 B = 5365.052490 C = 6385.433202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.068 4.068 4 C -0.116 4.116 5 C -0.147 4.147 6 C 0.074 3.926 7 N -0.505 5.505 8 C 0.195 3.805 9 C -0.550 4.550 10 H 0.032 0.968 11 C 0.064 3.936 12 N -0.853 5.853 13 Si 0.918 3.082 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.279 1.279 17 C 0.097 3.903 18 C -0.076 4.076 19 C -0.083 4.083 20 C -0.150 4.150 21 C 0.074 3.926 22 C -0.182 4.182 23 C -0.048 4.048 24 C -0.102 4.102 25 C 0.049 3.951 26 O -0.327 6.327 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.019 0.981 40 H -0.035 1.035 41 H 0.034 0.966 42 H 0.250 0.750 43 H 0.080 0.920 44 H 0.023 0.977 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.120 0.880 48 H 0.095 0.905 49 H 0.106 0.894 50 H 0.071 0.929 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 6.348 -4.863 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.086 4.086 4 C -0.154 4.154 5 C -0.205 4.205 6 C -0.054 4.054 7 N -0.229 5.229 8 C 0.070 3.930 9 C -0.589 4.589 10 H 0.050 0.950 11 C -0.142 4.142 12 N -0.488 5.488 13 Si 0.746 3.254 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.030 4.030 18 C -0.077 4.077 19 C -0.102 4.102 20 C -0.168 4.168 21 C 0.030 3.970 22 C -0.183 4.183 23 C -0.066 4.066 24 C -0.138 4.138 25 C -0.026 4.026 26 O -0.242 6.242 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.037 0.963 40 H -0.017 1.017 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.041 0.959 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.138 0.862 48 H 0.113 0.887 49 H 0.124 0.876 50 H 0.089 0.911 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.840 5.786 -5.241 12.560 hybrid contribution 1.000 -0.536 1.069 1.559 sum -8.840 5.249 -4.172 11.095 Atomic orbital electron populations 1.21771 0.95096 1.01018 1.01964 1.21292 0.95482 0.96583 1.00870 1.21085 0.94150 0.95645 0.97753 1.21585 1.01493 0.95800 0.96544 1.21774 1.01034 0.95643 1.02009 1.21949 0.95696 0.95032 0.92743 1.62266 1.21316 1.39164 1.00180 1.19598 0.84416 0.91870 0.97155 1.21011 1.33566 0.95447 1.08868 0.94967 1.25217 0.94544 0.98969 0.95426 1.70139 1.35326 1.22887 1.20403 0.86221 0.78019 0.80482 0.80675 1.20607 1.21385 1.20407 1.20980 1.00429 0.92400 0.89191 1.19588 0.93365 0.99227 0.95509 1.20720 0.96975 0.98754 0.93746 1.20233 0.97304 1.02195 0.97094 1.19601 0.94919 0.95459 0.87054 1.20971 0.95374 1.03944 0.98001 1.20038 0.98954 0.94883 0.92767 1.21795 0.97317 0.98033 0.96691 1.24036 0.83396 0.92410 1.02717 1.86713 1.50473 1.53031 1.34016 0.91675 0.92469 0.93718 0.92897 0.95248 0.91474 0.90544 0.93238 0.92326 0.91793 0.93751 0.93459 0.96346 1.01710 0.94829 0.94058 0.90179 0.95925 0.86041 0.85439 0.86180 0.88694 0.87565 0.91088 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.68 71.98 0.70 -3.19 16 2 C -0.10 -3.72 5.33 30.60 0.16 -3.56 16 3 C -0.07 -2.16 1.84 -10.79 -0.02 -2.18 16 4 C -0.12 -3.05 5.28 30.59 0.16 -2.89 16 5 C -0.15 -3.36 9.66 71.98 0.70 -2.67 16 6 C 0.07 2.88 4.06 86.30 0.35 3.23 16 7 N -0.51 -21.91 3.47 -905.35 -3.14 -25.06 16 8 C 0.19 9.80 4.64 85.56 0.40 10.20 16 9 C -0.55 -30.43 8.29 25.60 0.21 -30.22 16 10 H 0.03 1.82 7.83 -2.91 -0.02 1.80 16 11 C 0.06 3.50 5.38 84.65 0.46 3.96 16 12 N -0.85 -47.39 13.17 21.45 0.28 -47.10 16 13 Si 0.92 43.92 29.54 68.60 2.03 45.94 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 17 C 0.10 3.66 4.97 85.56 0.43 4.09 16 18 C -0.08 -2.96 4.93 -19.83 -0.10 -3.06 16 19 C -0.08 -3.23 7.84 22.21 0.17 -3.06 16 20 C -0.15 -5.64 10.06 22.45 0.23 -5.42 16 21 C 0.07 2.76 7.04 22.68 0.16 2.92 16 22 C -0.18 -6.37 6.27 -19.53 -0.12 -6.49 16 23 C -0.05 -1.77 9.70 22.18 0.22 -1.56 16 24 C -0.10 -2.59 7.12 30.73 0.22 -2.37 16 25 C 0.05 1.20 8.01 72.56 0.58 1.78 16 26 O -0.33 -10.93 11.10 -95.03 -1.06 -11.99 16 27 H 0.06 1.53 6.44 -2.39 -0.02 1.52 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 2.30 7.52 -2.39 -0.02 2.29 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 2.04 6.53 -2.39 -0.02 2.03 16 33 H 0.08 1.74 6.29 -2.39 -0.02 1.73 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.04 1.11 6.63 -2.39 -0.02 1.10 16 38 H 0.05 2.12 7.14 -2.39 -0.02 2.10 16 39 H 0.02 0.68 6.45 -2.39 -0.02 0.67 16 40 H -0.04 -1.75 8.06 -2.39 -0.02 -1.77 16 41 H 0.03 1.79 5.16 -2.39 -0.01 1.78 16 42 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 43 H 0.08 2.69 6.32 -2.38 -0.02 2.68 16 44 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 45 H 0.12 4.51 7.76 -2.91 -0.02 4.48 16 46 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 47 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 48 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 50 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -62.15 394.74 3.89 -58.26 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.89 Total: 20.45 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 4.89 Total: -40.50 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -2.86 Total: -72.16 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.06 Total: -11.99 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -62.15 3.89 -58.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353424362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.117 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds