Wall clock time and date at job start Tue Mar 31 2020 11:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.46910 * 2 1 4 4 C 1.52999 * 109.46797 * 120.00231 * 2 1 3 5 5 C 1.52999 * 109.46798 * 175.00105 * 4 2 1 6 6 H 1.09001 * 109.48127 * 55.02407 * 5 4 2 7 7 O 1.42901 * 109.48172 * 294.99735 * 5 4 2 8 8 C 1.42907 * 114.09901 * 178.85972 * 7 5 4 9 9 C 1.53089 * 109.41611 * 61.15856 * 8 7 5 10 10 C 1.53183 * 109.16321 * 302.39588 * 9 8 7 11 11 C 1.53113 * 109.48386 * 174.96677 * 5 4 2 12 12 H 1.08999 * 109.44816 * 57.63834 * 11 5 4 13 13 N 1.46903 * 109.59582 * 297.45114 * 11 5 4 14 14 C 1.46895 * 110.99771 * 155.27515 * 13 11 5 15 15 C 1.50707 * 109.46993 * 180.02562 * 14 13 11 16 16 C 1.38638 * 119.74625 * 269.72411 * 15 14 13 17 17 C 1.37614 * 120.24445 * 179.76336 * 16 15 14 18 18 C 1.40705 * 119.74901 * 0.48719 * 17 16 15 19 19 C 1.41396 * 120.24830 * 179.79160 * 18 17 16 20 20 H 1.08003 * 119.99944 * 24.36391 * 19 18 17 21 21 C 1.39946 * 120.00127 * 204.36989 * 19 18 17 22 22 N 1.30827 * 119.99984 * 17.87069 * 21 19 18 23 23 Si 1.86804 * 120.00143 * 197.86660 * 21 19 18 24 24 H 1.48503 * 109.46694 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46696 * 120.00019 * 23 21 19 26 26 H 1.48497 * 109.47205 * 240.00028 * 23 21 19 27 27 C 1.40718 * 119.51112 * 359.76544 * 18 17 16 28 28 C 1.37622 * 119.74337 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47152 * 299.99940 * 1 2 3 30 30 H 1.09002 * 109.47039 * 59.99918 * 1 2 3 31 31 H 1.09004 * 109.47228 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47152 * 240.00060 * 2 1 3 33 33 H 1.08993 * 109.47448 * 299.99957 * 3 2 1 34 34 H 1.09004 * 109.47000 * 60.00515 * 3 2 1 35 35 H 1.09003 * 109.47005 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47616 * 55.00343 * 4 2 1 37 37 H 1.09004 * 109.47300 * 294.99861 * 4 2 1 38 38 H 1.08996 * 109.48116 * 301.17288 * 8 7 5 39 39 H 1.09000 * 109.47852 * 181.14334 * 8 7 5 40 40 H 1.08992 * 109.52421 * 182.48792 * 9 8 7 41 41 H 1.09007 * 109.57402 * 62.32591 * 9 8 7 42 42 H 1.09004 * 109.54425 * 176.84502 * 10 9 8 43 43 H 1.09007 * 109.53617 * 297.01833 * 10 9 8 44 44 H 1.00900 * 110.99891 * 279.23107 * 13 11 5 45 45 H 1.09000 * 109.47076 * 299.99356 * 14 13 11 46 46 H 1.09002 * 109.47233 * 60.00133 * 14 13 11 47 47 H 1.08005 * 119.87451 * 359.97438 * 16 15 14 48 48 H 1.08006 * 120.12311 * 180.23188 * 17 16 15 49 49 H 0.96999 * 119.99703 * 180.02562 * 22 21 19 50 50 H 1.08000 * 120.12787 * 179.97438 * 27 18 17 51 51 H 1.07998 * 119.87228 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1880 6 1 3.9955 0.1611 1.0532 7 8 3.9387 -1.6661 0.0903 8 6 5.3503 -1.8160 -0.0744 9 6 5.9428 -2.4656 1.1788 10 6 5.6058 -1.6034 2.3993 11 6 4.0858 -1.4392 2.4930 12 1 3.6230 -2.4135 2.6496 13 7 3.7562 -0.5516 3.6162 14 6 3.6892 -1.3015 4.8775 15 6 3.3491 -0.3600 6.0042 16 6 4.3661 0.2691 6.7056 17 6 4.0671 1.1344 7.7330 18 6 2.7236 1.3717 8.0773 19 6 2.4045 2.2554 9.1340 20 1 3.1002 3.0311 9.4180 21 6 1.1872 2.1248 9.8119 22 7 0.5072 1.0104 9.7266 23 14 0.5332 3.5416 10.8389 24 1 1.4830 4.6812 10.7716 25 1 -0.7879 3.9670 10.3109 26 1 0.3846 3.1030 12.2498 27 6 1.6998 0.7235 7.3619 28 6 2.0220 -0.1345 6.3352 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9562 0.8901 35 1 3.1299 1.4425 0.0005 36 1 1.6053 -1.7199 1.2951 37 1 1.7515 -0.1584 2.1370 38 1 5.8046 -0.8368 -0.2257 39 1 5.5502 -2.4472 -0.9402 40 1 7.0250 -2.5404 1.0733 41 1 5.5197 -3.4617 1.3086 42 1 5.9764 -2.0888 3.3022 43 1 6.0727 -0.6240 2.2939 44 1 4.4164 0.2086 3.6821 45 1 2.9204 -2.0705 4.8026 46 1 4.6538 -1.7698 5.0735 47 1 5.3967 0.0819 6.4425 48 1 4.8608 1.6263 8.2757 49 1 -0.3367 0.9200 10.1962 50 1 0.6652 0.8981 7.6180 51 1 1.2379 -0.6327 5.7845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360703075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:13 Heat of formation + Delta-G solvation = -60.721909 kcal Electronic energy + Delta-G solvation = -26879.628633 eV Core-core repulsion = 23355.908908 eV Total energy + Delta-G solvation = -3523.719725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.87597 -37.72827 -36.14887 -35.78495 -33.77181 -32.63873 -31.12306 -29.41027 -29.08126 -27.15935 -26.99196 -25.99100 -24.02047 -22.80266 -22.07628 -20.96232 -20.47766 -19.76942 -19.75698 -17.29119 -16.51446 -16.14762 -15.44493 -15.29416 -14.93691 -14.87455 -14.40850 -14.24266 -13.92794 -13.77898 -13.46891 -13.17955 -13.03757 -12.77736 -12.47045 -12.34435 -12.18198 -12.01013 -11.91171 -11.84140 -11.51955 -11.42024 -11.33746 -11.14996 -11.03609 -11.01431 -10.79792 -10.60386 -10.50688 -10.44108 -10.39100 -10.07003 -9.66106 -9.41817 -9.33853 -9.13069 -8.02060 -7.43325 -7.30072 -6.76130 -4.34534 2.73603 3.07035 3.08964 3.12573 3.17081 3.74043 3.93251 4.41768 4.56471 4.68327 4.74418 4.78749 5.01201 5.02403 5.05436 5.15414 5.21886 5.29905 5.50154 5.52777 5.67649 5.68930 5.69285 5.73706 5.75673 5.79535 5.83916 5.89372 5.91718 5.97419 6.05311 6.06059 6.13428 6.21730 6.25286 6.32960 6.37013 6.41716 6.46416 6.62442 6.96593 7.07690 7.16147 7.30610 7.36619 7.43247 7.62027 7.69610 7.89848 8.06798 8.15889 8.31125 8.65758 8.90411 8.98841 10.18369 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002879 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.006785 B = 9724.128403 C =10929.742478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.098 4.098 5 C 0.102 3.898 6 H 0.059 0.941 7 O -0.379 6.379 8 C 0.062 3.938 9 C -0.151 4.151 10 C -0.153 4.153 11 C 0.058 3.942 12 H 0.080 0.920 13 N -0.671 5.671 14 C 0.127 3.873 15 C -0.213 4.213 16 C -0.085 4.085 17 C -0.228 4.228 18 C 0.113 3.887 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.792 5.792 23 Si 0.906 3.094 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.167 4.167 28 C -0.078 4.078 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.340 0.660 45 H 0.062 0.938 46 H 0.018 0.982 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.280 0.720 50 H 0.117 0.883 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 -4.093 -16.817 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.135 4.135 5 C 0.045 3.955 6 H 0.077 0.923 7 O -0.298 6.298 8 C -0.015 4.015 9 C -0.190 4.190 10 C -0.193 4.193 11 C -0.053 4.053 12 H 0.099 0.901 13 N -0.302 5.302 14 C -0.001 4.001 15 C -0.215 4.215 16 C -0.104 4.104 17 C -0.247 4.247 18 C 0.110 3.890 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.418 5.418 23 Si 0.730 3.270 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.187 4.187 28 C -0.097 4.097 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.158 0.842 45 H 0.080 0.920 46 H 0.036 0.964 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.090 0.910 50 H 0.135 0.865 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.723 -4.335 -16.949 17.886 hybrid contribution 0.987 0.432 0.978 1.455 sum 4.710 -3.903 -15.971 17.103 Atomic orbital electron populations 1.21834 0.95570 1.01458 1.01540 1.21073 0.95295 0.96110 0.98859 1.21878 1.00820 0.96223 1.01511 1.21607 0.92035 1.01120 0.98774 1.22112 0.96224 0.92578 0.84624 0.92344 1.87936 1.21731 1.70303 1.49794 1.22501 0.82174 0.99600 0.97269 1.22155 1.00999 1.00170 0.95650 1.22375 0.98111 1.00330 0.98452 1.22219 0.92871 0.97572 0.92637 0.90144 1.60648 1.54918 1.11585 1.03047 1.20563 0.98077 0.94471 0.86958 1.18878 0.93642 1.07321 1.01626 1.20342 0.95883 0.97598 0.96563 1.20916 0.95929 1.05248 1.02646 1.17622 0.90655 0.90012 0.90695 1.19627 1.01734 1.13914 1.13984 0.90512 1.25908 0.96184 0.95862 0.96199 1.69838 1.13204 1.23758 1.34953 0.86302 0.79460 0.81931 0.79268 1.18418 1.19681 1.20032 1.21318 0.99622 1.01161 0.96569 1.20488 0.94195 0.98177 0.96828 0.92518 0.93180 0.92944 0.91130 0.93334 0.92371 0.92933 0.91985 0.88563 0.93540 0.89262 0.91273 0.91156 0.91543 0.91815 0.84203 0.91995 0.96401 0.90060 0.89252 0.90951 0.86547 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 2 C -0.09 -1.06 2.87 -90.62 -0.26 -1.32 16 3 C -0.15 -1.58 8.95 37.15 0.33 -1.25 16 4 C -0.10 -1.22 4.33 -26.73 -0.12 -1.33 16 5 C 0.10 1.24 2.20 -26.67 -0.06 1.18 16 6 H 0.06 0.72 6.35 -51.93 -0.33 0.39 16 7 O -0.38 -4.58 9.86 -35.23 -0.35 -4.93 16 8 C 0.06 0.59 6.84 37.20 0.25 0.84 16 9 C -0.15 -1.42 6.14 -26.59 -0.16 -1.59 16 10 C -0.15 -1.69 5.28 -26.55 -0.14 -1.83 16 11 C 0.06 0.73 2.08 -67.57 -0.14 0.59 16 12 H 0.08 1.10 7.81 -51.93 -0.41 0.69 16 13 N -0.67 -9.91 5.52 -107.83 -0.59 -10.50 16 14 C 0.13 2.15 5.60 -4.98 -0.03 2.12 16 15 C -0.21 -4.48 5.42 -104.33 -0.56 -5.04 16 16 C -0.09 -1.85 9.67 -39.66 -0.38 -2.24 16 17 C -0.23 -5.55 9.80 -38.88 -0.38 -5.93 16 18 C 0.11 2.99 5.57 -106.83 -0.60 2.40 16 19 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 20 H 0.08 1.97 7.91 -52.48 -0.42 1.55 16 21 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 22 N -0.79 -20.47 10.95 55.55 0.61 -19.86 16 23 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 28 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.56 6.46 -51.93 -0.34 0.23 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.35 7.54 -51.93 -0.39 0.96 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.77 7.55 -51.93 -0.39 0.38 16 43 H 0.06 0.69 8.09 -51.92 -0.42 0.27 16 44 H 0.34 5.06 8.44 -39.29 -0.33 4.72 16 45 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 46 H 0.02 0.29 7.45 -51.93 -0.39 -0.10 16 47 H 0.08 1.56 8.06 -52.48 -0.42 1.14 16 48 H 0.09 2.07 8.06 -52.48 -0.42 1.64 16 49 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 50 H 0.12 3.13 6.15 -52.49 -0.32 2.80 16 51 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -26.42 397.07 -11.61 -38.03 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -9.18 Total: 9.90 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -3.05 Total: -32.23 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.01 Total: -30.36 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.35 Total: -4.93 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -26.42 -11.61 -38.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360703075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.693 kcal (2) G-P(sol) polarization free energy of solvation -26.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds