Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46836 * 2 1 4 4 C 1.53001 * 109.46795 * 119.99497 * 2 1 3 5 5 C 1.53000 * 109.47233 * 65.00321 * 4 2 1 6 6 H 1.08992 * 109.47992 * 305.02078 * 5 4 2 7 7 O 1.42907 * 109.48961 * 65.05002 * 5 4 2 8 8 C 1.42899 * 114.09747 * 181.14856 * 7 5 4 9 9 C 1.53089 * 109.41522 * 298.83977 * 8 7 5 10 10 C 1.53183 * 109.16447 * 57.60895 * 9 8 7 11 11 C 1.53087 * 109.48142 * 184.99651 * 5 4 2 12 12 H 1.09003 * 109.52413 * 62.42449 * 11 5 4 13 13 N 1.46901 * 109.52297 * 302.30043 * 11 5 4 14 14 C 1.46903 * 110.99902 * 154.99896 * 13 11 5 15 15 C 1.50699 * 109.46977 * 180.02562 * 14 13 11 16 16 C 1.38635 * 119.75470 * 90.00207 * 15 14 13 17 17 C 1.37611 * 120.25212 * 180.02562 * 16 15 14 18 18 C 1.40717 * 119.74429 * 359.97438 * 17 16 15 19 19 C 1.41393 * 120.24544 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00167 * 334.84990 * 19 18 17 21 21 C 1.39947 * 120.00447 * 154.85088 * 19 18 17 22 22 N 1.30829 * 119.99580 * 334.27844 * 21 19 18 23 23 Si 1.86794 * 120.00413 * 154.27772 * 21 19 18 24 24 H 1.48504 * 109.47556 * 180.02562 * 23 21 19 25 25 H 1.48495 * 109.47307 * 60.00117 * 23 21 19 26 26 H 1.48499 * 109.47060 * 300.00218 * 23 21 19 27 27 C 1.40717 * 119.51251 * 0.27207 * 18 17 16 28 28 C 1.37622 * 119.74258 * 359.45159 * 27 18 17 29 29 H 1.08995 * 109.47310 * 300.00287 * 1 2 3 30 30 H 1.08999 * 109.47169 * 60.00531 * 1 2 3 31 31 H 1.09007 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47310 * 239.99713 * 2 1 3 33 33 H 1.09007 * 109.47070 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47179 * 299.99307 * 3 2 1 35 35 H 1.08995 * 109.47406 * 59.99771 * 3 2 1 36 36 H 1.09001 * 109.47418 * 305.00142 * 4 2 1 37 37 H 1.09004 * 109.46508 * 185.00168 * 4 2 1 38 38 H 1.09001 * 109.48264 * 58.82444 * 8 7 5 39 39 H 1.09003 * 109.48527 * 178.84380 * 8 7 5 40 40 H 1.09004 * 109.52366 * 177.51288 * 9 8 7 41 41 H 1.09001 * 109.52160 * 297.64199 * 9 8 7 42 42 H 1.08996 * 109.54304 * 183.15468 * 10 9 8 43 43 H 1.09001 * 109.53982 * 62.88565 * 10 9 8 44 44 H 1.00896 * 111.00301 * 278.95628 * 13 11 5 45 45 H 1.08993 * 109.47077 * 60.00324 * 14 13 11 46 46 H 1.09004 * 109.47115 * 300.00290 * 14 13 11 47 47 H 1.07996 * 119.87152 * 359.97438 * 16 15 14 48 48 H 1.07999 * 120.13162 * 179.97438 * 17 16 15 49 49 H 0.96996 * 120.00212 * 354.29995 * 22 21 19 50 50 H 1.07998 * 120.12873 * 179.72603 * 27 18 17 51 51 H 1.07997 * 119.87625 * 180.27232 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1882 6 1 0.5564 -2.2708 1.0525 7 8 2.2988 -2.8269 0.0913 8 6 1.9694 -4.2076 -0.0732 9 6 2.3831 -4.9824 1.1807 10 6 1.6815 -4.3767 2.4003 11 6 2.0355 -2.8893 2.4927 12 1 1.4975 -2.4369 3.3259 13 7 3.4816 -2.7411 2.7039 14 6 3.8179 -2.8374 4.1307 15 6 5.3062 -2.6804 4.3077 16 6 5.8467 -1.4186 4.5017 17 6 7.2044 -1.2634 4.6639 18 6 8.0447 -2.3917 4.6329 19 6 9.4411 -2.2445 4.7990 20 1 9.9190 -1.3089 4.5491 21 6 10.2041 -3.3113 5.2873 22 7 9.6464 -4.2226 6.0424 23 14 12.0185 -3.4341 4.8609 24 1 12.5954 -4.6462 5.4960 25 1 12.7271 -2.2283 5.3602 26 1 12.1756 -3.5257 3.3871 27 6 7.4856 -3.6670 4.4302 28 6 6.1244 -3.7991 4.2760 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 0.8949 -4.3094 -0.2254 39 1 2.4985 -4.6070 -0.9385 40 1 2.0928 -6.0277 1.0753 41 1 3.4633 -4.9156 1.3103 42 1 2.0146 -4.8877 3.3036 43 1 0.6026 -4.4888 2.2932 44 1 3.9974 -3.4199 2.1643 45 1 3.5068 -3.8097 4.5125 46 1 3.3019 -2.0495 4.6796 47 1 5.1999 -0.5541 4.5247 48 1 7.6234 -0.2795 4.8145 49 1 8.7268 -4.1162 6.3320 50 1 8.1217 -4.5393 4.4002 51 1 5.6926 -4.7774 4.1247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360703076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = -63.565369 kcal Electronic energy + Delta-G solvation = -27141.691834 eV Core-core repulsion = 23617.848807 eV Total energy + Delta-G solvation = -3523.843027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.99793 -37.85693 -36.26159 -35.61889 -33.93503 -32.44466 -31.13932 -29.49566 -28.98181 -27.23340 -26.99412 -25.80395 -24.12455 -23.04806 -22.44557 -21.07551 -20.00439 -19.84152 -19.45461 -17.88457 -16.61514 -16.20419 -15.50037 -15.17188 -14.80296 -14.59109 -14.38672 -14.25860 -14.11427 -13.77275 -13.62894 -13.35794 -13.22827 -12.62557 -12.52170 -12.30533 -12.20917 -12.08633 -12.01620 -11.84543 -11.68106 -11.61175 -11.31687 -11.19623 -11.05000 -10.78695 -10.62116 -10.55291 -10.53053 -10.41128 -10.36724 -10.10909 -9.56797 -9.51942 -9.33685 -8.94313 -7.97360 -7.63988 -7.44719 -7.15123 -4.40582 2.74200 2.92405 3.16942 3.26591 3.37545 3.80196 4.03750 4.42975 4.54854 4.70697 4.74905 4.81727 4.90857 4.96448 5.00060 5.13071 5.25673 5.31403 5.42434 5.51913 5.53447 5.58706 5.59948 5.68480 5.71147 5.76751 5.79982 5.82575 5.86348 5.92425 5.93741 6.05425 6.07661 6.13743 6.21757 6.27361 6.29654 6.32085 6.45207 6.57051 6.80539 7.05404 7.18993 7.29132 7.42716 7.44143 7.71999 7.74960 7.85277 7.85705 8.02859 8.23403 8.36099 8.79857 8.92647 10.07360 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.002902 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.326822 B = 9647.268853 C =10385.937355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.096 4.096 5 C 0.105 3.895 6 H 0.053 0.947 7 O -0.368 6.368 8 C 0.063 3.937 9 C -0.158 4.158 10 C -0.154 4.154 11 C 0.054 3.946 12 H 0.080 0.920 13 N -0.666 5.666 14 C 0.125 3.875 15 C -0.223 4.223 16 C -0.057 4.057 17 C -0.231 4.231 18 C 0.100 3.900 19 C -0.525 4.525 20 H 0.074 0.926 21 C 0.039 3.961 22 N -0.799 5.799 23 Si 1.064 2.936 24 H -0.274 1.274 25 H -0.276 1.276 26 H -0.274 1.274 27 C -0.221 4.221 28 C -0.075 4.075 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.344 0.656 45 H 0.016 0.984 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.299 0.701 50 H 0.103 0.897 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 1.558 -9.232 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.133 4.133 5 C 0.047 3.953 6 H 0.071 0.929 7 O -0.287 6.287 8 C -0.014 4.014 9 C -0.195 4.195 10 C -0.193 4.193 11 C -0.057 4.057 12 H 0.098 0.902 13 N -0.299 5.299 14 C -0.003 4.003 15 C -0.224 4.224 16 C -0.076 4.076 17 C -0.250 4.250 18 C 0.098 3.902 19 C -0.553 4.553 20 H 0.092 0.908 21 C -0.182 4.182 22 N -0.422 5.422 23 Si 0.888 3.112 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.200 1.200 27 C -0.240 4.240 28 C -0.094 4.094 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.164 0.836 45 H 0.034 0.966 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.121 0.879 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.229 1.353 -9.117 17.800 hybrid contribution -1.760 -0.313 0.250 1.805 sum -16.989 1.040 -8.866 19.191 Atomic orbital electron populations 1.21902 0.96099 1.01240 1.01231 1.21114 0.94996 0.96033 0.99464 1.21823 1.01366 0.96038 1.01107 1.21509 1.03702 0.91304 0.96816 1.22184 0.94471 0.93338 0.85315 0.92908 1.87979 1.69026 1.22090 1.49582 1.22487 0.99077 0.82549 0.97314 1.22172 1.01849 0.99769 0.95758 1.22272 1.00497 0.97925 0.98591 1.22239 0.91587 0.93542 0.98317 0.90171 1.60707 1.03244 1.56868 1.09044 1.20566 0.94111 0.97944 0.87639 1.18836 0.92801 0.93541 1.17249 1.20365 0.94493 0.94991 0.97705 1.20936 0.92903 0.97685 1.13499 1.17668 0.93107 0.91259 0.88213 1.20568 0.92763 1.01586 1.40352 0.90761 1.26997 1.07724 0.91404 0.92111 1.70453 1.17833 1.33135 1.20771 0.83655 0.72699 0.77305 0.77559 1.19922 1.20156 1.19995 1.21092 0.93934 0.97666 1.11324 1.20434 0.93930 0.95690 0.99344 0.93017 0.93174 0.92948 0.90650 0.92441 0.93220 0.92994 0.91398 0.89229 0.93839 0.89159 0.91151 0.90736 0.91553 0.91859 0.83551 0.96574 0.92204 0.89330 0.89073 0.88780 0.87916 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.95 37.16 0.33 -1.00 16 2 C -0.10 -1.04 2.87 -90.62 -0.26 -1.30 16 3 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 4 C -0.10 -1.15 4.13 -26.73 -0.11 -1.26 16 5 C 0.10 1.23 2.27 -26.69 -0.06 1.17 16 6 H 0.05 0.56 6.34 -51.93 -0.33 0.23 16 7 O -0.37 -4.76 9.77 -35.23 -0.34 -5.11 16 8 C 0.06 0.66 6.84 37.20 0.25 0.91 16 9 C -0.16 -1.68 5.85 -26.59 -0.16 -1.84 16 10 C -0.15 -1.69 5.61 -26.54 -0.15 -1.84 16 11 C 0.05 0.67 2.36 -67.57 -0.16 0.51 16 12 H 0.08 0.97 7.80 -51.93 -0.41 0.56 16 13 N -0.67 -10.23 5.39 -107.84 -0.58 -10.81 16 14 C 0.13 2.13 5.60 -4.97 -0.03 2.11 16 15 C -0.22 -4.72 5.42 -104.33 -0.56 -5.29 16 16 C -0.06 -1.27 9.67 -39.66 -0.38 -1.65 16 17 C -0.23 -5.73 9.80 -38.87 -0.38 -6.12 16 18 C 0.10 2.69 5.30 -106.82 -0.57 2.12 16 19 C -0.52 -14.16 8.98 -37.74 -0.34 -14.50 16 20 H 0.07 1.96 7.96 -52.49 -0.42 1.54 16 21 C 0.04 1.01 4.93 -17.34 -0.09 0.92 16 22 N -0.80 -21.44 12.32 55.55 0.68 -20.76 16 23 Si 1.06 21.83 30.00 -169.99 -5.10 16.73 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 C -0.22 -5.67 7.96 -38.87 -0.31 -5.98 16 28 C -0.08 -1.71 9.67 -39.66 -0.38 -2.09 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.47 6.46 -51.93 -0.34 0.13 16 32 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.32 7.71 -51.93 -0.40 0.92 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.93 6.45 -51.93 -0.34 0.60 16 42 H 0.07 0.78 7.42 -51.93 -0.39 0.40 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.34 5.65 6.45 -39.29 -0.25 5.40 16 45 H 0.02 0.27 7.36 -51.93 -0.38 -0.11 16 46 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 47 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 48 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 49 H 0.30 8.23 6.70 -40.82 -0.27 7.96 16 50 H 0.10 2.74 6.50 -52.49 -0.34 2.40 16 51 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -27.11 392.66 -11.40 -38.51 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -8.97 Total: 11.76 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: -3.01 Total: -36.25 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.10 Total: -31.57 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.34 Total: -5.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.10 Total: 16.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -27.11 -11.40 -38.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360703076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.056 kcal (2) G-P(sol) polarization free energy of solvation -27.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds