Wall clock time and date at job start Tue Mar 31 2020 11:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47254 * 2 1 4 4 C 1.52999 * 109.47216 * 120.00299 * 2 1 3 5 5 C 1.53001 * 109.47415 * 174.99905 * 4 2 1 6 6 H 1.09000 * 109.49125 * 55.02446 * 5 4 2 7 7 O 1.42899 * 109.47946 * 295.00190 * 5 4 2 8 8 C 1.42907 * 114.09821 * 178.86213 * 7 5 4 9 9 C 1.53088 * 109.41547 * 61.15271 * 8 7 5 10 10 C 1.53178 * 109.16480 * 302.38962 * 9 8 7 11 11 C 1.53088 * 109.48304 * 175.05404 * 5 4 2 12 12 H 1.09002 * 109.52433 * 297.50175 * 11 5 4 13 13 N 1.46903 * 109.52194 * 57.68654 * 11 5 4 14 14 C 1.46902 * 111.00278 * 205.00190 * 13 11 5 15 15 C 1.50695 * 109.47257 * 179.97438 * 14 13 11 16 16 C 1.38638 * 119.74599 * 269.72320 * 15 14 13 17 17 C 1.37629 * 120.24467 * 179.76484 * 16 15 14 18 18 C 1.40712 * 119.74560 * 0.48745 * 17 16 15 19 19 C 1.41395 * 120.24454 * 179.79008 * 18 17 16 20 20 H 1.08000 * 119.99489 * 204.36221 * 19 18 17 21 21 C 1.39938 * 119.99974 * 24.36427 * 19 18 17 22 22 N 1.30825 * 120.00254 * 17.86167 * 21 19 18 23 23 Si 1.86803 * 120.00117 * 197.86390 * 21 19 18 24 24 H 1.48494 * 109.47281 * 89.99725 * 23 21 19 25 25 H 1.48504 * 109.47218 * 210.00181 * 23 21 19 26 26 H 1.48507 * 109.46841 * 329.99771 * 23 21 19 27 27 C 1.40723 * 119.50920 * 359.76428 * 18 17 16 28 28 C 1.37612 * 119.74753 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47059 * 300.00331 * 1 2 3 30 30 H 1.09000 * 109.47061 * 59.99988 * 1 2 3 31 31 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47028 * 240.00192 * 2 1 3 33 33 H 1.09003 * 109.47097 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47435 * 299.99633 * 3 2 1 35 35 H 1.09000 * 109.47223 * 60.00614 * 3 2 1 36 36 H 1.08997 * 109.46989 * 54.99567 * 4 2 1 37 37 H 1.09000 * 109.47150 * 294.99843 * 4 2 1 38 38 H 1.08999 * 109.47670 * 181.14003 * 8 7 5 39 39 H 1.08999 * 109.47829 * 301.16666 * 8 7 5 40 40 H 1.09000 * 109.52165 * 182.48781 * 9 8 7 41 41 H 1.08997 * 109.52444 * 62.30180 * 9 8 7 42 42 H 1.08997 * 109.54343 * 297.11841 * 10 9 8 43 43 H 1.09000 * 109.54145 * 176.84871 * 10 9 8 44 44 H 1.00910 * 110.99686 * 328.95341 * 13 11 5 45 45 H 1.09002 * 109.46651 * 299.99999 * 14 13 11 46 46 H 1.08998 * 109.47026 * 59.99629 * 14 13 11 47 47 H 1.07999 * 119.87954 * 0.02562 * 16 15 14 48 48 H 1.07997 * 120.12638 * 180.23194 * 17 16 15 49 49 H 0.97001 * 120.00592 * 180.02562 * 22 21 19 50 50 H 1.08001 * 120.12458 * 180.02562 * 27 18 17 51 51 H 1.08003 * 119.87575 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 1 3.9958 0.1609 1.0532 7 8 3.9387 -1.6661 0.0902 8 6 5.3503 -1.8161 -0.0745 9 6 5.9428 -2.4657 1.1788 10 6 5.6059 -1.6035 2.3992 11 6 4.0856 -1.4411 2.4919 12 1 3.8396 -0.7834 3.3255 13 7 3.4635 -2.7553 2.7019 14 6 3.4422 -3.1058 4.1283 15 6 2.7978 -4.4567 4.3041 16 6 1.4288 -4.5450 4.5037 17 6 0.8289 -5.7737 4.6606 18 6 1.6121 -6.9422 4.6280 19 6 1.0074 -8.2097 4.7924 20 1 1.5904 -9.0430 5.1561 21 6 -0.3463 -8.3844 4.4840 22 7 -0.9638 -7.5106 3.7312 23 14 -1.2718 -9.8654 5.1471 24 1 -1.8712 -9.5261 6.4627 25 1 -2.3476 -10.2436 4.1958 26 1 -0.3323 -11.0039 5.3100 27 6 3.0016 -6.8401 4.4300 28 6 3.5794 -5.6013 4.2710 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6053 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1369 38 1 5.5502 -2.4473 -0.9403 39 1 5.8047 -0.8369 -0.2258 40 1 7.0250 -2.5406 1.0733 41 1 5.5187 -3.4615 1.3080 42 1 6.0714 -0.6236 2.2930 43 1 5.9766 -2.0888 3.3020 44 1 2.5345 -2.7825 2.3089 45 1 4.4628 -3.1372 4.5100 46 1 2.8716 -2.3572 4.6779 47 1 0.8301 -3.6465 4.5320 48 1 -0.2383 -5.8405 4.8122 49 1 -1.9022 -7.6315 3.5176 50 1 3.6122 -7.7305 4.4028 51 1 4.6457 -5.5204 4.1194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360703077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:22 Heat of formation + Delta-G solvation = -55.585058 kcal Electronic energy + Delta-G solvation = -27187.848262 eV Core-core repulsion = 23664.351287 eV Total energy + Delta-G solvation = -3523.496975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.89242 -37.64339 -36.25059 -35.45981 -33.69260 -32.50340 -31.14346 -29.33958 -29.06084 -27.27856 -27.08851 -25.98552 -24.02545 -22.86777 -22.34304 -20.94261 -19.96613 -19.80582 -19.29794 -17.25361 -16.29881 -16.19946 -15.89285 -15.22909 -15.08620 -14.53146 -14.32264 -14.17346 -13.86509 -13.71998 -13.48632 -13.40989 -12.81939 -12.68653 -12.36302 -12.32510 -12.27209 -12.04043 -11.91521 -11.89544 -11.59615 -11.40391 -11.32368 -11.07866 -10.96380 -10.87849 -10.68152 -10.66898 -10.57741 -10.40118 -10.30947 -10.01657 -9.52680 -9.35395 -9.22125 -9.09254 -7.92045 -7.40431 -7.24849 -6.72924 -4.31320 2.77354 3.08372 3.12205 3.12983 3.21154 3.83398 3.95317 4.49583 4.55119 4.73296 4.82347 4.87738 4.98048 5.03400 5.10375 5.17245 5.28495 5.41279 5.45282 5.53718 5.62110 5.64378 5.67930 5.72910 5.76800 5.77754 5.88199 5.89005 5.94492 5.95675 5.98064 6.08893 6.16007 6.23028 6.28076 6.33950 6.37604 6.43594 6.46349 6.55982 6.98405 7.11164 7.32010 7.33238 7.42337 7.53483 7.65774 7.86478 7.94908 8.09436 8.19245 8.34769 8.68082 8.93557 9.02131 10.21543 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.003131 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.617013 B = 8940.834088 C =10115.170381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.113 4.113 5 C 0.092 3.908 6 H 0.059 0.941 7 O -0.365 6.365 8 C 0.067 3.933 9 C -0.147 4.147 10 C -0.108 4.108 11 C 0.054 3.946 12 H 0.044 0.956 13 N -0.668 5.668 14 C 0.125 3.875 15 C -0.211 4.211 16 C -0.096 4.096 17 C -0.166 4.166 18 C 0.112 3.888 19 C -0.464 4.464 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.792 5.792 23 Si 0.907 3.093 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.228 4.228 28 C -0.068 4.068 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.344 0.656 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.081 0.919 48 H 0.116 0.884 49 H 0.280 0.720 50 H 0.090 0.910 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.472 15.283 -5.827 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.151 4.151 5 C 0.034 3.966 6 H 0.077 0.923 7 O -0.283 6.283 8 C -0.010 4.010 9 C -0.185 4.185 10 C -0.146 4.146 11 C -0.057 4.057 12 H 0.062 0.938 13 N -0.303 5.303 14 C -0.003 4.003 15 C -0.213 4.213 16 C -0.115 4.115 17 C -0.185 4.185 18 C 0.110 3.890 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.141 4.141 22 N -0.418 5.418 23 Si 0.731 3.269 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.248 4.248 28 C -0.087 4.087 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.166 0.834 45 H 0.077 0.923 46 H 0.034 0.966 47 H 0.100 0.900 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.108 0.892 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.674 14.897 -6.197 17.460 hybrid contribution -0.923 0.018 0.765 1.199 sum 5.751 14.914 -5.432 16.882 Atomic orbital electron populations 1.21849 0.95286 1.02092 1.01346 1.21035 0.95488 0.95748 0.98848 1.21900 1.00888 0.96315 1.01401 1.21729 0.93278 1.01812 0.98278 1.22257 0.95276 0.92713 0.86347 0.92341 1.87947 1.22137 1.69623 1.48625 1.22478 0.81738 0.98873 0.97935 1.22040 0.99777 1.01950 0.94718 1.21550 0.94982 0.98985 0.99086 1.22142 0.95498 0.91503 0.96524 0.93839 1.60594 1.27174 1.26368 1.16137 1.20605 0.98568 0.94155 0.86961 1.18887 0.93537 0.92845 1.16001 1.20514 0.93391 0.96443 1.01108 1.21262 0.99896 0.91096 1.06235 1.17614 0.90910 0.93197 0.87306 1.19600 0.94313 0.96310 1.39120 0.90534 1.25897 0.97934 0.97621 0.92688 1.69835 1.11720 1.34585 1.25640 0.86339 0.79313 0.81682 0.79530 1.19337 1.20348 1.18652 1.20970 0.95585 0.95444 1.12785 1.20303 0.96854 0.92522 0.98982 0.92934 0.92928 0.92307 0.90266 0.92792 0.92928 0.92970 0.90304 0.90952 0.89360 0.94339 0.92160 0.89193 0.92740 0.91585 0.83397 0.92327 0.96644 0.90045 0.86611 0.90959 0.89207 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 37.16 0.34 -1.15 16 2 C -0.09 -0.97 2.87 -90.62 -0.26 -1.23 16 3 C -0.15 -1.32 8.95 37.16 0.33 -0.99 16 4 C -0.11 -1.32 3.98 -26.73 -0.11 -1.43 16 5 C 0.09 1.11 2.24 -26.68 -0.06 1.05 16 6 H 0.06 0.63 6.35 -51.93 -0.33 0.30 16 7 O -0.36 -4.97 9.77 -35.23 -0.34 -5.32 16 8 C 0.07 0.76 6.84 37.20 0.25 1.02 16 9 C -0.15 -1.78 5.97 -26.59 -0.16 -1.94 16 10 C -0.11 -1.30 5.64 -26.55 -0.15 -1.45 16 11 C 0.05 0.70 2.36 -67.57 -0.16 0.54 16 12 H 0.04 0.56 7.80 -51.93 -0.41 0.15 16 13 N -0.67 -10.78 5.60 -107.84 -0.60 -11.38 16 14 C 0.12 2.20 5.60 -4.98 -0.03 2.17 16 15 C -0.21 -4.57 5.41 -104.33 -0.56 -5.14 16 16 C -0.10 -2.22 9.67 -39.66 -0.38 -2.60 16 17 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 18 C 0.11 3.03 5.58 -106.82 -0.60 2.43 16 19 C -0.46 -12.47 9.05 -37.74 -0.34 -12.81 16 20 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 21 C 0.08 1.93 5.14 -17.34 -0.09 1.85 16 22 N -0.79 -20.68 10.95 55.55 0.61 -20.07 16 23 Si 0.91 18.85 29.60 -169.99 -5.03 13.82 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 28 C -0.07 -1.54 9.67 -39.66 -0.38 -1.93 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 33 H 0.05 0.48 6.46 -51.93 -0.34 0.14 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.07 6.36 -51.93 -0.33 0.74 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.35 7.76 -51.93 -0.40 0.95 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.84 7.42 -51.93 -0.39 0.45 16 44 H 0.34 5.90 6.12 -39.29 -0.24 5.66 16 45 H 0.06 1.00 7.36 -51.93 -0.38 0.61 16 46 H 0.02 0.26 7.99 -51.93 -0.42 -0.15 16 47 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 48 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 49 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 50 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 51 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -27.26 393.18 -11.51 -38.77 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -9.00 Total: 10.61 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: -3.07 Total: -32.36 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.00 Total: -31.46 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.34 Total: -5.32 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.26 -11.51 -38.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360703077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.813 kcal (2) G-P(sol) polarization free energy of solvation -27.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds