Wall clock time and date at job start Tue Mar 31 2020 13:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 H 1.08999 * 109.46974 * 66.24728 * 3 2 1 5 5 C 1.50696 * 109.46941 * 186.24407 * 3 2 1 6 6 C 1.38235 * 120.00136 * 81.53626 * 5 3 2 7 7 C 1.38233 * 120.00181 * 179.78566 * 6 5 3 8 8 C 1.38238 * 119.99707 * 0.44018 * 7 6 5 9 9 C 1.38239 * 120.00251 * 359.81570 * 8 7 6 10 10 C 1.38234 * 119.99642 * 359.97069 * 9 8 7 11 11 N 1.46497 * 109.47083 * 306.24301 * 3 2 1 12 12 C 1.46500 * 119.99789 * 158.40593 * 11 3 2 13 13 C 1.53005 * 109.47419 * 266.74532 * 12 11 3 14 14 C 1.53004 * 109.46481 * 66.13732 * 13 12 11 15 15 C 1.52995 * 109.47348 * 186.13864 * 13 12 11 16 16 C 1.34777 * 120.00159 * 338.13309 * 11 3 2 17 17 O 1.21278 * 119.99937 * 2.00398 * 16 11 3 18 18 C 1.50700 * 119.99760 * 182.00379 * 16 11 3 19 19 C 1.52999 * 109.46924 * 179.97438 * 18 16 11 20 20 C 1.50704 * 109.47564 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99505 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00356 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99774 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99783 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46887 * 90.00240 * 24 22 20 26 26 H 1.48506 * 109.46651 * 210.00010 * 24 22 20 27 27 H 1.48494 * 109.47312 * 329.99709 * 24 22 20 28 28 H 1.08996 * 109.46869 * 180.73939 * 1 2 3 29 29 H 1.09001 * 109.46995 * 300.73520 * 1 2 3 30 30 H 1.09001 * 109.47278 * 60.73287 * 1 2 3 31 31 H 1.09004 * 109.46683 * 240.00101 * 2 1 3 32 32 H 1.08993 * 109.47395 * 120.00221 * 2 1 3 33 33 H 1.07996 * 119.99803 * 0.02562 * 6 5 3 34 34 H 1.08000 * 120.00463 * 180.27640 * 7 6 5 35 35 H 1.07999 * 120.00171 * 179.82875 * 8 7 6 36 36 H 1.08001 * 120.00194 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.99537 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.47332 * 26.74890 * 12 11 3 39 39 H 1.09000 * 109.47396 * 146.74530 * 12 11 3 40 40 H 1.08997 * 109.47114 * 306.14590 * 13 12 11 41 41 H 1.08998 * 109.47335 * 62.32669 * 14 13 12 42 42 H 1.09005 * 109.46472 * 182.32466 * 14 13 12 43 43 H 1.08995 * 109.47318 * 302.32199 * 14 13 12 44 44 H 1.08999 * 109.47205 * 60.00095 * 15 13 12 45 45 H 1.09003 * 109.47361 * 180.02562 * 15 13 12 46 46 H 1.08998 * 109.47024 * 299.99941 * 15 13 12 47 47 H 1.08999 * 109.47261 * 299.99705 * 18 16 11 48 48 H 1.08999 * 109.47398 * 60.00281 * 18 16 11 49 49 H 1.09008 * 109.47179 * 299.99952 * 19 18 16 50 50 H 1.09006 * 109.47552 * 59.99954 * 19 18 16 51 51 H 0.96996 * 119.99864 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7709 1.9230 0.9406 5 6 3.5390 1.4453 -0.1545 6 6 4.1048 1.3134 -1.4089 7 6 5.4798 1.3204 -1.5511 8 6 6.2892 1.4502 -0.4380 9 6 5.7235 1.5767 0.8170 10 6 4.3484 1.5742 0.9587 11 7 1.4329 2.1751 -1.1140 12 6 1.3642 3.6380 -1.0777 13 6 0.0201 4.0712 -0.4890 14 6 -0.0523 3.6506 0.9804 15 6 -0.1155 5.5916 -0.5915 16 6 0.9425 1.5035 -2.1746 17 8 0.9709 0.2912 -2.1906 18 6 0.3589 2.2591 -3.3406 19 6 -0.1215 1.2673 -4.4019 20 6 -0.7057 2.0228 -5.5677 21 1 -0.7321 3.1024 -5.5529 22 6 -1.2075 1.3357 -6.6527 23 7 -1.7168 1.9951 -7.6703 24 14 -1.1625 -0.5316 -6.6780 25 1 -2.4115 -1.0649 -6.0772 26 1 -1.0465 -1.0049 -8.0808 27 1 0.0062 -1.0092 -5.8962 28 1 -0.3633 -1.0276 0.0133 29 1 -0.3633 0.5252 0.8833 30 1 -0.3634 0.5024 -0.8965 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.4726 1.2088 -2.2781 34 1 5.9218 1.2219 -2.5316 35 1 7.3634 1.4529 -0.5487 36 1 6.3558 1.6777 1.6867 37 1 3.9065 1.6726 1.9392 38 1 2.1737 4.0246 -0.4584 39 1 1.4614 4.0316 -2.0895 40 1 -0.7893 3.5959 -1.0431 41 1 0.7318 4.1578 1.5425 42 1 -1.0258 3.9223 1.3885 43 1 0.0856 2.5721 1.0568 44 1 -0.0640 5.8912 -1.6383 45 1 -1.0729 5.9002 -0.1717 46 1 0.6939 6.0668 -0.0373 47 1 -0.4825 2.8617 -2.9986 48 1 1.1209 2.9095 -3.7701 49 1 0.7202 0.6650 -4.7439 50 1 -0.8834 0.6165 -3.9727 51 1 -2.0702 1.5118 -8.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361777836.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:03 Heat of formation + Delta-G solvation = -7.819834 kcal Electronic energy + Delta-G solvation = -28327.729239 eV Core-core repulsion = 24806.303520 eV Total energy + Delta-G solvation = -3521.425719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84914 -38.85979 -36.80259 -34.99774 -33.46423 -32.58111 -31.06463 -30.89047 -30.81953 -27.35885 -26.77353 -26.24392 -25.08763 -22.62005 -22.25965 -21.76965 -20.39249 -20.25090 -18.59846 -17.22486 -16.99119 -16.34226 -15.92881 -15.63166 -15.18421 -14.90508 -14.39621 -14.14800 -14.06505 -13.66040 -13.50754 -13.39982 -13.30379 -13.08905 -12.78293 -12.54870 -12.44849 -12.28068 -12.13215 -11.89822 -11.80280 -11.50490 -11.37383 -11.26697 -11.05795 -11.05477 -10.84755 -10.73442 -10.57613 -10.40035 -10.06331 -9.95055 -9.73800 -9.17563 -8.96257 -8.77471 -8.59750 -8.50671 -8.38270 -6.02697 -4.01164 1.27891 1.36835 3.07076 3.19135 3.37563 3.44390 3.54726 3.77041 4.50853 4.65221 4.73220 4.82062 4.87163 4.92807 4.93924 5.01165 5.11124 5.25787 5.32960 5.36440 5.42689 5.46796 5.52967 5.53513 5.60175 5.62772 5.72278 5.76596 5.80538 5.83688 5.96398 5.97688 6.00950 6.06882 6.09025 6.12319 6.19949 6.25133 6.29522 6.39861 6.48014 6.52103 6.60179 6.67599 6.71447 6.95128 6.96666 7.36670 7.44029 7.67578 7.81070 8.50692 8.67579 9.00686 9.60598 11.10224 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.004378 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.901690 B = 6394.723094 C = 7359.902055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.184 3.816 4 H 0.085 0.915 5 C -0.093 4.093 6 C -0.095 4.095 7 C -0.120 4.120 8 C -0.125 4.125 9 C -0.124 4.124 10 C -0.116 4.116 11 N -0.610 5.610 12 C 0.117 3.883 13 C -0.117 4.117 14 C -0.150 4.150 15 C -0.145 4.145 16 C 0.510 3.490 17 O -0.522 6.522 18 C -0.123 4.123 19 C 0.003 3.997 20 C -0.523 4.523 21 H 0.072 0.928 22 C 0.070 3.930 23 N -0.904 5.904 24 Si 0.876 3.124 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.261 1.261 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.022 0.978 50 H 0.018 0.982 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.430 3.600 20.539 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.081 3.919 4 H 0.102 0.898 5 C -0.094 4.094 6 C -0.113 4.113 7 C -0.138 4.138 8 C -0.143 4.143 9 C -0.142 4.142 10 C -0.134 4.134 11 N -0.344 5.344 12 C -0.007 4.007 13 C -0.136 4.136 14 C -0.208 4.208 15 C -0.203 4.203 16 C 0.302 3.698 17 O -0.399 6.399 18 C -0.163 4.163 19 C -0.035 4.035 20 C -0.561 4.561 21 H 0.090 0.910 22 C -0.132 4.132 23 N -0.543 5.543 24 Si 0.703 3.297 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.185 1.185 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.041 0.959 50 H 0.036 0.964 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.348 2.919 20.342 23.476 hybrid contribution 0.001 -0.776 -0.049 0.778 sum 11.349 2.142 20.293 23.350 Atomic orbital electron populations 1.22032 0.95274 1.01485 1.01417 1.22078 0.96824 0.93914 1.03090 1.20131 0.87545 0.94377 0.89865 0.89765 1.20360 0.95952 0.99532 0.93539 1.21084 0.94819 0.97938 0.97447 1.21192 0.93772 1.00064 0.98756 1.21125 0.99590 1.00726 0.92832 1.21058 0.94844 1.01025 0.97284 1.20947 0.93564 1.00976 0.97942 1.48057 1.60346 1.06546 1.19438 1.21629 0.97011 0.79657 1.02367 1.21590 0.98522 0.96487 0.97044 1.21967 1.01350 1.01821 0.95620 1.21772 1.01622 0.94667 1.02217 1.21371 0.76758 0.88426 0.83269 1.90628 1.55619 1.14200 1.79453 1.21760 1.00729 1.00217 0.93602 1.19361 0.96643 0.94399 0.93059 1.21108 1.39400 0.94959 1.00655 0.91025 1.24962 0.94535 0.98356 0.95309 1.69911 1.40977 1.35803 1.07585 0.86815 0.79473 0.86339 0.77026 1.20290 1.21515 1.18535 0.93370 0.94748 0.90746 0.87447 0.93467 0.85984 0.86165 0.86411 0.86356 0.86354 0.90759 0.89805 0.90304 0.93054 0.92901 0.91963 0.92102 0.92515 0.92854 0.89801 0.89869 0.95943 0.96361 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.68 37.16 0.32 -1.79 16 2 C -0.12 -1.70 4.86 -26.73 -0.13 -1.83 16 3 C 0.18 2.26 1.81 -69.08 -0.13 2.14 16 4 H 0.08 0.90 5.85 -51.93 -0.30 0.60 16 5 C -0.09 -1.13 4.93 -104.63 -0.52 -1.65 16 6 C -0.09 -1.28 9.31 -39.58 -0.37 -1.65 16 7 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 8 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 9 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 10 C -0.12 -1.21 9.67 -39.58 -0.38 -1.59 16 11 N -0.61 -8.06 1.55 -167.43 -0.26 -8.32 16 12 C 0.12 1.29 4.62 -4.04 -0.02 1.27 16 13 C -0.12 -1.21 3.04 -90.62 -0.28 -1.49 16 14 C -0.15 -1.42 8.47 37.16 0.31 -1.10 16 15 C -0.14 -1.32 9.19 37.15 0.34 -0.98 16 16 C 0.51 8.69 4.60 -10.99 -0.05 8.64 16 17 O -0.52 -10.26 10.31 5.56 0.06 -10.21 16 18 C -0.12 -2.33 4.20 -27.88 -0.12 -2.45 16 19 C 0.00 0.08 3.33 -27.88 -0.09 -0.01 16 20 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 21 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 24 Si 0.88 22.47 27.47 -169.99 -4.67 17.81 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.43 7.10 -51.93 -0.37 0.06 16 30 H 0.07 1.27 4.71 -51.93 -0.24 1.02 16 31 H 0.11 1.82 5.84 -52.07 -0.30 1.51 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.12 1.90 6.52 -52.49 -0.34 1.56 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 1.00 8.05 -52.49 -0.42 0.58 16 38 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 39 H 0.08 0.96 6.55 -51.93 -0.34 0.62 16 40 H 0.08 0.98 7.08 -51.93 -0.37 0.61 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.64 4.49 -51.93 -0.23 0.41 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 1.50 6.96 -51.93 -0.36 1.14 16 48 H 0.08 1.49 7.46 -51.93 -0.39 1.10 16 49 H 0.02 0.57 7.16 -51.92 -0.37 0.20 16 50 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 51 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -31.55 386.84 -9.66 -41.21 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.67 Total: 1.56 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.72 Total: -20.77 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.51 Total: -35.43 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.06 Total: -10.21 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.55 -9.66 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361777836.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.389 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds