Wall clock time and date at job start Tue Mar 31 2020 13:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 H 1.08999 * 109.46974 * 66.24728 * 3 2 1 5 5 C 1.50696 * 109.46941 * 186.24407 * 3 2 1 6 6 C 1.38235 * 120.00136 * 81.53626 * 5 3 2 7 7 C 1.38233 * 120.00181 * 179.78566 * 6 5 3 8 8 C 1.38238 * 119.99707 * 0.44018 * 7 6 5 9 9 C 1.38239 * 120.00251 * 359.81570 * 8 7 6 10 10 C 1.38234 * 119.99642 * 359.97069 * 9 8 7 11 11 N 1.46497 * 109.47083 * 306.24301 * 3 2 1 12 12 C 1.46500 * 119.99789 * 158.40593 * 11 3 2 13 13 C 1.53005 * 109.47419 * 266.74532 * 12 11 3 14 14 C 1.53004 * 109.46481 * 66.13732 * 13 12 11 15 15 C 1.52995 * 109.47348 * 186.13864 * 13 12 11 16 16 C 1.34777 * 120.00159 * 338.13309 * 11 3 2 17 17 O 1.21278 * 119.99937 * 2.00398 * 16 11 3 18 18 C 1.50700 * 119.99760 * 182.00379 * 16 11 3 19 19 C 1.52999 * 109.46924 * 179.97438 * 18 16 11 20 20 C 1.50704 * 109.47564 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99505 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00356 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99774 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99783 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46887 * 90.00240 * 24 22 20 26 26 H 1.48506 * 109.46651 * 210.00010 * 24 22 20 27 27 H 1.48494 * 109.47312 * 329.99709 * 24 22 20 28 28 H 1.08996 * 109.46869 * 180.73939 * 1 2 3 29 29 H 1.09001 * 109.46995 * 300.73520 * 1 2 3 30 30 H 1.09001 * 109.47278 * 60.73287 * 1 2 3 31 31 H 1.09004 * 109.46683 * 240.00101 * 2 1 3 32 32 H 1.08993 * 109.47395 * 120.00221 * 2 1 3 33 33 H 1.07996 * 119.99803 * 0.02562 * 6 5 3 34 34 H 1.08000 * 120.00463 * 180.27640 * 7 6 5 35 35 H 1.07999 * 120.00171 * 179.82875 * 8 7 6 36 36 H 1.08001 * 120.00194 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.99537 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.47332 * 26.74890 * 12 11 3 39 39 H 1.09000 * 109.47396 * 146.74530 * 12 11 3 40 40 H 1.08997 * 109.47114 * 306.14590 * 13 12 11 41 41 H 1.08998 * 109.47335 * 62.32669 * 14 13 12 42 42 H 1.09005 * 109.46472 * 182.32466 * 14 13 12 43 43 H 1.08995 * 109.47318 * 302.32199 * 14 13 12 44 44 H 1.08999 * 109.47205 * 60.00095 * 15 13 12 45 45 H 1.09003 * 109.47361 * 180.02562 * 15 13 12 46 46 H 1.08998 * 109.47024 * 299.99941 * 15 13 12 47 47 H 1.08999 * 109.47261 * 299.99705 * 18 16 11 48 48 H 1.08999 * 109.47398 * 60.00281 * 18 16 11 49 49 H 1.09008 * 109.47179 * 299.99952 * 19 18 16 50 50 H 1.09006 * 109.47552 * 59.99954 * 19 18 16 51 51 H 0.96996 * 119.99864 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7709 1.9230 0.9406 5 6 3.5390 1.4453 -0.1545 6 6 4.1048 1.3134 -1.4089 7 6 5.4798 1.3204 -1.5511 8 6 6.2892 1.4502 -0.4380 9 6 5.7235 1.5767 0.8170 10 6 4.3484 1.5742 0.9587 11 7 1.4329 2.1751 -1.1140 12 6 1.3642 3.6380 -1.0777 13 6 0.0201 4.0712 -0.4890 14 6 -0.0523 3.6506 0.9804 15 6 -0.1155 5.5916 -0.5915 16 6 0.9425 1.5035 -2.1746 17 8 0.9709 0.2912 -2.1906 18 6 0.3589 2.2591 -3.3406 19 6 -0.1215 1.2673 -4.4019 20 6 -0.7057 2.0228 -5.5677 21 1 -0.7321 3.1024 -5.5529 22 6 -1.2075 1.3357 -6.6527 23 7 -1.7168 1.9951 -7.6703 24 14 -1.1625 -0.5316 -6.6780 25 1 -2.4115 -1.0649 -6.0772 26 1 -1.0465 -1.0049 -8.0808 27 1 0.0062 -1.0092 -5.8962 28 1 -0.3633 -1.0276 0.0133 29 1 -0.3633 0.5252 0.8833 30 1 -0.3634 0.5024 -0.8965 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.4726 1.2088 -2.2781 34 1 5.9218 1.2219 -2.5316 35 1 7.3634 1.4529 -0.5487 36 1 6.3558 1.6777 1.6867 37 1 3.9065 1.6726 1.9392 38 1 2.1737 4.0246 -0.4584 39 1 1.4614 4.0316 -2.0895 40 1 -0.7893 3.5959 -1.0431 41 1 0.7318 4.1578 1.5425 42 1 -1.0258 3.9223 1.3885 43 1 0.0856 2.5721 1.0568 44 1 -0.0640 5.8912 -1.6383 45 1 -1.0729 5.9002 -0.1717 46 1 0.6939 6.0668 -0.0373 47 1 -0.4825 2.8617 -2.9986 48 1 1.1209 2.9095 -3.7701 49 1 0.7202 0.6650 -4.7439 50 1 -0.8834 0.6165 -3.9727 51 1 -2.0702 1.5118 -8.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361777836.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:02 Heat of formation + Delta-G solvation = -22.750112 kcal Electronic energy + Delta-G solvation = -28328.376665 eV Core-core repulsion = 24806.303520 eV Total energy + Delta-G solvation = -3522.073144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00697 -39.80624 -37.86147 -36.21413 -35.26592 -33.92719 -32.79962 -31.87163 -31.69959 -28.49623 -27.91064 -27.37485 -26.36532 -23.61736 -23.48773 -22.97749 -21.73972 -21.19332 -19.98506 -18.94725 -18.06963 -17.65126 -17.18646 -16.67791 -16.32506 -16.13839 -15.78060 -15.41407 -15.14467 -14.93898 -14.76641 -14.59527 -14.43553 -14.28340 -14.00064 -13.88697 -13.44122 -13.36462 -13.30892 -13.01911 -12.91965 -12.77909 -12.66891 -12.41330 -12.25528 -12.04089 -11.97305 -11.89822 -11.87502 -11.75292 -11.61950 -11.50662 -11.38250 -11.33945 -10.78832 -9.96425 -9.79190 -9.64717 -9.47756 -8.32500 -6.34965 0.43094 0.52197 1.30985 1.32943 1.47866 1.73183 2.07918 2.33308 2.91279 3.03364 3.64755 3.76193 3.94497 4.00050 4.02242 4.14576 4.18130 4.23003 4.29327 4.34172 4.37455 4.44317 4.47989 4.56610 4.62527 4.70397 4.73505 4.79041 4.81882 4.87701 4.89942 4.97623 5.02330 5.08441 5.13094 5.15937 5.17834 5.31053 5.34031 5.38708 5.43204 5.43896 5.52025 5.54872 5.58594 5.60613 5.63296 5.65688 5.92490 6.13682 6.23215 6.48287 6.71281 7.30195 7.36530 8.83389 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.004378 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.901690 B = 6394.723094 C = 7359.902055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.188 3.812 4 H 0.112 0.888 5 C -0.103 4.103 6 C -0.119 4.119 7 C -0.135 4.135 8 C -0.125 4.125 9 C -0.120 4.120 10 C -0.113 4.113 11 N -0.596 5.596 12 C 0.113 3.887 13 C -0.114 4.114 14 C -0.146 4.146 15 C -0.141 4.141 16 C 0.516 3.484 17 O -0.553 6.553 18 C -0.117 4.117 19 C 0.011 3.989 20 C -0.527 4.527 21 H 0.047 0.953 22 C 0.016 3.984 23 N -0.943 5.943 24 Si 0.937 3.063 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.262 1.262 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.008 0.992 50 H 0.008 0.992 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.110 3.926 23.990 27.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C 0.086 3.914 4 H 0.130 0.870 5 C -0.104 4.104 6 C -0.138 4.138 7 C -0.153 4.153 8 C -0.143 4.143 9 C -0.138 4.138 10 C -0.131 4.131 11 N -0.328 5.328 12 C -0.009 4.009 13 C -0.134 4.134 14 C -0.203 4.203 15 C -0.199 4.199 16 C 0.306 3.694 17 O -0.433 6.433 18 C -0.156 4.156 19 C -0.026 4.026 20 C -0.565 4.565 21 H 0.065 0.935 22 C -0.182 4.182 23 N -0.584 5.584 24 Si 0.762 3.238 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.108 0.892 49 H 0.026 0.974 50 H 0.026 0.974 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.039 3.276 23.819 27.351 hybrid contribution -0.468 -0.796 -1.093 1.431 sum 12.571 2.480 22.726 26.089 Atomic orbital electron populations 1.21941 0.95846 1.00909 1.01004 1.21944 0.96232 0.95029 1.02303 1.20238 0.87765 0.93394 0.90051 0.86992 1.20335 0.95785 1.00550 0.93702 1.20964 0.95352 1.00233 0.97206 1.21324 0.93410 1.00697 0.99842 1.21439 1.00694 0.99590 0.92532 1.21465 0.95021 0.99301 0.98013 1.21249 0.93822 0.99739 0.98294 1.47915 1.58885 1.07454 1.18532 1.21822 0.98368 0.78080 1.02657 1.21533 0.96922 0.97274 0.97639 1.21931 1.02366 1.01370 0.94668 1.21741 1.02583 0.93581 1.02007 1.20836 0.77075 0.87778 0.83713 1.90645 1.57156 1.15275 1.80183 1.21549 1.01375 0.99186 0.93537 1.19168 0.95497 0.94801 0.93182 1.21415 1.38948 0.94211 1.01927 0.93481 1.25766 0.94408 1.02904 0.95091 1.70023 1.42294 1.37668 1.08419 0.85853 0.79588 0.80961 0.77448 1.19386 1.20390 1.18631 0.94166 0.92519 0.93501 0.90876 0.91490 0.89210 0.86021 0.84072 0.83235 0.83601 0.88464 0.90584 0.92872 0.91093 0.92532 0.92817 0.93033 0.92116 0.91056 0.89040 0.89247 0.97370 0.97369 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.68 71.98 0.62 -3.39 16 2 C -0.12 -3.19 4.86 30.60 0.15 -3.04 16 3 C 0.19 4.29 1.81 44.25 0.08 4.37 16 4 H 0.11 1.97 5.85 -2.39 -0.01 1.96 16 5 C -0.10 -2.32 4.93 -19.87 -0.10 -2.42 16 6 C -0.12 -3.22 9.31 22.27 0.21 -3.01 16 7 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 8 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 9 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 10 C -0.11 -1.93 9.67 22.27 0.22 -1.71 16 11 N -0.60 -15.47 1.55 -802.00 -1.24 -16.72 16 12 C 0.11 2.35 4.62 86.38 0.40 2.75 16 13 C -0.11 -2.21 3.04 -10.79 -0.03 -2.24 16 14 C -0.15 -2.34 8.47 71.98 0.61 -1.73 16 15 C -0.14 -2.32 9.19 71.98 0.66 -1.65 16 16 C 0.52 18.11 4.60 87.66 0.40 18.51 16 17 O -0.55 -22.70 10.31 -3.02 -0.03 -22.73 16 18 C -0.12 -4.59 4.20 29.85 0.13 -4.47 16 19 C 0.01 0.58 3.33 29.85 0.10 0.68 16 20 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 21 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 22 C 0.02 0.96 5.47 84.65 0.46 1.42 16 23 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 24 Si 0.94 47.39 27.47 68.60 1.88 49.28 16 25 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 27 H -0.26 -13.19 6.54 99.48 0.65 -12.54 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.33 7.10 -2.39 -0.02 1.31 16 30 H 0.05 1.62 4.71 -2.39 -0.01 1.61 16 31 H 0.07 2.55 5.84 -4.60 -0.03 2.52 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 2.97 6.52 -2.91 -0.02 2.95 16 34 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.15 1.68 8.05 -2.91 -0.02 1.66 16 38 H 0.10 1.63 8.05 -2.39 -0.02 1.61 16 39 H 0.08 1.71 6.55 -2.39 -0.02 1.70 16 40 H 0.05 1.31 7.08 -2.39 -0.02 1.29 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.05 0.95 4.49 -2.39 -0.01 0.94 16 44 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.09 3.41 6.96 -2.39 -0.02 3.40 16 48 H 0.09 3.35 7.46 -2.39 -0.02 3.33 16 49 H 0.01 0.42 7.16 -2.38 -0.02 0.40 16 50 H 0.01 0.42 7.53 -2.38 -0.02 0.40 16 51 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -71.05 386.84 6.56 -64.50 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.82 Total: 18.06 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 4.83 Total: -33.07 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -0.94 Total: -76.04 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.03 Total: -22.73 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.88 Total: 49.28 kcal Total: -71.05 6.56 -64.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361777836.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.747 kcal (2) G-P(sol) polarization free energy of solvation -71.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds