Wall clock time and date at job start Tue Mar 31 2020 11:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99716 * 2 1 4 4 C 1.38756 * 120.02475 * 359.97438 * 3 2 1 5 5 C 1.38210 * 120.02287 * 180.02562 * 4 3 2 6 6 C 1.38340 * 119.69378 * 359.97438 * 5 4 3 7 7 C 1.37355 * 120.38466 * 0.07241 * 6 5 4 8 8 C 1.38195 * 120.37697 * 359.90094 * 7 6 5 9 9 C 1.51474 * 119.85183 * 179.97438 * 7 6 5 10 10 C 1.53194 * 108.29001 * 290.57343 * 9 7 6 11 11 N 1.45381 * 110.85948 * 84.81796 * 10 9 7 12 12 C 1.46898 * 110.99834 * 58.76953 * 11 10 9 13 13 C 1.52998 * 109.47303 * 60.05309 * 12 11 10 14 14 C 1.52999 * 109.47153 * 275.15128 * 13 12 11 15 15 C 1.52995 * 109.47324 * 35.15282 * 13 12 11 16 16 C 1.53000 * 109.47189 * 155.15041 * 13 12 11 17 17 C 1.50701 * 109.47146 * 179.97438 * 16 13 12 18 18 H 1.07998 * 120.00267 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99873 * 180.02562 * 17 16 13 20 20 N 1.31522 * 119.99670 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00332 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47451 * 89.99675 * 21 19 17 23 23 H 1.48503 * 109.47240 * 210.00121 * 21 19 17 24 24 H 1.48504 * 109.46743 * 329.99944 * 21 19 17 25 25 C 1.45377 * 116.67175 * 290.27595 * 11 10 9 26 26 C 1.51518 * 119.78153 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.46662 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47432 * 300.00092 * 1 2 3 29 29 H 1.08991 * 109.47145 * 60.00282 * 1 2 3 30 30 H 1.07996 * 119.98857 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.15626 * 180.02562 * 5 4 3 32 32 H 1.07993 * 120.21553 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.70251 * 170.87144 * 9 7 6 34 34 H 1.08997 * 109.69934 * 50.27272 * 9 7 6 35 35 H 1.08993 * 109.19873 * 324.46218 * 10 9 7 36 36 H 1.09002 * 109.16461 * 205.14647 * 10 9 7 37 37 H 1.09008 * 109.47116 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47520 * 300.04892 * 12 11 10 39 39 H 1.09002 * 109.46669 * 51.68590 * 14 13 12 40 40 H 1.08997 * 109.47310 * 171.68055 * 14 13 12 41 41 H 1.09003 * 109.47297 * 291.68233 * 14 13 12 42 42 H 1.09006 * 109.47423 * 53.47505 * 15 13 12 43 43 H 1.09000 * 109.47604 * 173.47821 * 15 13 12 44 44 H 1.08997 * 109.47441 * 293.47937 * 15 13 12 45 45 H 1.08999 * 109.47640 * 300.00188 * 16 13 12 46 46 H 1.09008 * 109.47063 * 60.00208 * 16 13 12 47 47 H 0.96994 * 119.99405 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.19622 * 190.03681 * 25 11 10 49 49 H 1.08999 * 109.19960 * 309.37618 * 25 11 10 50 50 H 1.09008 * 109.73178 * 129.80544 * 26 6 5 51 51 H 1.09001 * 109.67985 * 9.20748 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3749 -0.0005 5 6 1.9181 3.6064 -0.0011 6 6 3.3000 3.6714 -0.0005 7 6 4.0497 2.5205 -0.0010 8 6 3.4321 1.2842 0.0001 9 6 5.5620 2.6058 -0.0010 10 6 6.0132 3.1437 -1.3625 11 7 5.9773 4.5969 -1.3828 12 6 6.8423 5.1595 -0.3372 13 6 8.2841 4.7022 -0.5674 14 6 8.4906 3.3264 0.0693 15 6 8.5578 4.6150 -2.0701 16 6 9.2458 5.7080 0.0685 17 6 10.6660 5.2573 -0.1577 18 1 10.8629 4.3450 -0.7010 19 6 11.7138 6.0097 0.3291 20 7 12.9532 5.6166 0.1312 21 14 11.3733 7.5873 1.2695 22 1 11.2451 7.2828 2.7172 23 1 12.4937 8.5395 1.0612 24 1 10.1102 8.1939 0.7775 25 6 4.6629 5.2176 -1.3613 26 6 3.9899 5.0204 -0.0005 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 0.2122 2.3186 -0.0014 31 1 1.3324 4.5137 -0.0011 32 1 4.0241 0.3810 0.0002 33 1 5.9860 1.6148 0.1615 34 1 5.8919 3.2810 0.7885 35 1 5.3511 2.7579 -2.1376 36 1 7.0310 2.8075 -1.5607 37 1 6.7964 6.2480 -0.3744 38 1 6.5032 4.8144 0.6396 39 1 7.7111 2.6464 -0.2744 40 1 9.4665 2.9356 -0.2186 41 1 8.4413 3.4171 1.1544 42 1 8.2997 5.5631 -2.5421 43 1 9.6140 4.4025 -2.2354 44 1 7.9545 3.8174 -2.5036 45 1 9.0987 6.6882 -0.3850 46 1 9.0509 5.7702 1.1392 47 1 13.6903 6.1457 0.4740 48 1 4.7670 6.2845 -1.5587 49 1 4.0418 4.7686 -2.1364 50 1 4.7420 5.0491 0.7880 51 1 3.2550 5.8086 0.1632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375536115.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:36 Heat of formation + Delta-G solvation = 0.780648 kcal Electronic energy + Delta-G solvation = -27813.155068 eV Core-core repulsion = 24292.102294 eV Total energy + Delta-G solvation = -3521.052774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89369 -39.59061 -37.66970 -35.31339 -33.29149 -32.33901 -31.42895 -30.20971 -27.81424 -27.65733 -26.91728 -26.46920 -25.40452 -23.88040 -22.67460 -22.48751 -20.27127 -20.06524 -18.17226 -17.52445 -16.83728 -16.66245 -16.00233 -15.81796 -15.55654 -15.26626 -14.59294 -14.39671 -14.14461 -14.03140 -13.52127 -13.42634 -13.28992 -12.97361 -12.72202 -12.53742 -12.46335 -12.08218 -11.95146 -11.81235 -11.58296 -11.40870 -11.21425 -11.14496 -11.00219 -10.84631 -10.82159 -10.61654 -10.39976 -10.33584 -10.16997 -9.72708 -9.61734 -9.11002 -8.99054 -8.86270 -8.46022 -8.40025 -7.63103 -5.96554 -3.92132 1.17977 1.28298 3.02521 3.34381 3.42260 3.45777 3.56981 4.18512 4.51392 4.54191 4.56216 4.69891 4.79299 4.81098 5.04075 5.08629 5.11888 5.15762 5.22577 5.27698 5.36599 5.44470 5.45730 5.50364 5.59519 5.68806 5.73826 5.80711 5.87144 5.89840 6.05747 6.09931 6.15124 6.19934 6.24611 6.32782 6.38814 6.47215 6.57996 6.61683 6.63961 6.77384 6.88723 7.15378 7.19120 7.21313 7.27280 7.36728 7.42563 7.57219 7.62184 7.89933 8.63886 9.09987 9.66911 11.16680 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027648 B = 0.002877 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.481588 B = 9729.092912 C =10061.189210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.214 4.214 5 C -0.077 4.077 6 C -0.113 4.113 7 C -0.034 4.034 8 C -0.148 4.148 9 C -0.126 4.126 10 C 0.061 3.939 11 N -0.548 5.548 12 C 0.062 3.938 13 C -0.048 4.048 14 C -0.150 4.150 15 C -0.117 4.117 16 C -0.003 4.003 17 C -0.504 4.504 18 H 0.077 0.923 19 C 0.063 3.937 20 N -0.907 5.907 21 Si 0.875 3.125 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.266 1.266 25 C 0.076 3.924 26 C -0.120 4.120 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.015 0.985 46 H 0.007 0.993 47 H 0.261 0.739 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.860 -6.960 -1.026 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.233 4.233 5 C -0.095 4.095 6 C -0.113 4.113 7 C -0.034 4.034 8 C -0.166 4.166 9 C -0.165 4.165 10 C -0.067 4.067 11 N -0.269 5.269 12 C -0.065 4.065 13 C -0.048 4.048 14 C -0.207 4.207 15 C -0.174 4.174 16 C -0.041 4.041 17 C -0.542 4.542 18 H 0.095 0.905 19 C -0.137 4.137 20 N -0.547 5.547 21 Si 0.703 3.297 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.191 1.191 25 C -0.053 4.053 26 C -0.159 4.159 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.025 0.975 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.099 0.901 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.430 -6.984 -1.435 26.411 hybrid contribution -0.838 0.811 1.487 1.889 sum -26.268 -6.174 0.052 26.983 Atomic orbital electron populations 1.23019 0.78640 1.03757 1.01227 1.86067 1.21180 1.27146 1.88935 1.19024 0.92282 0.84004 0.97152 1.21158 0.99690 0.92409 1.10041 1.20845 0.93780 0.96843 0.98074 1.19655 0.93199 0.95167 1.03276 1.19618 0.96192 0.91514 0.96091 1.20362 0.91150 0.98093 1.07043 1.21760 0.90041 1.03176 1.01523 1.22248 1.03182 0.87000 0.94224 1.59691 1.11243 1.06032 1.49930 1.22368 0.93402 0.98999 0.91710 1.20410 0.91696 0.96067 0.96638 1.22329 1.01902 0.96700 0.99757 1.21704 1.00993 1.00393 0.94340 1.19645 0.95338 0.94295 0.94774 1.21147 0.88386 1.09669 1.35004 0.90456 1.25025 0.95129 0.97511 0.96020 1.69914 0.98376 1.39281 1.47080 0.86854 0.78017 0.84278 0.80549 1.20588 1.21633 1.19100 1.21745 0.88959 0.99757 0.94810 1.21553 1.00141 0.93376 1.00850 0.88368 0.92805 0.92766 0.85846 0.85915 0.85205 0.90358 0.89265 0.91752 0.87435 0.91359 0.94805 0.92797 0.91842 0.93923 0.93898 0.92251 0.93760 0.96716 0.97508 0.92959 0.90610 0.91315 0.90147 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.42 10.50 -19.43 -0.20 -3.63 16 3 C 0.12 1.38 6.69 -39.18 -0.26 1.12 16 4 C -0.21 -2.18 9.04 -39.40 -0.36 -2.53 16 5 C -0.08 -0.80 9.69 -39.55 -0.38 -1.18 16 6 C -0.11 -1.30 5.01 -104.50 -0.52 -1.82 16 7 C -0.03 -0.41 5.00 -104.58 -0.52 -0.94 16 8 C -0.15 -1.77 9.63 -39.39 -0.38 -2.15 16 9 C -0.13 -1.54 3.80 -27.40 -0.10 -1.65 16 10 C 0.06 0.78 4.38 -4.54 -0.02 0.76 16 11 N -0.55 -7.45 3.54 -237.00 -0.84 -8.29 16 12 C 0.06 0.97 3.69 -3.83 -0.01 0.95 16 13 C -0.05 -0.89 0.53 -154.51 -0.08 -0.97 16 14 C -0.15 -2.66 7.00 37.16 0.26 -2.40 16 15 C -0.12 -2.18 7.56 37.15 0.28 -1.90 16 16 C 0.00 -0.06 2.97 -27.88 -0.08 -0.15 16 17 C -0.50 -13.80 8.21 -34.44 -0.28 -14.08 16 18 H 0.08 2.26 5.98 -52.49 -0.31 1.95 16 19 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 20 N -0.91 -27.81 13.96 55.43 0.77 -27.04 16 21 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 25 C 0.08 0.89 5.57 -4.60 -0.03 0.86 16 26 C -0.12 -1.32 5.38 -27.44 -0.15 -1.47 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 30 H 0.12 0.97 6.29 -52.49 -0.33 0.64 16 31 H 0.12 1.02 7.98 -52.49 -0.42 0.60 16 32 H 0.13 1.44 7.98 -52.49 -0.42 1.02 16 33 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 34 H 0.09 1.19 4.63 -51.93 -0.24 0.95 16 35 H 0.06 0.81 7.86 -51.93 -0.41 0.40 16 36 H 0.11 1.48 3.46 -51.93 -0.18 1.30 16 37 H 0.07 1.10 7.79 -51.92 -0.40 0.70 16 38 H 0.03 0.52 4.29 -51.93 -0.22 0.29 16 39 H 0.05 0.79 2.96 -51.93 -0.15 0.64 16 40 H 0.06 1.27 6.90 -51.93 -0.36 0.91 16 41 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.26 6.43 -51.93 -0.33 0.92 16 44 H 0.04 0.72 5.29 -51.93 -0.27 0.45 16 45 H 0.01 0.35 7.18 -51.93 -0.37 -0.02 16 46 H 0.01 0.16 7.57 -51.92 -0.39 -0.24 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 49 H 0.07 0.79 7.86 -51.93 -0.41 0.39 16 50 H 0.08 0.98 5.25 -51.92 -0.27 0.71 16 51 H 0.07 0.67 7.93 -51.93 -0.41 0.26 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -30.60 363.07 -9.18 -39.78 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.96 Total: 1.25 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -1.75 Total: -24.64 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.07 Total: -35.33 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.20 Total: -3.63 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.60 -9.18 -39.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375536115.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.563 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds