Wall clock time and date at job start Tue Mar 31 2020 11:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99716 * 2 1 4 4 C 1.38756 * 120.02475 * 359.97438 * 3 2 1 5 5 C 1.38210 * 120.02287 * 180.02562 * 4 3 2 6 6 C 1.38340 * 119.69378 * 359.97438 * 5 4 3 7 7 C 1.37355 * 120.38466 * 0.07241 * 6 5 4 8 8 C 1.38195 * 120.37697 * 359.90094 * 7 6 5 9 9 C 1.51474 * 119.85183 * 179.97438 * 7 6 5 10 10 C 1.53194 * 108.29001 * 290.57343 * 9 7 6 11 11 N 1.45381 * 110.85948 * 84.81796 * 10 9 7 12 12 C 1.46898 * 110.99834 * 58.76953 * 11 10 9 13 13 C 1.52998 * 109.47303 * 60.05309 * 12 11 10 14 14 C 1.52999 * 109.47153 * 275.15128 * 13 12 11 15 15 C 1.52995 * 109.47324 * 35.15282 * 13 12 11 16 16 C 1.53000 * 109.47189 * 155.15041 * 13 12 11 17 17 C 1.50701 * 109.47146 * 179.97438 * 16 13 12 18 18 H 1.07998 * 120.00267 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99873 * 180.02562 * 17 16 13 20 20 N 1.31522 * 119.99670 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00332 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47451 * 89.99675 * 21 19 17 23 23 H 1.48503 * 109.47240 * 210.00121 * 21 19 17 24 24 H 1.48504 * 109.46743 * 329.99944 * 21 19 17 25 25 C 1.45377 * 116.67175 * 290.27595 * 11 10 9 26 26 C 1.51518 * 119.78153 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.46662 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47432 * 300.00092 * 1 2 3 29 29 H 1.08991 * 109.47145 * 60.00282 * 1 2 3 30 30 H 1.07996 * 119.98857 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.15626 * 180.02562 * 5 4 3 32 32 H 1.07993 * 120.21553 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.70251 * 170.87144 * 9 7 6 34 34 H 1.08997 * 109.69934 * 50.27272 * 9 7 6 35 35 H 1.08993 * 109.19873 * 324.46218 * 10 9 7 36 36 H 1.09002 * 109.16461 * 205.14647 * 10 9 7 37 37 H 1.09008 * 109.47116 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47520 * 300.04892 * 12 11 10 39 39 H 1.09002 * 109.46669 * 51.68590 * 14 13 12 40 40 H 1.08997 * 109.47310 * 171.68055 * 14 13 12 41 41 H 1.09003 * 109.47297 * 291.68233 * 14 13 12 42 42 H 1.09006 * 109.47423 * 53.47505 * 15 13 12 43 43 H 1.09000 * 109.47604 * 173.47821 * 15 13 12 44 44 H 1.08997 * 109.47441 * 293.47937 * 15 13 12 45 45 H 1.08999 * 109.47640 * 300.00188 * 16 13 12 46 46 H 1.09008 * 109.47063 * 60.00208 * 16 13 12 47 47 H 0.96994 * 119.99405 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.19622 * 190.03681 * 25 11 10 49 49 H 1.08999 * 109.19960 * 309.37618 * 25 11 10 50 50 H 1.09008 * 109.73178 * 129.80544 * 26 6 5 51 51 H 1.09001 * 109.67985 * 9.20748 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3749 -0.0005 5 6 1.9181 3.6064 -0.0011 6 6 3.3000 3.6714 -0.0005 7 6 4.0497 2.5205 -0.0010 8 6 3.4321 1.2842 0.0001 9 6 5.5620 2.6058 -0.0010 10 6 6.0132 3.1437 -1.3625 11 7 5.9773 4.5969 -1.3828 12 6 6.8423 5.1595 -0.3372 13 6 8.2841 4.7022 -0.5674 14 6 8.4906 3.3264 0.0693 15 6 8.5578 4.6150 -2.0701 16 6 9.2458 5.7080 0.0685 17 6 10.6660 5.2573 -0.1577 18 1 10.8629 4.3450 -0.7010 19 6 11.7138 6.0097 0.3291 20 7 12.9532 5.6166 0.1312 21 14 11.3733 7.5873 1.2695 22 1 11.2451 7.2828 2.7172 23 1 12.4937 8.5395 1.0612 24 1 10.1102 8.1939 0.7775 25 6 4.6629 5.2176 -1.3613 26 6 3.9899 5.0204 -0.0005 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 0.2122 2.3186 -0.0014 31 1 1.3324 4.5137 -0.0011 32 1 4.0241 0.3810 0.0002 33 1 5.9860 1.6148 0.1615 34 1 5.8919 3.2810 0.7885 35 1 5.3511 2.7579 -2.1376 36 1 7.0310 2.8075 -1.5607 37 1 6.7964 6.2480 -0.3744 38 1 6.5032 4.8144 0.6396 39 1 7.7111 2.6464 -0.2744 40 1 9.4665 2.9356 -0.2186 41 1 8.4413 3.4171 1.1544 42 1 8.2997 5.5631 -2.5421 43 1 9.6140 4.4025 -2.2354 44 1 7.9545 3.8174 -2.5036 45 1 9.0987 6.6882 -0.3850 46 1 9.0509 5.7702 1.1392 47 1 13.6903 6.1457 0.4740 48 1 4.7670 6.2845 -1.5587 49 1 4.0418 4.7686 -2.1364 50 1 4.7420 5.0491 0.7880 51 1 3.2550 5.8086 0.1632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375536115.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:35 Heat of formation + Delta-G solvation = -16.211175 kcal Electronic energy + Delta-G solvation = -27813.891888 eV Core-core repulsion = 24292.102294 eV Total energy + Delta-G solvation = -3521.789595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81042 -40.52445 -38.67794 -36.63379 -34.45344 -34.06632 -32.48419 -31.10022 -29.53469 -28.61585 -27.94334 -27.80631 -26.51374 -24.78845 -24.42657 -23.42533 -21.27111 -21.06009 -19.43255 -18.80118 -18.52154 -17.64876 -16.89499 -16.63868 -16.55814 -16.27847 -16.15139 -15.54419 -15.28167 -15.04015 -14.87745 -14.64213 -14.37123 -14.23042 -14.16808 -13.74901 -13.48513 -13.25771 -13.14274 -12.87577 -12.74433 -12.64582 -12.51739 -12.40202 -12.26030 -12.08831 -11.89134 -11.82269 -11.81151 -11.68230 -11.65590 -11.44091 -11.20393 -10.78773 -10.66471 -10.61173 -9.85708 -9.26933 -8.61736 -8.18781 -6.18350 0.36935 0.46595 1.37202 1.39267 1.50375 2.37937 2.41994 2.75203 3.11497 3.16508 3.68515 3.81326 3.94876 4.09971 4.15676 4.20653 4.23869 4.26669 4.31844 4.33983 4.38304 4.44385 4.48240 4.58152 4.61497 4.66952 4.69807 4.73656 4.81652 4.92277 4.96138 5.00719 5.03711 5.06892 5.11967 5.17540 5.23488 5.25512 5.31032 5.36257 5.44453 5.47167 5.52938 5.62231 5.71701 5.76161 5.83253 5.85472 5.88281 6.30452 6.46463 6.47088 6.56921 6.89219 7.43805 8.97583 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027648 B = 0.002877 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.481588 B = 9729.092912 C =10061.189210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.213 4.213 5 C -0.077 4.077 6 C -0.124 4.124 7 C -0.044 4.044 8 C -0.166 4.166 9 C -0.121 4.121 10 C 0.065 3.935 11 N -0.553 5.553 12 C 0.075 3.925 13 C -0.046 4.046 14 C -0.144 4.144 15 C -0.107 4.107 16 C -0.001 4.001 17 C -0.499 4.499 18 H 0.043 0.957 19 C -0.002 4.002 20 N -0.956 5.956 21 Si 0.940 3.060 22 H -0.272 1.272 23 H -0.290 1.290 24 H -0.247 1.247 25 C 0.077 3.923 26 C -0.113 4.113 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.022 0.978 44 H 0.067 0.933 45 H 0.013 0.987 46 H 0.010 0.990 47 H 0.261 0.739 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.594 -6.016 -0.586 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.125 4.125 7 C -0.044 4.044 8 C -0.184 4.184 9 C -0.160 4.160 10 C -0.063 4.063 11 N -0.275 5.275 12 C -0.053 4.053 13 C -0.047 4.047 14 C -0.200 4.200 15 C -0.165 4.165 16 C -0.039 4.039 17 C -0.537 4.537 18 H 0.061 0.939 19 C -0.197 4.197 20 N -0.599 5.599 21 Si 0.765 3.235 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.171 1.171 25 C -0.050 4.050 26 C -0.152 4.152 27 H 0.135 0.865 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.041 0.959 44 H 0.086 0.914 45 H 0.031 0.969 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -29.200 -6.049 -0.999 29.836 hybrid contribution 0.244 0.379 1.286 1.363 sum -28.955 -5.670 0.286 29.507 Atomic orbital electron populations 1.23312 0.76551 1.05428 1.02176 1.86043 1.23420 1.27060 1.88852 1.19192 0.92341 0.84837 0.97113 1.21451 1.00940 0.91860 1.08937 1.21148 0.93486 0.97876 0.96981 1.19798 0.93898 0.95046 1.03724 1.19597 0.95841 0.91974 0.97032 1.20475 0.91901 0.98147 1.07924 1.21652 0.90740 1.03038 1.00566 1.22147 1.02452 0.86738 0.94929 1.59622 1.12402 1.06336 1.49125 1.22091 0.91412 0.98943 0.92808 1.20333 0.93054 0.95231 0.96036 1.22283 1.01228 0.97018 0.99487 1.21597 0.98990 1.01119 0.94746 1.19620 0.93739 0.95291 0.95278 1.21445 0.90815 1.08181 1.33280 0.93869 1.25940 0.94861 1.01400 0.97516 1.70075 0.99527 1.41135 1.49137 0.85799 0.78487 0.79878 0.79309 1.19709 1.21637 1.17089 1.21781 0.87774 0.99968 0.95520 1.21482 1.00211 0.93818 0.99723 0.86536 0.91808 0.91733 0.83469 0.83533 0.85372 0.89964 0.90238 0.91131 0.88762 0.91368 0.93998 0.89614 0.95032 0.94248 0.93989 0.95861 0.91435 0.96860 0.97155 0.93016 0.89858 0.90843 0.91367 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.73 10.50 -92.45 -0.97 -7.70 16 3 C 0.11 2.34 6.69 22.53 0.15 2.49 16 4 C -0.21 -3.72 9.04 22.39 0.20 -3.51 16 5 C -0.08 -1.34 9.69 22.29 0.22 -1.13 16 6 C -0.12 -2.55 5.01 -19.79 -0.10 -2.65 16 7 C -0.04 -1.00 5.00 -19.84 -0.10 -1.10 16 8 C -0.17 -3.80 9.63 22.40 0.22 -3.58 16 9 C -0.12 -2.80 3.80 30.16 0.11 -2.69 16 10 C 0.06 1.57 4.38 86.65 0.38 1.95 16 11 N -0.55 -13.94 3.54 -903.72 -3.20 -17.14 16 12 C 0.07 2.20 3.69 86.30 0.32 2.51 16 13 C -0.05 -1.70 0.53 -52.18 -0.03 -1.73 16 14 C -0.14 -5.14 7.00 71.98 0.50 -4.64 16 15 C -0.11 -4.02 7.56 71.98 0.54 -3.48 16 16 C 0.00 -0.07 2.97 29.85 0.09 0.02 16 17 C -0.50 -28.15 8.21 25.60 0.21 -27.94 16 18 H 0.04 2.68 5.98 -2.91 -0.02 2.66 16 19 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 20 N -0.96 -60.71 13.96 21.45 0.30 -60.41 16 21 Si 0.94 44.99 27.47 68.60 1.88 46.87 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 25 C 0.08 1.59 5.57 86.62 0.48 2.07 16 26 C -0.11 -2.16 5.38 30.14 0.16 -2.00 16 27 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 29 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 30 H 0.15 1.76 6.29 -2.91 -0.02 1.74 16 31 H 0.15 1.80 7.98 -2.91 -0.02 1.77 16 32 H 0.13 2.82 7.98 -2.91 -0.02 2.80 16 33 H 0.08 1.80 7.66 -2.39 -0.02 1.78 16 34 H 0.08 2.00 4.63 -2.39 -0.01 1.99 16 35 H 0.07 1.65 7.86 -2.39 -0.02 1.63 16 36 H 0.09 2.50 3.46 -2.39 -0.01 2.49 16 37 H 0.07 2.03 7.79 -2.38 -0.02 2.01 16 38 H 0.04 1.19 4.29 -2.39 -0.01 1.18 16 39 H 0.09 2.50 2.96 -2.39 -0.01 2.49 16 40 H 0.03 1.30 6.90 -2.39 -0.02 1.29 16 41 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 42 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.02 1.01 6.43 -2.39 -0.02 0.99 16 44 H 0.07 2.19 5.29 -2.39 -0.01 2.18 16 45 H 0.01 0.61 7.18 -2.39 -0.02 0.59 16 46 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 47 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 48 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 49 H 0.07 1.48 7.86 -2.39 -0.02 1.46 16 50 H 0.07 1.49 5.25 -2.38 -0.01 1.48 16 51 H 0.09 1.37 7.93 -2.39 -0.02 1.36 16 Total: -1.00 -67.76 363.07 3.83 -63.93 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.88 Total: 18.19 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 4.94 Total: -43.74 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -2.90 Total: -77.55 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.97 Total: -7.70 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -67.76 3.83 -63.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375536115.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.720 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds