Wall clock time and date at job start Tue Mar 31 2020 11:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 C 1.52992 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47278 * 185.79028 * 4 3 2 6 6 H 1.09001 * 109.46810 * 54.12765 * 5 4 3 7 7 C 1.53004 * 109.46862 * 294.13423 * 5 4 3 8 8 C 1.53001 * 109.46669 * 297.44761 * 7 5 4 9 9 C 1.53002 * 109.46835 * 182.12537 * 8 7 5 10 10 C 1.52996 * 109.47377 * 174.13079 * 5 4 3 11 11 N 1.46497 * 109.46894 * 184.99978 * 10 5 4 12 12 C 1.34783 * 120.00047 * 180.02562 * 11 10 5 13 13 O 1.21550 * 119.99547 * 359.97438 * 12 11 10 14 14 C 1.47876 * 120.00262 * 179.97438 * 12 11 10 15 15 C 1.39926 * 120.02309 * 359.72252 * 14 12 11 16 16 C 1.38332 * 120.35248 * 179.74075 * 15 14 12 17 17 C 1.37748 * 120.41865 * 0.56097 * 16 15 14 18 18 C 1.40757 * 120.03693 * 359.69583 * 17 16 15 19 19 C 1.41428 * 120.17758 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00379 * 331.86086 * 19 18 17 21 21 C 1.39942 * 120.00137 * 151.86444 * 19 18 17 22 22 N 1.30830 * 119.99663 * 346.25653 * 21 19 18 23 23 Si 1.86796 * 120.00108 * 166.25097 * 21 19 18 24 24 H 1.48500 * 109.47045 * 90.00305 * 23 21 19 25 25 H 1.48504 * 109.47153 * 209.99926 * 23 21 19 26 26 H 1.48497 * 109.47577 * 330.00370 * 23 21 19 27 27 C 1.38996 * 120.02920 * 179.97438 * 14 12 11 28 28 H 1.09004 * 109.47445 * 59.99987 * 1 2 3 29 29 H 1.08999 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47533 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47113 * 240.00032 * 2 1 3 32 32 H 1.09003 * 109.46703 * 120.00038 * 2 1 3 33 33 H 1.09001 * 109.47015 * 59.99972 * 3 2 1 34 34 H 1.08997 * 109.46931 * 299.99948 * 3 2 1 35 35 H 1.08994 * 109.47261 * 65.79049 * 4 3 2 36 36 H 1.08999 * 109.47635 * 305.78632 * 4 3 2 37 37 H 1.08993 * 109.47018 * 177.45124 * 7 5 4 38 38 H 1.08999 * 109.47378 * 57.44674 * 7 5 4 39 39 H 1.09004 * 109.47089 * 62.13381 * 8 7 5 40 40 H 1.08995 * 109.47742 * 302.12945 * 8 7 5 41 41 H 1.08997 * 109.47462 * 300.00171 * 9 8 7 42 42 H 1.08998 * 109.47247 * 60.00321 * 9 8 7 43 43 H 1.08998 * 109.47120 * 180.02562 * 9 8 7 44 44 H 1.08996 * 109.47035 * 305.00067 * 10 5 4 45 45 H 1.08996 * 109.47013 * 64.99922 * 10 5 4 46 46 H 0.96997 * 120.00512 * 0.02562 * 11 10 5 47 47 H 1.07993 * 119.82035 * 359.97438 * 15 14 12 48 48 H 1.08003 * 119.78719 * 180.27713 * 16 15 14 49 49 H 1.07993 * 119.98763 * 179.72080 * 17 16 15 50 50 H 0.97000 * 119.99745 * 180.02562 * 22 21 19 51 51 H 1.08005 * 120.19764 * 359.96230 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0800 2.8776 0.1462 6 1 3.6330 3.3342 1.0292 7 6 3.6945 3.6842 -1.0955 8 6 4.3733 3.0806 -2.3267 9 6 4.0305 3.9184 -3.5602 10 6 5.6028 2.8652 0.2938 11 7 6.0794 4.2261 0.5524 12 6 7.3966 4.4589 0.7174 13 8 8.1890 3.5395 0.6522 14 6 7.8778 5.8328 0.9778 15 6 6.9666 6.8924 1.0472 16 6 7.4087 8.1794 1.2957 17 6 8.7514 8.4348 1.4664 18 6 9.6835 7.3825 1.3947 19 6 11.0628 7.6413 1.5700 20 1 11.4680 8.6083 1.3110 21 6 11.9027 6.6443 2.0789 22 7 11.3890 5.5801 2.6405 23 14 13.7571 6.8328 1.9563 24 1 14.2647 7.5301 3.1651 25 1 14.3857 5.4909 1.8583 26 1 14.0951 7.6273 0.7481 27 6 9.2361 6.0734 1.1487 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 1.0209 -0.9364 36 1 3.9330 0.8416 0.8345 37 1 4.0180 4.7177 -0.9723 38 1 2.6127 3.6552 -1.2262 39 1 4.0210 2.0593 -2.4718 40 1 5.4533 3.0749 -2.1800 41 1 2.9504 3.9240 -3.7069 42 1 4.3827 4.9396 -3.4151 43 1 4.5137 3.4882 -4.4374 44 1 5.8819 2.2183 1.1255 45 1 6.0538 2.4907 -0.6250 46 1 5.4470 4.9598 0.6048 47 1 5.9122 6.7038 0.9097 48 1 6.6969 8.9897 1.3518 49 1 9.0893 9.4429 1.6556 50 1 11.9712 4.8892 2.9936 51 1 9.9433 5.2590 1.0925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440802145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:23 Heat of formation + Delta-G solvation = -67.276199 kcal Electronic energy + Delta-G solvation = -26280.803191 eV Core-core repulsion = 22756.799250 eV Total energy + Delta-G solvation = -3524.003940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.46711 -38.12775 -36.88303 -35.13485 -33.82583 -33.50581 -31.88247 -30.19131 -29.42879 -28.37660 -26.33805 -25.25004 -24.11530 -22.64888 -22.14839 -21.20768 -20.87763 -19.56076 -19.08706 -17.66534 -16.21682 -16.13544 -15.54486 -15.48304 -15.01714 -14.85361 -14.64267 -14.17022 -13.94726 -13.83104 -13.51936 -13.35567 -13.09916 -12.95095 -12.67592 -12.55915 -12.42930 -12.16790 -11.85871 -11.72068 -11.61056 -11.55284 -11.37945 -11.13906 -11.06529 -10.92431 -10.81017 -10.73482 -10.59313 -10.47632 -10.37288 -10.29887 -10.00350 -9.67532 -9.22276 -8.97976 -8.56936 -7.60642 -7.47876 -6.74914 -4.40827 2.23112 2.82763 3.09292 3.12207 3.16511 3.73616 3.90017 3.95296 4.49131 4.60654 4.66971 4.70335 4.81325 4.83059 4.92395 5.10668 5.19853 5.23962 5.36956 5.46855 5.48430 5.57044 5.60242 5.61252 5.65895 5.69090 5.70437 5.78076 5.80766 5.88371 5.93276 5.96479 6.00321 6.06588 6.12173 6.19135 6.24355 6.25703 6.27369 6.38147 6.72424 6.92300 7.01237 7.02972 7.23207 7.39750 7.70823 7.77663 7.93585 8.13432 8.21723 8.52391 8.82946 8.84897 9.00305 10.20152 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002485 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.881047 B =11265.474123 C =11682.814705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.100 4.100 6 H 0.076 0.924 7 C -0.115 4.115 8 C -0.130 4.130 9 C -0.151 4.151 10 C 0.123 3.877 11 N -0.735 5.735 12 C 0.563 3.437 13 O -0.548 6.548 14 C -0.129 4.129 15 C -0.214 4.214 16 C -0.100 4.100 17 C -0.208 4.208 18 C 0.099 3.901 19 C -0.462 4.462 20 H 0.080 0.920 21 C 0.072 3.928 22 N -0.790 5.790 23 Si 0.911 3.089 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.087 4.087 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.284 0.716 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 -7.336 -6.053 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.118 4.118 6 H 0.094 0.906 7 C -0.153 4.153 8 C -0.167 4.167 9 C -0.209 4.209 10 C -0.001 4.001 11 N -0.389 5.389 12 C 0.353 3.647 13 O -0.426 6.426 14 C -0.132 4.132 15 C -0.234 4.234 16 C -0.119 4.119 17 C -0.228 4.228 18 C 0.096 3.904 19 C -0.491 4.491 20 H 0.098 0.902 21 C -0.147 4.147 22 N -0.414 5.414 23 Si 0.735 3.265 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.108 4.108 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.233 0.767 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.095 0.905 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.776 -8.245 -5.976 19.624 hybrid contribution 0.436 0.405 0.158 0.616 sum -16.340 -7.839 -5.817 19.034 Atomic orbital electron populations 1.21778 0.96086 1.01420 1.01735 1.21545 0.95663 0.97164 1.01979 1.21637 0.95310 0.96525 1.02131 1.21612 0.95369 0.95721 1.02554 1.21432 0.94867 0.96685 0.98846 0.90607 1.21647 1.00290 0.99384 0.93973 1.21663 1.01431 0.99249 0.94401 1.21761 1.00917 1.00432 0.97778 1.21358 0.92827 0.84609 1.01321 1.45941 1.08222 1.09566 1.75132 1.18827 0.81227 0.89601 0.75046 1.90693 1.54956 1.45906 1.51032 1.19502 0.95364 0.90692 1.07688 1.20354 0.96282 0.93046 1.13680 1.20443 0.95371 0.95216 1.00850 1.21138 0.92542 0.98569 1.10575 1.17614 0.93297 0.90830 0.88634 1.19555 0.92316 0.99416 1.37851 0.90173 1.25949 1.01649 0.94252 0.92806 1.69774 1.38090 1.07523 1.26060 0.86265 0.81807 0.78675 0.79721 1.19491 1.20012 1.18459 1.21638 0.92713 0.98312 0.98097 0.92851 0.92965 0.92806 0.92130 0.92085 0.92058 0.91783 0.91319 0.91744 0.91825 0.91721 0.91949 0.91302 0.93140 0.92637 0.92996 0.92138 0.91473 0.76692 0.89286 0.88909 0.88593 0.90533 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.89 4.84 -26.74 -0.13 -1.02 16 4 C -0.11 -0.99 4.52 -26.73 -0.12 -1.11 16 5 C -0.10 -0.99 2.19 -90.62 -0.20 -1.19 16 6 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 7 C -0.12 -1.09 4.66 -26.73 -0.12 -1.22 16 8 C -0.13 -1.30 5.25 -26.73 -0.14 -1.44 16 9 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 10 C 0.12 1.70 4.80 -4.05 -0.02 1.68 16 11 N -0.73 -12.12 5.26 -61.25 -0.32 -12.44 16 12 C 0.56 12.42 7.77 -12.31 -0.10 12.32 16 13 O -0.55 -13.94 16.33 5.32 0.09 -13.86 16 14 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 15 C -0.21 -4.49 9.55 -38.92 -0.37 -4.86 16 16 C -0.10 -2.15 10.01 -39.73 -0.40 -2.54 16 17 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 18 C 0.10 2.63 5.54 -106.87 -0.59 2.04 16 19 C -0.46 -12.24 9.05 -37.73 -0.34 -12.58 16 20 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 21 C 0.07 1.84 5.20 -17.34 -0.09 1.75 16 22 N -0.79 -21.22 10.96 55.55 0.61 -20.61 16 23 Si 0.91 19.02 29.58 -169.99 -5.03 13.99 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 27 C -0.09 -2.35 8.21 -38.44 -0.32 -2.67 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.47 6.82 -51.93 -0.35 0.12 16 35 H 0.07 0.59 6.26 -51.93 -0.33 0.27 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.65 7.25 -51.93 -0.38 0.28 16 38 H 0.06 0.54 6.61 -51.93 -0.34 0.19 16 39 H 0.06 0.56 6.48 -51.93 -0.34 0.23 16 40 H 0.07 0.83 6.15 -51.93 -0.32 0.51 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.98 6.06 -51.93 -0.31 0.66 16 46 H 0.40 5.72 5.68 -40.82 -0.23 5.49 16 47 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 48 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 49 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 50 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 51 H 0.13 3.88 5.86 -52.48 -0.31 3.57 16 LS Contribution 399.99 15.07 6.03 6.03 Total: -1.00 -29.48 399.99 -10.69 -40.17 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -8.71 Total: 9.32 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -3.36 Total: -22.59 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.29 Total: -33.05 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.48 -10.69 -40.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440802145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.108 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds