Wall clock time and date at job start Tue Mar 31 2020 11:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 C 1.52992 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47278 * 185.79028 * 4 3 2 6 6 H 1.09001 * 109.46810 * 54.12765 * 5 4 3 7 7 C 1.53004 * 109.46862 * 294.13423 * 5 4 3 8 8 C 1.53001 * 109.46669 * 297.44761 * 7 5 4 9 9 C 1.53002 * 109.46835 * 182.12537 * 8 7 5 10 10 C 1.52996 * 109.47377 * 174.13079 * 5 4 3 11 11 N 1.46497 * 109.46894 * 184.99978 * 10 5 4 12 12 C 1.34783 * 120.00047 * 180.02562 * 11 10 5 13 13 O 1.21550 * 119.99547 * 359.97438 * 12 11 10 14 14 C 1.47876 * 120.00262 * 179.97438 * 12 11 10 15 15 C 1.39926 * 120.02309 * 359.72252 * 14 12 11 16 16 C 1.38332 * 120.35248 * 179.74075 * 15 14 12 17 17 C 1.37748 * 120.41865 * 0.56097 * 16 15 14 18 18 C 1.40757 * 120.03693 * 359.69583 * 17 16 15 19 19 C 1.41428 * 120.17758 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00379 * 331.86086 * 19 18 17 21 21 C 1.39942 * 120.00137 * 151.86444 * 19 18 17 22 22 N 1.30830 * 119.99663 * 346.25653 * 21 19 18 23 23 Si 1.86796 * 120.00108 * 166.25097 * 21 19 18 24 24 H 1.48500 * 109.47045 * 90.00305 * 23 21 19 25 25 H 1.48504 * 109.47153 * 209.99926 * 23 21 19 26 26 H 1.48497 * 109.47577 * 330.00370 * 23 21 19 27 27 C 1.38996 * 120.02920 * 179.97438 * 14 12 11 28 28 H 1.09004 * 109.47445 * 59.99987 * 1 2 3 29 29 H 1.08999 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47533 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47113 * 240.00032 * 2 1 3 32 32 H 1.09003 * 109.46703 * 120.00038 * 2 1 3 33 33 H 1.09001 * 109.47015 * 59.99972 * 3 2 1 34 34 H 1.08997 * 109.46931 * 299.99948 * 3 2 1 35 35 H 1.08994 * 109.47261 * 65.79049 * 4 3 2 36 36 H 1.08999 * 109.47635 * 305.78632 * 4 3 2 37 37 H 1.08993 * 109.47018 * 177.45124 * 7 5 4 38 38 H 1.08999 * 109.47378 * 57.44674 * 7 5 4 39 39 H 1.09004 * 109.47089 * 62.13381 * 8 7 5 40 40 H 1.08995 * 109.47742 * 302.12945 * 8 7 5 41 41 H 1.08997 * 109.47462 * 300.00171 * 9 8 7 42 42 H 1.08998 * 109.47247 * 60.00321 * 9 8 7 43 43 H 1.08998 * 109.47120 * 180.02562 * 9 8 7 44 44 H 1.08996 * 109.47035 * 305.00067 * 10 5 4 45 45 H 1.08996 * 109.47013 * 64.99922 * 10 5 4 46 46 H 0.96997 * 120.00512 * 0.02562 * 11 10 5 47 47 H 1.07993 * 119.82035 * 359.97438 * 15 14 12 48 48 H 1.08003 * 119.78719 * 180.27713 * 16 15 14 49 49 H 1.07993 * 119.98763 * 179.72080 * 17 16 15 50 50 H 0.97000 * 119.99745 * 180.02562 * 22 21 19 51 51 H 1.08005 * 120.19764 * 359.96230 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0800 2.8776 0.1462 6 1 3.6330 3.3342 1.0292 7 6 3.6945 3.6842 -1.0955 8 6 4.3733 3.0806 -2.3267 9 6 4.0305 3.9184 -3.5602 10 6 5.6028 2.8652 0.2938 11 7 6.0794 4.2261 0.5524 12 6 7.3966 4.4589 0.7174 13 8 8.1890 3.5395 0.6522 14 6 7.8778 5.8328 0.9778 15 6 6.9666 6.8924 1.0472 16 6 7.4087 8.1794 1.2957 17 6 8.7514 8.4348 1.4664 18 6 9.6835 7.3825 1.3947 19 6 11.0628 7.6413 1.5700 20 1 11.4680 8.6083 1.3110 21 6 11.9027 6.6443 2.0789 22 7 11.3890 5.5801 2.6405 23 14 13.7571 6.8328 1.9563 24 1 14.2647 7.5301 3.1651 25 1 14.3857 5.4909 1.8583 26 1 14.0951 7.6273 0.7481 27 6 9.2361 6.0734 1.1487 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 1.0209 -0.9364 36 1 3.9330 0.8416 0.8345 37 1 4.0180 4.7177 -0.9723 38 1 2.6127 3.6552 -1.2262 39 1 4.0210 2.0593 -2.4718 40 1 5.4533 3.0749 -2.1800 41 1 2.9504 3.9240 -3.7069 42 1 4.3827 4.9396 -3.4151 43 1 4.5137 3.4882 -4.4374 44 1 5.8819 2.2183 1.1255 45 1 6.0538 2.4907 -0.6250 46 1 5.4470 4.9598 0.6048 47 1 5.9122 6.7038 0.9097 48 1 6.6969 8.9897 1.3518 49 1 9.0893 9.4429 1.6556 50 1 11.9712 4.8892 2.9936 51 1 9.9433 5.2590 1.0925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440802145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:22 Heat of formation + Delta-G solvation = -81.532642 kcal Electronic energy + Delta-G solvation = -26281.421397 eV Core-core repulsion = 22756.799250 eV Total energy + Delta-G solvation = -3524.622146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.01970 -39.32168 -38.57161 -35.97565 -35.58017 -34.83761 -32.83520 -31.87230 -31.28079 -29.23164 -27.50265 -26.97873 -25.08623 -23.70979 -23.37685 -22.77836 -21.82989 -21.17801 -20.11007 -19.37785 -17.91682 -17.15702 -16.88515 -16.72486 -16.55156 -16.37765 -15.68106 -15.41174 -15.27582 -15.04501 -14.76232 -14.52313 -14.31287 -14.24662 -13.96370 -13.77103 -13.49325 -13.28229 -13.13391 -12.93417 -12.78831 -12.63355 -12.53975 -12.45857 -12.21151 -12.18764 -11.96962 -11.91332 -11.58922 -11.52639 -11.49297 -11.33971 -11.20852 -11.09395 -11.05003 -10.73991 -10.09042 -9.44794 -9.36704 -8.63689 -6.39835 0.37822 1.00547 1.35773 1.45743 1.51573 2.10708 2.19882 2.28968 2.80516 3.67405 3.68613 3.86661 3.87736 4.06001 4.13613 4.18498 4.27181 4.36717 4.41312 4.48916 4.53067 4.58354 4.59991 4.67195 4.83180 4.84250 4.88210 4.91690 4.92971 4.99565 5.04354 5.07893 5.09260 5.14785 5.18401 5.22176 5.29683 5.31240 5.32245 5.40477 5.45221 5.49884 5.50519 5.53029 5.55589 5.62542 5.86268 5.91548 6.04988 6.28632 6.52083 6.69840 6.88505 6.94387 7.33120 8.33311 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002485 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.881047 B =11265.474123 C =11682.814705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.087 4.087 6 H 0.086 0.914 7 C -0.112 4.112 8 C -0.130 4.130 9 C -0.151 4.151 10 C 0.120 3.880 11 N -0.708 5.708 12 C 0.558 3.442 13 O -0.593 6.593 14 C -0.141 4.141 15 C -0.192 4.192 16 C -0.098 4.098 17 C -0.212 4.212 18 C 0.066 3.934 19 C -0.499 4.499 20 H 0.084 0.916 21 C 0.026 3.974 22 N -0.833 5.833 23 Si 0.984 3.016 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.255 1.255 27 C -0.126 4.126 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.411 0.589 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.110 0.890 50 H 0.285 0.715 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.448 -6.345 -6.555 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.150 4.150 4 C -0.150 4.150 5 C -0.106 4.106 6 H 0.105 0.895 7 C -0.150 4.150 8 C -0.167 4.167 9 C -0.208 4.208 10 C -0.003 4.003 11 N -0.361 5.361 12 C 0.348 3.652 13 O -0.475 6.475 14 C -0.144 4.144 15 C -0.211 4.211 16 C -0.116 4.116 17 C -0.232 4.232 18 C 0.064 3.936 19 C -0.529 4.529 20 H 0.102 0.898 21 C -0.188 4.188 22 N -0.459 5.459 23 Si 0.804 3.196 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.178 1.178 27 C -0.147 4.147 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.250 0.750 47 H 0.154 0.846 48 H 0.158 0.842 49 H 0.128 0.872 50 H 0.095 0.905 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.871 -7.230 -6.484 22.117 hybrid contribution 1.145 0.099 0.268 1.180 sum -18.726 -7.131 -6.216 20.980 Atomic orbital electron populations 1.21771 0.95490 1.01749 1.01952 1.21545 0.96183 0.96890 1.01839 1.21587 0.93949 0.96887 1.02568 1.21587 0.96435 0.94534 1.02407 1.21376 0.91452 0.98004 0.99753 0.89546 1.21650 1.01516 0.98715 0.93073 1.21645 0.99777 1.00185 0.95123 1.21753 1.01961 0.99680 0.97402 1.21561 0.95730 0.82634 1.00384 1.45736 1.06343 1.11319 1.72712 1.18755 0.82725 0.88611 0.75154 1.90668 1.56589 1.46892 1.53313 1.19807 0.94868 0.92583 1.07122 1.20867 0.98038 0.92053 1.10191 1.20945 0.95068 0.96658 0.98882 1.21455 0.93585 0.98454 1.09714 1.17965 0.94361 0.91603 0.89708 1.19839 0.93218 1.00195 1.39604 0.89818 1.26864 1.06505 0.93572 0.91850 1.69887 1.39732 1.08614 1.27672 0.85174 0.75578 0.78647 0.80152 1.18176 1.19847 1.17815 1.21431 0.93829 0.97783 1.01642 0.92475 0.92665 0.92723 0.92126 0.92471 0.91806 0.91067 0.91335 0.92231 0.92292 0.89526 0.90913 0.94011 0.91494 0.93507 0.93097 0.93354 0.92300 0.75049 0.84562 0.84185 0.87228 0.90475 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.13 -1.52 5.93 30.59 0.18 -1.34 16 3 C -0.11 -1.36 4.84 30.59 0.15 -1.22 16 4 C -0.11 -1.70 4.52 30.59 0.14 -1.56 16 5 C -0.09 -1.54 2.19 -10.79 -0.02 -1.56 16 6 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 7 C -0.11 -1.79 4.66 30.60 0.14 -1.65 16 8 C -0.13 -2.36 5.25 30.60 0.16 -2.20 16 9 C -0.15 -2.53 9.91 71.98 0.71 -1.82 16 10 C 0.12 3.25 4.80 86.38 0.41 3.66 16 11 N -0.71 -22.57 5.26 -465.95 -2.45 -25.02 16 12 C 0.56 25.04 7.77 86.79 0.67 25.71 16 13 O -0.59 -31.74 16.33 -3.87 -0.06 -31.81 16 14 C -0.14 -6.74 5.87 -20.13 -0.12 -6.86 16 15 C -0.19 -7.52 9.55 22.70 0.22 -7.31 16 16 C -0.10 -3.85 10.01 22.18 0.22 -3.63 16 17 C -0.21 -9.96 9.78 22.77 0.22 -9.74 16 18 C 0.07 3.63 5.54 -21.32 -0.12 3.51 16 19 C -0.50 -27.58 9.05 23.47 0.21 -27.37 16 20 H 0.08 4.35 7.88 -2.91 -0.02 4.33 16 21 C 0.03 1.38 5.20 85.25 0.44 1.82 16 22 N -0.83 -47.57 10.96 21.83 0.24 -47.33 16 23 Si 0.98 40.46 29.58 68.60 2.03 42.49 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 27 C -0.13 -7.14 8.21 23.01 0.19 -6.96 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.78 6.82 -2.39 -0.02 0.77 16 35 H 0.07 1.06 6.26 -2.39 -0.01 1.04 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.01 7.25 -2.39 -0.02 1.00 16 38 H 0.09 1.07 6.61 -2.39 -0.02 1.06 16 39 H 0.07 1.16 6.48 -2.38 -0.02 1.15 16 40 H 0.04 0.99 6.15 -2.39 -0.01 0.97 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.74 6.06 -2.39 -0.01 1.72 16 46 H 0.41 10.60 5.68 -92.71 -0.53 10.08 16 47 H 0.14 4.01 6.38 -2.91 -0.02 3.99 16 48 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 49 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 50 H 0.28 15.03 8.30 -92.71 -0.77 14.26 16 51 H 0.10 6.06 5.86 -2.91 -0.02 6.05 16 Total: -1.00 -69.23 399.99 4.67 -64.56 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.38 Total: 36.50 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 4.53 Total: -39.39 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -2.21 Total: -72.35 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.06 Total: -31.81 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -69.23 4.67 -64.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440802145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.972 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds