Wall clock time and date at job start Tue Mar 31 2020 11:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99801 * 2 1 4 4 O 1.42894 * 109.47324 * 135.00115 * 3 2 1 5 5 C 1.35896 * 117.00337 * 179.97438 * 4 3 2 6 6 C 1.38755 * 120.05248 * 359.72831 * 5 4 3 7 7 C 1.38130 * 119.94249 * 179.69783 * 6 5 4 8 8 C 1.38289 * 120.05358 * 0.60033 * 7 6 5 9 9 C 1.38243 * 120.11356 * 359.67399 * 8 7 6 10 10 C 1.50701 * 119.97445 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.46906 * 257.73608 * 10 9 8 12 12 C 1.46897 * 110.99891 * 154.16354 * 11 10 9 13 13 C 1.50699 * 109.47410 * 207.32069 * 12 11 10 14 14 H 1.07999 * 120.00111 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00157 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00172 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00040 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47114 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47458 * 119.99893 * 17 15 13 20 20 H 1.48504 * 109.47169 * 240.00331 * 17 15 13 21 21 C 1.46901 * 111.00008 * 278.11814 * 11 10 9 22 22 C 1.52991 * 109.47057 * 311.28431 * 21 11 10 23 23 C 1.53007 * 109.46792 * 89.79596 * 22 21 11 24 24 C 1.52998 * 109.47431 * 209.79263 * 22 21 11 25 25 C 1.53002 * 109.47612 * 329.79648 * 22 21 11 26 26 C 1.38172 * 120.05482 * 0.02662 * 9 8 7 27 27 H 1.07997 * 119.99635 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00136 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00136 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46506 * 255.00394 * 3 2 1 31 31 H 1.08996 * 109.47063 * 14.99588 * 3 2 1 32 32 H 1.07993 * 120.02990 * 359.97141 * 6 5 4 33 33 H 1.08002 * 119.97125 * 180.29573 * 7 6 5 34 34 H 1.08001 * 119.94401 * 179.70327 * 8 7 6 35 35 H 1.08995 * 109.46743 * 17.73426 * 10 9 8 36 36 H 1.08992 * 109.47171 * 137.73449 * 10 9 8 37 37 H 1.08997 * 109.47412 * 327.32214 * 12 11 10 38 38 H 1.09003 * 109.46938 * 87.32243 * 12 11 10 39 39 H 0.97001 * 120.00522 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.47139 * 71.29112 * 21 11 10 41 41 H 1.09000 * 109.47076 * 191.28376 * 21 11 10 42 42 H 1.08994 * 109.47028 * 53.06768 * 23 22 21 43 43 H 1.09000 * 109.46726 * 173.06690 * 23 22 21 44 44 H 1.08999 * 109.46985 * 293.06389 * 23 22 21 45 45 H 1.09003 * 109.46906 * 59.99900 * 24 22 21 46 46 H 1.08995 * 109.47654 * 180.02562 * 24 22 21 47 47 H 1.09002 * 109.46933 * 300.00835 * 24 22 21 48 48 H 1.09003 * 109.46754 * 37.25788 * 25 22 21 49 49 H 1.08991 * 109.47545 * 157.26062 * 25 22 21 50 50 H 1.09000 * 109.46450 * 277.26478 * 25 22 21 51 51 H 1.08002 * 120.03013 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9097 2.3450 1.0781 6 6 3.6632 3.4645 0.2962 7 6 4.4566 4.5873 0.4301 8 6 5.5035 4.5918 1.3337 9 6 5.7546 3.4757 2.1098 10 6 6.8960 3.4842 3.0939 11 7 8.0286 2.7329 2.5366 12 6 9.2999 3.1956 3.1090 13 6 10.4136 2.9488 2.1242 14 1 10.1985 2.4942 1.1685 15 6 11.7070 3.3045 2.4429 16 7 11.9689 3.8585 3.6064 17 14 13.0874 2.9993 1.2218 18 1 12.5338 2.3699 -0.0041 19 1 13.7297 4.2905 0.8678 20 1 14.0960 2.0952 1.8307 21 6 7.8538 1.2887 2.7408 22 6 7.4794 1.0217 4.2000 23 6 5.9572 1.0592 4.3509 24 6 7.9992 -0.3558 4.6162 25 6 8.1069 2.0945 5.0923 26 6 4.9601 2.3523 1.9840 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 2.4754 1.4868 -0.9927 31 1 1.3855 2.1161 0.2659 32 1 2.8491 3.4596 -0.4133 33 1 4.2622 5.4606 -0.1748 34 1 6.1256 5.4689 1.4335 35 1 7.2017 4.5125 3.2867 36 1 6.5753 3.0197 4.0262 37 1 9.2347 4.2621 3.3241 38 1 9.5028 2.6507 4.0310 39 1 12.8789 4.1084 3.8308 40 1 7.0604 0.9230 2.0892 41 1 8.7846 0.7731 2.5044 42 1 5.5036 0.3822 3.6271 43 1 5.6844 0.7487 5.3595 44 1 5.5994 2.0734 4.1736 45 1 9.0836 -0.3825 4.5086 46 1 7.7321 -0.5462 5.6555 47 1 7.5522 -1.1201 3.9805 48 1 8.0784 3.0559 4.5793 49 1 7.5478 2.1638 6.0253 50 1 9.1417 1.8282 5.3076 51 1 5.1564 1.4807 2.5909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000513750656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:24 Heat of formation + Delta-G solvation = 71.142071 kcal Electronic energy + Delta-G solvation = -27716.455461 eV Core-core repulsion = 24198.453788 eV Total energy + Delta-G solvation = -3518.001674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.46681 -39.45033 -37.29765 -34.35107 -33.92242 -32.55984 -31.30673 -29.88532 -27.79151 -27.58445 -26.66866 -26.61033 -25.78365 -23.62359 -22.23748 -21.24094 -20.34249 -20.01486 -18.54616 -17.57588 -16.47616 -16.36019 -15.91246 -15.85450 -15.22729 -14.96293 -14.58274 -14.48304 -14.05800 -13.76609 -13.55096 -13.39964 -13.19656 -12.96555 -12.63507 -12.41286 -12.15638 -11.94639 -11.52091 -11.39991 -11.28719 -11.26945 -11.07056 -11.03632 -10.92592 -10.84336 -10.66355 -10.60108 -10.34258 -10.31201 -9.89455 -9.81283 -9.68252 -9.62287 -9.05968 -8.54286 -8.30775 -7.95343 -6.99207 -5.94568 -3.94086 1.59678 1.71751 1.76297 3.32878 3.34399 3.42153 3.47916 4.01239 4.49441 4.55167 4.72989 4.95004 5.02459 5.07317 5.12362 5.15825 5.23320 5.25465 5.36442 5.39661 5.44690 5.48031 5.61255 5.68655 5.78045 5.86543 5.89381 5.97777 5.99347 6.04740 6.16221 6.18076 6.22160 6.26687 6.31326 6.36622 6.42954 6.45656 6.55736 6.64436 6.67746 6.74996 6.85540 6.91224 6.99708 7.04560 7.27910 7.49538 7.56602 7.91670 8.18907 8.28687 8.63493 9.13555 9.68574 11.14588 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.003422 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.676797 B = 8180.935437 C = 8879.938719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.151 4.151 3 C 0.087 3.913 4 O -0.314 6.314 5 C 0.121 3.879 6 C -0.221 4.221 7 C -0.085 4.085 8 C -0.142 4.142 9 C -0.015 4.015 10 C 0.051 3.949 11 N -0.523 5.523 12 C 0.160 3.840 13 C -0.496 4.496 14 H 0.061 0.939 15 C 0.053 3.947 16 N -0.902 5.902 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.068 3.932 22 C -0.102 4.102 23 C -0.163 4.163 24 C -0.135 4.135 25 C -0.169 4.169 26 C -0.169 4.169 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.023 0.977 38 H 0.039 0.961 39 H 0.258 0.742 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.091 0.909 49 H 0.036 0.964 50 H 0.067 0.933 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.225 -4.571 -2.485 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C 0.012 3.988 4 O -0.228 6.228 5 C 0.076 3.924 6 C -0.240 4.240 7 C -0.103 4.103 8 C -0.161 4.161 9 C -0.016 4.016 10 C -0.076 4.076 11 N -0.245 5.245 12 C 0.036 3.964 13 C -0.535 4.535 14 H 0.079 0.921 15 C -0.147 4.147 16 N -0.542 5.542 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.061 4.061 22 C -0.103 4.103 23 C -0.219 4.219 24 C -0.192 4.192 25 C -0.225 4.225 26 C -0.187 4.187 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.055 0.945 50 H 0.086 0.914 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.024 -4.576 -2.802 20.730 hybrid contribution 0.747 -0.083 -0.134 0.763 sum -19.277 -4.659 -2.936 20.048 Atomic orbital electron populations 1.23854 0.95429 1.02428 0.99680 1.22725 0.95651 0.98017 1.00552 1.21750 0.88093 0.96421 0.92498 1.86058 1.42085 1.36253 1.58436 1.18977 0.91782 0.85717 0.95880 1.21086 1.04115 0.94840 1.03980 1.20846 0.94726 0.97135 0.97570 1.21024 0.98373 0.99158 0.97555 1.19865 0.93996 0.92077 0.95682 1.21953 0.90563 0.99945 0.95122 1.62209 1.02118 1.01971 1.58198 1.20629 0.84060 0.95677 0.96012 1.21290 0.91162 1.38825 1.02220 0.92113 1.24944 0.98665 0.95734 0.95393 1.69949 1.19990 1.42993 1.21317 0.86524 0.82119 0.77745 0.81524 1.19754 1.21218 1.21266 1.22313 1.01453 0.90402 0.91902 1.21197 0.94728 0.95955 0.98465 1.22786 0.95793 1.02446 1.00894 1.21850 1.01328 0.95940 1.00113 1.22943 1.00496 1.00698 0.98359 1.21215 0.95207 1.01047 1.01209 0.87547 0.88329 0.86240 0.91194 0.91749 0.86387 0.86341 0.86005 0.90790 0.90198 0.95936 0.94385 0.93192 0.92210 0.90270 0.92282 0.93299 0.90302 0.92257 0.93494 0.93207 0.89044 0.94496 0.91448 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 14.31 29.01 0.42 -0.80 16 2 C -0.15 -1.30 9.89 -36.03 -0.36 -1.66 16 3 C 0.09 0.87 5.15 36.01 0.19 1.06 16 4 O -0.31 -4.27 10.12 -19.41 -0.20 -4.47 16 5 C 0.12 1.78 6.69 -39.22 -0.26 1.51 16 6 C -0.22 -2.93 9.04 -39.43 -0.36 -3.29 16 7 C -0.08 -1.15 10.04 -39.60 -0.40 -1.54 16 8 C -0.14 -2.20 9.66 -39.56 -0.38 -2.59 16 9 C -0.02 -0.25 5.30 -104.64 -0.55 -0.81 16 10 C 0.05 0.90 3.71 -4.98 -0.02 0.89 16 11 N -0.52 -10.87 4.46 -237.54 -1.06 -11.93 16 12 C 0.16 3.95 3.40 -4.98 -0.02 3.93 16 13 C -0.50 -13.80 8.94 -34.44 -0.31 -14.10 16 14 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 16 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 17 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.07 1.28 4.84 -3.83 -0.02 1.26 16 22 C -0.10 -1.63 0.77 -154.51 -0.12 -1.75 16 23 C -0.16 -2.27 6.39 37.16 0.24 -2.03 16 24 C -0.13 -1.99 8.19 37.16 0.30 -1.69 16 25 C -0.17 -2.98 6.20 37.16 0.23 -2.75 16 26 C -0.17 -2.65 7.61 -39.43 -0.30 -2.95 16 27 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 28 H 0.10 0.58 7.90 -52.49 -0.41 0.17 16 29 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.07 0.65 7.65 -51.93 -0.40 0.25 16 31 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16 32 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.81 8.02 -52.49 -0.42 1.39 16 35 H 0.07 1.34 7.22 -51.93 -0.38 0.97 16 36 H 0.08 1.31 2.35 -51.93 -0.12 1.19 16 37 H 0.02 0.60 7.37 -51.93 -0.38 0.22 16 38 H 0.04 0.96 3.84 -51.93 -0.20 0.76 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.06 1.07 6.10 -51.93 -0.32 0.75 16 41 H 0.08 1.65 7.36 -51.93 -0.38 1.26 16 42 H 0.06 0.79 6.41 -51.93 -0.33 0.46 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.12 3.59 -51.93 -0.19 0.94 16 45 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.75 2.69 -51.93 -0.14 1.61 16 49 H 0.04 0.57 7.94 -51.93 -0.41 0.16 16 50 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 51 H 0.15 2.29 2.66 -52.49 -0.14 2.15 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -29.95 378.71 -9.44 -39.39 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.79 Total: 6.04 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -1.82 Total: -25.91 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.32 Total: -37.56 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.95 -9.44 -39.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513750656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.531 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds