Wall clock time and date at job start Tue Mar 31 2020 11:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99801 * 2 1 4 4 O 1.42894 * 109.47324 * 135.00115 * 3 2 1 5 5 C 1.35896 * 117.00337 * 179.97438 * 4 3 2 6 6 C 1.38755 * 120.05248 * 359.72831 * 5 4 3 7 7 C 1.38130 * 119.94249 * 179.69783 * 6 5 4 8 8 C 1.38289 * 120.05358 * 0.60033 * 7 6 5 9 9 C 1.38243 * 120.11356 * 359.67399 * 8 7 6 10 10 C 1.50701 * 119.97445 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.46906 * 257.73608 * 10 9 8 12 12 C 1.46897 * 110.99891 * 154.16354 * 11 10 9 13 13 C 1.50699 * 109.47410 * 207.32069 * 12 11 10 14 14 H 1.07999 * 120.00111 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00157 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00172 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00040 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47114 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47458 * 119.99893 * 17 15 13 20 20 H 1.48504 * 109.47169 * 240.00331 * 17 15 13 21 21 C 1.46901 * 111.00008 * 278.11814 * 11 10 9 22 22 C 1.52991 * 109.47057 * 311.28431 * 21 11 10 23 23 C 1.53007 * 109.46792 * 89.79596 * 22 21 11 24 24 C 1.52998 * 109.47431 * 209.79263 * 22 21 11 25 25 C 1.53002 * 109.47612 * 329.79648 * 22 21 11 26 26 C 1.38172 * 120.05482 * 0.02662 * 9 8 7 27 27 H 1.07997 * 119.99635 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00136 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00136 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46506 * 255.00394 * 3 2 1 31 31 H 1.08996 * 109.47063 * 14.99588 * 3 2 1 32 32 H 1.07993 * 120.02990 * 359.97141 * 6 5 4 33 33 H 1.08002 * 119.97125 * 180.29573 * 7 6 5 34 34 H 1.08001 * 119.94401 * 179.70327 * 8 7 6 35 35 H 1.08995 * 109.46743 * 17.73426 * 10 9 8 36 36 H 1.08992 * 109.47171 * 137.73449 * 10 9 8 37 37 H 1.08997 * 109.47412 * 327.32214 * 12 11 10 38 38 H 1.09003 * 109.46938 * 87.32243 * 12 11 10 39 39 H 0.97001 * 120.00522 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.47139 * 71.29112 * 21 11 10 41 41 H 1.09000 * 109.47076 * 191.28376 * 21 11 10 42 42 H 1.08994 * 109.47028 * 53.06768 * 23 22 21 43 43 H 1.09000 * 109.46726 * 173.06690 * 23 22 21 44 44 H 1.08999 * 109.46985 * 293.06389 * 23 22 21 45 45 H 1.09003 * 109.46906 * 59.99900 * 24 22 21 46 46 H 1.08995 * 109.47654 * 180.02562 * 24 22 21 47 47 H 1.09002 * 109.46933 * 300.00835 * 24 22 21 48 48 H 1.09003 * 109.46754 * 37.25788 * 25 22 21 49 49 H 1.08991 * 109.47545 * 157.26062 * 25 22 21 50 50 H 1.09000 * 109.46450 * 277.26478 * 25 22 21 51 51 H 1.08002 * 120.03013 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9097 2.3450 1.0781 6 6 3.6632 3.4645 0.2962 7 6 4.4566 4.5873 0.4301 8 6 5.5035 4.5918 1.3337 9 6 5.7546 3.4757 2.1098 10 6 6.8960 3.4842 3.0939 11 7 8.0286 2.7329 2.5366 12 6 9.2999 3.1956 3.1090 13 6 10.4136 2.9488 2.1242 14 1 10.1985 2.4942 1.1685 15 6 11.7070 3.3045 2.4429 16 7 11.9689 3.8585 3.6064 17 14 13.0874 2.9993 1.2218 18 1 12.5338 2.3699 -0.0041 19 1 13.7297 4.2905 0.8678 20 1 14.0960 2.0952 1.8307 21 6 7.8538 1.2887 2.7408 22 6 7.4794 1.0217 4.2000 23 6 5.9572 1.0592 4.3509 24 6 7.9992 -0.3558 4.6162 25 6 8.1069 2.0945 5.0923 26 6 4.9601 2.3523 1.9840 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 2.4754 1.4868 -0.9927 31 1 1.3855 2.1161 0.2659 32 1 2.8491 3.4596 -0.4133 33 1 4.2622 5.4606 -0.1748 34 1 6.1256 5.4689 1.4335 35 1 7.2017 4.5125 3.2867 36 1 6.5753 3.0197 4.0262 37 1 9.2347 4.2621 3.3241 38 1 9.5028 2.6507 4.0310 39 1 12.8789 4.1084 3.8308 40 1 7.0604 0.9230 2.0892 41 1 8.7846 0.7731 2.5044 42 1 5.5036 0.3822 3.6271 43 1 5.6844 0.7487 5.3595 44 1 5.5994 2.0734 4.1736 45 1 9.0836 -0.3825 4.5086 46 1 7.7321 -0.5462 5.6555 47 1 7.5522 -1.1201 3.9805 48 1 8.0784 3.0559 4.5793 49 1 7.5478 2.1638 6.0253 50 1 9.1417 1.8282 5.3076 51 1 5.1564 1.4807 2.5909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513750656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:23 Heat of formation + Delta-G solvation = 55.101586 kcal Electronic energy + Delta-G solvation = -27717.151029 eV Core-core repulsion = 24198.453788 eV Total energy + Delta-G solvation = -3518.697241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76601 -40.62965 -38.37629 -35.62366 -34.98082 -34.37352 -32.69958 -30.99556 -29.42927 -28.92280 -28.21251 -27.52206 -27.04330 -25.33905 -23.37883 -22.66882 -21.65251 -20.79924 -19.87639 -18.79799 -18.28968 -17.36373 -17.10415 -16.87841 -16.76589 -16.39900 -16.15949 -15.57885 -15.46327 -15.20569 -14.80406 -14.46588 -14.26432 -14.23852 -14.04609 -13.57093 -13.42927 -13.14805 -12.97544 -12.86441 -12.74088 -12.62381 -12.46372 -12.37161 -12.25362 -12.18783 -12.09416 -11.99459 -11.86999 -11.62537 -11.52721 -11.41251 -11.09755 -10.90847 -10.46646 -10.41363 -9.69464 -9.05808 -8.66962 -8.09621 -6.18975 0.45614 0.58975 1.16143 1.38985 1.40374 1.53230 2.42803 2.45235 2.85029 3.18483 3.57813 3.84212 3.90995 3.91731 3.95854 4.04260 4.09314 4.10467 4.16295 4.33727 4.36290 4.49543 4.52017 4.56499 4.58342 4.64169 4.69805 4.73777 4.80130 4.83934 4.93871 4.98233 4.99938 5.09097 5.16478 5.20027 5.24182 5.31440 5.32452 5.42464 5.48170 5.50755 5.55949 5.58739 5.63295 5.67796 5.76178 5.84400 5.91705 6.21159 6.53077 6.55161 6.73644 6.96285 7.48141 8.96494 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.003422 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.676797 B = 8180.935437 C = 8879.938719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.177 4.177 3 C 0.081 3.919 4 O -0.328 6.328 5 C 0.116 3.884 6 C -0.216 4.216 7 C -0.081 4.081 8 C -0.162 4.162 9 C -0.032 4.032 10 C 0.057 3.943 11 N -0.535 5.535 12 C 0.177 3.823 13 C -0.513 4.513 14 H 0.048 0.952 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.279 1.279 21 C 0.072 3.928 22 C -0.096 4.096 23 C -0.155 4.155 24 C -0.131 4.131 25 C -0.164 4.164 26 C -0.180 4.180 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.095 0.905 37 H -0.007 1.007 38 H 0.033 0.967 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.037 0.963 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.038 0.962 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.724 -5.472 -3.440 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.007 3.993 4 O -0.242 6.242 5 C 0.071 3.929 6 C -0.235 4.235 7 C -0.099 4.099 8 C -0.181 4.181 9 C -0.033 4.033 10 C -0.069 4.069 11 N -0.258 5.258 12 C 0.052 3.948 13 C -0.552 4.552 14 H 0.066 0.934 15 C -0.194 4.194 16 N -0.573 5.573 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.204 1.204 21 C -0.056 4.056 22 C -0.098 4.098 23 C -0.211 4.211 24 C -0.189 4.189 25 C -0.221 4.221 26 C -0.199 4.199 27 H 0.140 0.860 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.011 0.989 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.057 0.943 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.546 -5.487 -3.764 23.507 hybrid contribution 1.379 0.185 0.126 1.397 sum -21.167 -5.302 -3.638 22.122 Atomic orbital electron populations 1.24104 0.94828 1.03762 0.96768 1.22700 0.96282 0.97334 1.03231 1.22013 0.87499 0.97766 0.92040 1.86046 1.42798 1.35874 1.59494 1.19076 0.91625 0.86525 0.95634 1.21430 1.04417 0.93944 1.03706 1.21153 0.93606 0.98298 0.96825 1.21160 0.99527 0.98941 0.98479 1.19724 0.94064 0.93208 0.96293 1.21895 0.89948 0.98675 0.96388 1.62082 1.01655 1.03424 1.58603 1.20296 0.85526 0.93741 0.95233 1.21587 0.92609 1.38715 1.02261 0.93356 1.25727 1.01028 0.95474 0.97127 1.70057 1.20628 1.43771 1.22872 0.85517 0.79098 0.77804 0.79285 1.19470 1.20616 1.20434 1.22255 1.00346 0.88858 0.94186 1.21120 0.96502 0.96166 0.96028 1.22674 0.93441 1.02536 1.02438 1.21809 1.00032 0.95386 1.01639 1.22817 0.99325 1.00278 0.99674 1.21231 0.95852 1.00761 1.02023 0.86040 0.87145 0.86684 0.90608 0.90341 0.83413 0.83514 0.86426 0.92316 0.88780 0.98894 0.94964 0.92976 0.91148 0.93105 0.91332 0.91265 0.90743 0.94346 0.91615 0.91590 0.90925 0.92078 0.94297 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 14.31 67.78 0.97 -0.72 16 2 C -0.18 -2.67 9.89 25.64 0.25 -2.42 16 3 C 0.08 1.42 5.15 71.24 0.37 1.79 16 4 O -0.33 -8.30 10.12 -92.38 -0.93 -9.24 16 5 C 0.12 3.22 6.69 22.51 0.15 3.37 16 6 C -0.22 -5.19 9.04 22.37 0.20 -4.99 16 7 C -0.08 -2.04 10.04 22.26 0.22 -1.82 16 8 C -0.16 -5.01 9.66 22.28 0.22 -4.79 16 9 C -0.03 -1.06 5.30 -19.88 -0.11 -1.17 16 10 C 0.06 2.11 3.71 85.56 0.32 2.42 16 11 N -0.54 -23.25 4.46 -905.43 -4.04 -27.29 16 12 C 0.18 9.24 3.40 85.56 0.29 9.53 16 13 C -0.51 -29.71 8.94 25.60 0.23 -29.48 16 14 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 17 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 C 0.07 2.77 4.84 86.30 0.42 3.19 16 22 C -0.10 -3.08 0.77 -52.18 -0.04 -3.12 16 23 C -0.15 -4.04 6.39 71.98 0.46 -3.58 16 24 C -0.13 -3.77 8.19 71.98 0.59 -3.18 16 25 C -0.16 -5.94 6.20 71.98 0.45 -5.49 16 26 C -0.18 -5.53 7.61 22.37 0.17 -5.36 16 27 H 0.12 0.93 8.06 -2.91 -0.02 0.91 16 28 H 0.11 0.92 7.90 -2.91 -0.02 0.90 16 29 H 0.12 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.08 1.21 7.65 -2.39 -0.02 1.19 16 31 H 0.08 1.13 7.40 -2.39 -0.02 1.11 16 32 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 33 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.12 3.61 8.02 -2.91 -0.02 3.58 16 35 H 0.06 2.28 7.22 -2.39 -0.02 2.26 16 36 H 0.10 3.15 2.35 -2.39 -0.01 3.14 16 37 H -0.01 -0.40 7.37 -2.39 -0.02 -0.42 16 38 H 0.03 1.74 3.84 -2.39 -0.01 1.73 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.07 2.54 6.10 -2.39 -0.01 2.52 16 41 H 0.05 2.21 7.36 -2.39 -0.02 2.19 16 42 H 0.07 1.69 6.41 -2.39 -0.02 1.68 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 2.04 3.59 -2.39 -0.01 2.03 16 45 H 0.04 1.25 8.09 -2.39 -0.02 1.23 16 46 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 48 H 0.07 2.91 2.69 -2.39 -0.01 2.91 16 49 H 0.06 1.87 7.94 -2.39 -0.02 1.85 16 50 H 0.04 1.61 6.75 -2.39 -0.02 1.59 16 51 H 0.15 4.47 2.66 -2.91 -0.01 4.46 16 Total: -1.00 -66.43 378.71 3.88 -62.55 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.92 Total: 27.25 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 5.62 Total: -45.14 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.76 Total: -83.09 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.93 Total: -9.24 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -66.43 3.88 -62.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513750656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.654 kcal (2) G-P(sol) polarization free energy of solvation -66.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds