Wall clock time and date at job start Tue Mar 31 2020 12:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46980 * 2 1 4 4 C 1.52997 * 109.47310 * 120.00258 * 2 1 3 5 5 O 1.42899 * 109.47209 * 64.99971 * 4 2 1 6 6 C 1.35900 * 117.00134 * 179.97438 * 5 4 2 7 7 C 1.38731 * 120.05403 * 179.97438 * 6 5 4 8 8 C 1.38141 * 119.94126 * 179.97438 * 7 6 5 9 9 C 1.38265 * 120.05721 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.94467 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46893 * 90.00178 * 10 9 8 12 12 C 1.46844 * 111.00010 * 66.04645 * 11 10 9 13 13 C 1.53031 * 109.52691 * 174.16099 * 12 11 10 14 14 C 1.53125 * 109.27935 * 59.17796 * 13 12 11 15 15 C 1.53120 * 109.15963 * 302.34974 * 14 13 12 16 16 H 1.09003 * 109.50441 * 297.71516 * 15 14 13 17 17 C 1.50691 * 109.50493 * 177.63394 * 15 14 13 18 18 H 1.08002 * 119.99998 * 275.27111 * 17 15 14 19 19 C 1.37878 * 120.00162 * 95.27229 * 17 15 14 20 20 N 1.31516 * 120.00217 * 185.61030 * 19 17 15 21 21 Si 1.86798 * 119.99883 * 5.60610 * 19 17 15 22 22 H 1.48508 * 109.46925 * 84.78555 * 21 19 17 23 23 H 1.48503 * 109.46938 * 204.78103 * 21 19 17 24 24 H 1.48497 * 109.47359 * 324.78434 * 21 19 17 25 25 C 1.46843 * 110.99949 * 301.83991 * 11 10 9 26 26 C 1.38271 * 120.11194 * 0.27306 * 9 8 7 27 27 C 1.38146 * 120.04947 * 359.45124 * 26 9 8 28 28 H 1.08997 * 109.46969 * 300.00070 * 1 2 3 29 29 H 1.09003 * 109.47050 * 59.99619 * 1 2 3 30 30 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46926 * 240.00433 * 2 1 3 32 32 H 1.09000 * 109.46647 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47069 * 299.99814 * 3 2 1 34 34 H 1.09001 * 109.46938 * 60.00440 * 3 2 1 35 35 H 1.09001 * 109.46919 * 304.99915 * 4 2 1 36 36 H 1.08998 * 109.47168 * 184.99890 * 4 2 1 37 37 H 1.07996 * 120.02958 * 359.96450 * 7 6 5 38 38 H 1.08007 * 119.97366 * 179.97438 * 8 7 6 39 39 H 1.08992 * 109.47139 * 330.00267 * 10 9 8 40 40 H 1.08998 * 109.47065 * 209.99723 * 10 9 8 41 41 H 1.09002 * 109.46575 * 54.13872 * 12 11 10 42 42 H 1.09005 * 109.45479 * 294.17064 * 12 11 10 43 43 H 1.09000 * 109.49958 * 299.23963 * 13 12 11 44 44 H 1.08996 * 109.54051 * 179.14030 * 13 12 11 45 45 H 1.08998 * 109.52464 * 182.44741 * 14 13 12 46 46 H 1.08993 * 109.57265 * 62.27969 * 14 13 12 47 47 H 0.96999 * 120.00445 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.46506 * 65.82190 * 25 11 10 49 49 H 1.09005 * 109.45780 * 305.85166 * 25 11 10 50 50 H 1.07997 * 119.96657 * 179.70326 * 26 9 8 51 51 H 1.07997 * 120.02170 * 180.27416 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0982 1.1919 6 6 2.0406 -2.8858 2.2327 7 6 1.7068 -4.2323 2.2424 8 6 2.0933 -5.0308 3.3013 9 6 2.8119 -4.4891 4.3510 10 6 3.2318 -5.3624 5.5052 11 7 4.5511 -5.9442 5.2243 12 6 5.5863 -4.9037 5.1789 13 6 6.9621 -5.5570 5.0302 14 6 6.9908 -6.3880 3.7444 15 6 5.8724 -7.4326 3.7961 16 1 6.0451 -8.1095 4.6329 17 6 5.8565 -8.2169 2.5095 18 1 5.3242 -7.8350 1.6509 19 6 6.5215 -9.4219 2.4284 20 7 6.6013 -10.0529 1.2772 21 14 7.3093 -10.1584 3.9536 22 1 6.2919 -10.9281 4.7137 23 1 8.4158 -11.0635 3.5512 24 1 7.8465 -9.0694 4.8083 25 6 4.5281 -6.7248 3.9807 26 6 3.1405 -3.1460 4.3466 27 6 2.7612 -2.3445 3.2873 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 1.1450 -4.6558 1.4230 38 1 1.8333 -6.0791 3.3096 39 1 2.5033 -6.1620 5.6396 40 1 3.2851 -4.7629 6.4139 41 1 5.5579 -4.3226 6.1007 42 1 5.4028 -4.2459 4.3293 43 1 7.1519 -6.2044 5.8863 44 1 7.7292 -4.7842 4.9811 45 1 7.9543 -6.8901 3.6566 46 1 6.8402 -5.7356 2.8845 47 1 7.0694 -10.9005 1.2200 48 1 4.3497 -6.0583 3.1369 49 1 3.7311 -7.4666 4.0323 50 1 3.6977 -2.7243 5.1701 51 1 3.0220 -1.2965 3.2822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597173931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:38 Heat of formation + Delta-G solvation = -34.682358 kcal Electronic energy + Delta-G solvation = -27047.049360 eV Core-core repulsion = 23524.458795 eV Total energy + Delta-G solvation = -3522.590565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33635 -38.94420 -37.30748 -35.51227 -33.74465 -32.22451 -31.09305 -30.16466 -29.70294 -27.51417 -27.04303 -25.52674 -25.00165 -22.88523 -22.26131 -21.27117 -20.74900 -20.31044 -18.73585 -18.14332 -16.83022 -16.45982 -15.96158 -15.68405 -15.11472 -14.72203 -14.46215 -14.41505 -14.06871 -13.94981 -13.69573 -13.40154 -13.34648 -12.93908 -12.85929 -12.60889 -12.56108 -12.45257 -12.28853 -11.98152 -11.53042 -11.43545 -11.38172 -11.35504 -11.10711 -11.04549 -10.93544 -10.76100 -10.70104 -10.50941 -10.15827 -9.76904 -9.48993 -9.25847 -8.90673 -8.85562 -8.45574 -8.05729 -7.73215 -6.02928 -4.01690 1.43435 1.48981 3.08079 3.35098 3.42549 3.47277 3.82056 4.42189 4.48116 4.48289 4.55858 4.72667 4.83056 4.88246 5.05168 5.08718 5.11732 5.20449 5.27269 5.29584 5.34729 5.45345 5.48860 5.55148 5.56666 5.64608 5.67999 5.70839 5.75646 5.91011 5.93435 5.97776 6.02206 6.10628 6.12692 6.24945 6.33885 6.38305 6.40658 6.46787 6.58890 6.72480 6.77338 6.85069 6.89247 6.97324 7.36347 7.42367 7.52765 7.64203 7.67191 7.92618 8.58886 9.02633 9.61225 11.10405 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.002970 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.903628 B = 9425.920744 C = 9974.147039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.064 3.936 5 O -0.315 6.315 6 C 0.125 3.875 7 C -0.150 4.150 8 C -0.061 4.061 9 C -0.150 4.150 10 C 0.095 3.905 11 N -0.532 5.532 12 C 0.060 3.940 13 C -0.121 4.121 14 C -0.112 4.112 15 C 0.020 3.980 16 H 0.038 0.962 17 C -0.510 4.510 18 H 0.070 0.930 19 C 0.071 3.929 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.263 1.263 25 C 0.070 3.930 26 C -0.071 4.071 27 C -0.212 4.212 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.263 0.737 48 H 0.031 0.969 49 H 0.065 0.935 50 H 0.120 0.880 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 20.799 3.963 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.011 4.011 5 O -0.229 6.229 6 C 0.080 3.920 7 C -0.169 4.169 8 C -0.080 4.080 9 C -0.152 4.152 10 C -0.033 4.033 11 N -0.254 5.254 12 C -0.068 4.068 13 C -0.158 4.158 14 C -0.150 4.150 15 C 0.001 3.999 16 H 0.056 0.944 17 C -0.548 4.548 18 H 0.088 0.912 19 C -0.130 4.130 20 N -0.541 5.541 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.188 1.188 25 C -0.057 4.057 26 C -0.090 4.090 27 C -0.231 4.231 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.083 0.917 50 H 0.137 0.863 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.098 20.249 4.092 22.994 hybrid contribution 0.473 0.259 0.078 0.545 sum -9.625 20.508 4.170 23.035 Atomic orbital electron populations 1.21814 0.94362 1.02612 1.01582 1.21131 0.96962 0.95770 0.97587 1.21782 1.01304 0.94830 1.02406 1.22863 0.99497 0.79846 0.98912 1.86036 1.74384 1.20633 1.41811 1.18954 0.95031 0.90893 0.87091 1.20428 1.04995 0.90829 1.00630 1.20967 0.95275 0.99484 0.92269 1.20659 1.00555 0.94811 0.99178 1.21204 0.91863 0.96044 0.94186 1.62479 1.02673 1.22846 1.37393 1.22028 0.92432 0.93069 0.99296 1.21683 0.94925 0.99038 1.00195 1.21853 1.00662 0.97859 0.94620 1.19160 0.89862 0.93621 0.97293 0.94412 1.20962 1.32919 1.04042 0.96874 0.91165 1.25052 0.95435 0.96829 0.95707 1.69919 1.43240 1.16570 1.24327 0.86835 0.79292 0.79257 0.84006 1.20203 1.21894 1.18787 1.22305 1.00522 0.95252 0.87640 1.20797 0.97758 0.93065 0.97399 1.21133 1.05222 1.00455 0.96262 0.92812 0.92537 0.91769 0.89971 0.92292 0.91725 0.92401 0.92224 0.92132 0.85360 0.85163 0.90159 0.90781 0.92321 0.94982 0.92090 0.93086 0.93084 0.93353 0.92749 0.95039 0.91702 0.86252 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.09 37.16 0.34 -0.79 16 2 C -0.10 -0.77 3.16 -90.62 -0.29 -1.06 16 3 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 4 C 0.06 0.62 4.12 37.16 0.15 0.77 16 5 O -0.31 -4.06 9.67 -19.43 -0.19 -4.25 16 6 C 0.13 1.74 6.69 -39.22 -0.26 1.48 16 7 C -0.15 -2.17 9.99 -39.43 -0.39 -2.56 16 8 C -0.06 -0.90 8.00 -39.61 -0.32 -1.21 16 9 C -0.15 -2.13 4.03 -104.60 -0.42 -2.55 16 10 C 0.10 1.34 5.56 -4.97 -0.03 1.32 16 11 N -0.53 -9.22 4.86 -236.11 -1.15 -10.37 16 12 C 0.06 0.97 4.84 -3.84 -0.02 0.95 16 13 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 14 C -0.11 -2.42 5.27 -26.60 -0.14 -2.56 16 15 C 0.02 0.47 1.94 -91.69 -0.18 0.30 16 16 H 0.04 0.93 5.26 -51.93 -0.27 0.66 16 17 C -0.51 -14.32 8.86 -34.44 -0.31 -14.63 16 18 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 21 Si 0.88 21.95 27.01 -169.99 -4.59 17.36 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.26 -6.34 6.79 56.52 0.38 -5.96 16 25 C 0.07 1.43 3.80 -3.83 -0.01 1.41 16 26 C -0.07 -0.93 8.13 -39.60 -0.32 -1.25 16 27 C -0.21 -2.71 9.04 -39.44 -0.36 -3.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 36 H 0.06 0.56 7.66 -51.93 -0.40 0.17 16 37 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.13 1.84 8.02 -52.48 -0.42 1.42 16 39 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 41 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 42 H 0.03 0.54 6.56 -51.93 -0.34 0.20 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.03 0.67 6.46 -51.93 -0.34 0.34 16 49 H 0.06 1.34 8.12 -51.93 -0.42 0.92 16 50 H 0.12 1.35 8.04 -52.49 -0.42 0.93 16 51 H 0.12 1.28 6.30 -52.49 -0.33 0.95 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -30.90 391.68 -10.95 -41.85 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -9.23 Total: 0.83 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -2.47 Total: -24.33 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.37 Total: -37.37 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.19 Total: -4.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.59 Total: 17.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.90 -10.95 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.169 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds