Wall clock time and date at job start Tue Mar 31 2020 12:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46980 * 2 1 4 4 C 1.52997 * 109.47310 * 120.00258 * 2 1 3 5 5 O 1.42899 * 109.47209 * 64.99971 * 4 2 1 6 6 C 1.35900 * 117.00134 * 179.97438 * 5 4 2 7 7 C 1.38731 * 120.05403 * 179.97438 * 6 5 4 8 8 C 1.38141 * 119.94126 * 179.97438 * 7 6 5 9 9 C 1.38265 * 120.05721 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.94467 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46893 * 90.00178 * 10 9 8 12 12 C 1.46844 * 111.00010 * 66.04645 * 11 10 9 13 13 C 1.53031 * 109.52691 * 174.16099 * 12 11 10 14 14 C 1.53125 * 109.27935 * 59.17796 * 13 12 11 15 15 C 1.53120 * 109.15963 * 302.34974 * 14 13 12 16 16 H 1.09003 * 109.50441 * 297.71516 * 15 14 13 17 17 C 1.50691 * 109.50493 * 177.63394 * 15 14 13 18 18 H 1.08002 * 119.99998 * 275.27111 * 17 15 14 19 19 C 1.37878 * 120.00162 * 95.27229 * 17 15 14 20 20 N 1.31516 * 120.00217 * 185.61030 * 19 17 15 21 21 Si 1.86798 * 119.99883 * 5.60610 * 19 17 15 22 22 H 1.48508 * 109.46925 * 84.78555 * 21 19 17 23 23 H 1.48503 * 109.46938 * 204.78103 * 21 19 17 24 24 H 1.48497 * 109.47359 * 324.78434 * 21 19 17 25 25 C 1.46843 * 110.99949 * 301.83991 * 11 10 9 26 26 C 1.38271 * 120.11194 * 0.27306 * 9 8 7 27 27 C 1.38146 * 120.04947 * 359.45124 * 26 9 8 28 28 H 1.08997 * 109.46969 * 300.00070 * 1 2 3 29 29 H 1.09003 * 109.47050 * 59.99619 * 1 2 3 30 30 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46926 * 240.00433 * 2 1 3 32 32 H 1.09000 * 109.46647 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47069 * 299.99814 * 3 2 1 34 34 H 1.09001 * 109.46938 * 60.00440 * 3 2 1 35 35 H 1.09001 * 109.46919 * 304.99915 * 4 2 1 36 36 H 1.08998 * 109.47168 * 184.99890 * 4 2 1 37 37 H 1.07996 * 120.02958 * 359.96450 * 7 6 5 38 38 H 1.08007 * 119.97366 * 179.97438 * 8 7 6 39 39 H 1.08992 * 109.47139 * 330.00267 * 10 9 8 40 40 H 1.08998 * 109.47065 * 209.99723 * 10 9 8 41 41 H 1.09002 * 109.46575 * 54.13872 * 12 11 10 42 42 H 1.09005 * 109.45479 * 294.17064 * 12 11 10 43 43 H 1.09000 * 109.49958 * 299.23963 * 13 12 11 44 44 H 1.08996 * 109.54051 * 179.14030 * 13 12 11 45 45 H 1.08998 * 109.52464 * 182.44741 * 14 13 12 46 46 H 1.08993 * 109.57265 * 62.27969 * 14 13 12 47 47 H 0.96999 * 120.00445 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.46506 * 65.82190 * 25 11 10 49 49 H 1.09005 * 109.45780 * 305.85166 * 25 11 10 50 50 H 1.07997 * 119.96657 * 179.70326 * 26 9 8 51 51 H 1.07997 * 120.02170 * 180.27416 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0982 1.1919 6 6 2.0406 -2.8858 2.2327 7 6 1.7068 -4.2323 2.2424 8 6 2.0933 -5.0308 3.3013 9 6 2.8119 -4.4891 4.3510 10 6 3.2318 -5.3624 5.5052 11 7 4.5511 -5.9442 5.2243 12 6 5.5863 -4.9037 5.1789 13 6 6.9621 -5.5570 5.0302 14 6 6.9908 -6.3880 3.7444 15 6 5.8724 -7.4326 3.7961 16 1 6.0451 -8.1095 4.6329 17 6 5.8565 -8.2169 2.5095 18 1 5.3242 -7.8350 1.6509 19 6 6.5215 -9.4219 2.4284 20 7 6.6013 -10.0529 1.2772 21 14 7.3093 -10.1584 3.9536 22 1 6.2919 -10.9281 4.7137 23 1 8.4158 -11.0635 3.5512 24 1 7.8465 -9.0694 4.8083 25 6 4.5281 -6.7248 3.9807 26 6 3.1405 -3.1460 4.3466 27 6 2.7612 -2.3445 3.2873 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 1.1450 -4.6558 1.4230 38 1 1.8333 -6.0791 3.3096 39 1 2.5033 -6.1620 5.6396 40 1 3.2851 -4.7629 6.4139 41 1 5.5579 -4.3226 6.1007 42 1 5.4028 -4.2459 4.3293 43 1 7.1519 -6.2044 5.8863 44 1 7.7292 -4.7842 4.9811 45 1 7.9543 -6.8901 3.6566 46 1 6.8402 -5.7356 2.8845 47 1 7.0694 -10.9005 1.2200 48 1 4.3497 -6.0583 3.1369 49 1 3.7311 -7.4666 4.0323 50 1 3.6977 -2.7243 5.1701 51 1 3.0220 -1.2965 3.2822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597173931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:37 Heat of formation + Delta-G solvation = -51.825784 kcal Electronic energy + Delta-G solvation = -27047.792755 eV Core-core repulsion = 23524.458795 eV Total energy + Delta-G solvation = -3523.333960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37319 -40.16754 -38.47565 -36.31314 -35.38442 -34.02665 -32.27393 -31.76815 -30.89070 -28.08483 -27.91976 -26.94888 -26.65888 -24.06789 -23.51949 -22.76461 -21.94372 -21.08430 -20.35117 -19.17610 -18.92661 -17.31367 -17.05965 -16.85501 -16.55898 -15.86153 -15.75063 -15.45214 -15.40955 -15.09442 -14.98240 -14.64884 -14.53092 -14.39885 -14.19434 -14.01915 -13.55788 -13.48487 -13.20434 -12.99143 -12.94902 -12.84017 -12.65740 -12.53562 -12.25869 -12.14657 -12.05439 -11.88108 -11.80711 -11.72320 -11.57000 -11.50012 -11.25689 -11.04700 -10.80914 -10.61803 -9.93735 -9.24315 -8.99118 -8.28207 -6.31361 0.37895 0.42404 1.36953 1.37013 1.49709 2.20758 2.36905 2.73881 3.06507 3.25742 3.71600 3.82069 3.89178 3.92287 3.98690 4.09498 4.17060 4.22160 4.25962 4.31736 4.37551 4.42011 4.47677 4.54477 4.61855 4.66593 4.70774 4.77352 4.78704 4.89009 4.92606 4.94339 4.96185 4.98021 5.04198 5.06830 5.12923 5.16900 5.24623 5.26524 5.29110 5.34301 5.35674 5.39007 5.58690 5.63767 5.68740 5.78145 5.83394 6.18924 6.32500 6.41819 6.45970 6.76963 7.34715 8.89098 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.002970 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.903628 B = 9425.920744 C = 9974.147039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.141 4.141 4 C 0.057 3.943 5 O -0.330 6.330 6 C 0.117 3.883 7 C -0.173 4.173 8 C -0.076 4.076 9 C -0.160 4.160 10 C 0.097 3.903 11 N -0.535 5.535 12 C 0.060 3.940 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.017 3.983 16 H 0.035 0.965 17 C -0.513 4.513 18 H 0.024 0.976 19 C 0.011 3.989 20 N -0.953 5.953 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.290 1.290 24 H -0.245 1.245 25 C 0.087 3.913 26 C -0.068 4.068 27 C -0.211 4.211 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.033 0.967 47 H 0.265 0.735 48 H 0.015 0.985 49 H 0.054 0.946 50 H 0.147 0.853 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 23.455 7.084 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.198 4.198 4 C -0.017 4.017 5 O -0.245 6.245 6 C 0.072 3.928 7 C -0.191 4.191 8 C -0.095 4.095 9 C -0.162 4.162 10 C -0.030 4.030 11 N -0.257 5.257 12 C -0.067 4.067 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.002 4.002 16 H 0.053 0.947 17 C -0.551 4.551 18 H 0.042 0.958 19 C -0.185 4.185 20 N -0.593 5.593 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.216 1.216 24 H -0.168 1.168 25 C -0.041 4.041 26 C -0.087 4.087 27 C -0.230 4.230 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.033 0.967 49 H 0.072 0.928 50 H 0.165 0.835 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.509 22.937 7.225 25.860 hybrid contribution 0.205 -0.479 -1.025 1.150 sum -9.304 22.458 6.200 25.087 Atomic orbital electron populations 1.21800 0.94227 1.01618 1.02571 1.21167 0.97101 0.96786 0.96382 1.21760 1.01450 0.93301 1.03335 1.23138 0.99970 0.78335 1.00301 1.86032 1.74524 1.22214 1.41705 1.19106 0.95117 0.90807 0.87792 1.20544 1.05938 0.91778 1.00886 1.21029 0.96158 0.99323 0.93006 1.20711 1.00915 0.95626 0.98931 1.21287 0.90086 0.96453 0.95166 1.62409 1.04823 1.23825 1.34666 1.22112 0.90945 0.92646 1.01031 1.21642 0.97000 0.99232 0.97316 1.21724 0.98754 0.97564 0.96826 1.19132 0.92628 0.94043 0.94393 0.94707 1.21240 1.31703 1.04626 0.97562 0.95754 1.25944 0.96308 0.97347 0.98933 1.70072 1.45000 1.17332 1.26882 0.85761 0.78471 0.78782 0.80048 1.19211 1.21618 1.16833 1.21883 0.98097 0.95094 0.89062 1.21102 0.97132 0.92415 0.98030 1.21432 1.04291 1.01744 0.95526 0.92004 0.91386 0.93726 0.91186 0.92044 0.90860 0.91429 0.90815 0.91714 0.85744 0.85951 0.90078 0.87662 0.88429 0.95464 0.91818 0.90258 0.94493 0.94769 0.92625 0.96706 0.92786 0.83538 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.09 71.98 0.65 -1.46 16 2 C -0.10 -1.44 3.16 -10.79 -0.03 -1.47 16 3 C -0.14 -1.44 9.19 71.98 0.66 -0.77 16 4 C 0.06 1.02 4.12 71.98 0.30 1.32 16 5 O -0.33 -8.51 9.67 -92.43 -0.89 -9.41 16 6 C 0.12 3.23 6.69 22.50 0.15 3.38 16 7 C -0.17 -5.20 9.99 22.36 0.22 -4.97 16 8 C -0.08 -2.29 8.00 22.25 0.18 -2.11 16 9 C -0.16 -4.29 4.03 -19.85 -0.08 -4.37 16 10 C 0.10 2.49 5.56 85.56 0.48 2.96 16 11 N -0.53 -17.21 4.86 -900.92 -4.38 -21.59 16 12 C 0.06 1.72 4.84 86.32 0.42 2.14 16 13 C -0.11 -3.65 6.09 30.65 0.19 -3.47 16 14 C -0.11 -4.69 5.27 30.68 0.16 -4.53 16 15 C 0.02 0.82 1.94 -11.49 -0.02 0.80 16 16 H 0.03 1.67 5.26 -2.39 -0.01 1.66 16 17 C -0.51 -30.05 8.86 25.60 0.23 -29.82 16 18 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 19 C 0.01 0.67 5.47 84.65 0.46 1.13 16 20 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 21 Si 0.95 45.58 27.01 68.60 1.85 47.43 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.24 -10.98 6.79 99.48 0.68 -10.31 16 25 C 0.09 3.56 3.80 86.33 0.33 3.89 16 26 C -0.07 -1.58 8.13 22.26 0.18 -1.40 16 27 C -0.21 -4.94 9.04 22.36 0.20 -4.73 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.82 7.82 -2.39 -0.02 0.80 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 36 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 37 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.12 3.70 8.02 -2.91 -0.02 3.68 16 39 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 40 H 0.11 2.08 8.00 -2.39 -0.02 2.06 16 41 H 0.10 2.12 8.06 -2.39 -0.02 2.10 16 42 H 0.03 0.82 6.56 -2.38 -0.02 0.81 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 48 H 0.01 0.65 6.46 -2.39 -0.02 0.64 16 49 H 0.05 2.29 8.12 -2.38 -0.02 2.27 16 50 H 0.15 2.58 8.04 -2.91 -0.02 2.55 16 51 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 Total: -1.00 -69.84 391.68 2.39 -67.45 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.84 Total: 20.26 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 4.67 Total: -43.49 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -4.08 Total: -82.24 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.89 Total: -9.41 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.85 Total: 47.43 kcal Total: -69.84 2.39 -67.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.623 kcal (2) G-P(sol) polarization free energy of solvation -69.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds