Wall clock time and date at job start Tue Mar 31 2020 11:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46468 * 2 1 4 4 C 1.53009 * 109.46804 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47126 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47348 * 304.99960 * 5 4 3 7 7 C 1.52991 * 109.47153 * 184.99955 * 5 4 3 8 8 C 1.53004 * 109.47409 * 175.00253 * 7 5 4 9 9 C 1.52997 * 109.47448 * 180.02562 * 8 7 5 10 10 N 1.46508 * 109.47280 * 64.99640 * 5 4 3 11 11 C 1.34768 * 120.00195 * 204.99912 * 10 5 4 12 12 O 1.21283 * 120.00153 * 359.97438 * 11 10 5 13 13 C 1.50698 * 119.99965 * 180.02562 * 11 10 5 14 14 C 1.50701 * 109.47150 * 180.02562 * 13 11 10 15 15 C 1.37636 * 120.12941 * 264.99955 * 14 13 11 16 16 C 1.38611 * 120.25061 * 180.29574 * 15 14 13 17 17 C 1.38653 * 120.50140 * 359.44427 * 16 15 14 18 18 C 1.37598 * 120.24629 * 0.55396 * 17 16 15 19 19 C 1.40704 * 120.12792 * 85.01908 * 14 13 11 20 20 C 1.41387 * 120.24480 * 359.95991 * 19 14 13 21 21 H 1.08006 * 119.99793 * 334.08076 * 20 19 14 22 22 C 1.39940 * 120.00234 * 154.08580 * 20 19 14 23 23 N 1.30822 * 119.99912 * 343.61546 * 22 20 19 24 24 Si 1.86803 * 120.00192 * 163.62649 * 22 20 19 25 25 H 1.48494 * 109.47516 * 89.99468 * 24 22 20 26 26 H 1.48504 * 109.46852 * 209.99866 * 24 22 20 27 27 H 1.48504 * 109.47021 * 329.99095 * 24 22 20 28 28 H 1.08995 * 109.47542 * 59.99977 * 1 2 3 29 29 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47274 * 299.99478 * 1 2 3 31 31 H 1.08997 * 109.47274 * 240.00522 * 2 1 3 32 32 H 1.09001 * 109.47138 * 119.99820 * 2 1 3 33 33 H 1.09002 * 109.47368 * 60.00476 * 3 2 1 34 34 H 1.09000 * 109.47819 * 299.99761 * 3 2 1 35 35 H 1.09002 * 109.46929 * 60.00012 * 4 3 2 36 36 H 1.09001 * 109.46810 * 299.99825 * 4 3 2 37 37 H 1.08999 * 109.47433 * 294.99590 * 7 5 4 38 38 H 1.09002 * 109.47277 * 55.00011 * 7 5 4 39 39 H 1.09004 * 109.46362 * 299.99561 * 8 7 5 40 40 H 1.08994 * 109.47417 * 59.99694 * 8 7 5 41 41 H 1.09002 * 109.47174 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.46956 * 299.99705 * 9 8 7 43 43 H 1.09002 * 109.47510 * 59.99590 * 9 8 7 44 44 H 0.97001 * 119.99217 * 25.00281 * 10 5 4 45 45 H 1.08990 * 109.47195 * 60.00231 * 13 11 10 46 46 H 1.09001 * 109.47170 * 299.99896 * 13 11 10 47 47 H 1.08002 * 119.87271 * 0.02562 * 15 14 13 48 48 H 1.07999 * 119.75152 * 179.70481 * 16 15 14 49 49 H 1.08004 * 119.87985 * 180.29954 * 17 16 15 50 50 H 1.08002 * 120.12910 * 179.74432 * 18 17 16 51 51 H 0.97001 * 120.00439 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8852 0.0000 6 1 3.6448 3.4247 -0.8413 7 6 5.6045 2.8872 -0.1263 8 6 6.1041 4.3279 -0.2510 9 6 7.6288 4.3299 -0.3780 10 7 3.6927 3.5395 1.2524 11 6 3.5658 4.8803 1.3010 12 8 3.7726 5.5454 0.3081 13 6 3.1682 5.5533 2.5894 14 6 3.0970 7.0435 2.3765 15 6 4.1798 7.8372 2.6799 16 6 4.1150 9.2088 2.4909 17 6 2.9655 9.7959 1.9843 18 6 1.8710 9.0220 1.6740 19 6 1.9233 7.6290 1.8673 20 6 0.8048 6.8236 1.5516 21 1 0.9436 5.7841 1.2933 22 6 -0.4818 7.3734 1.5737 23 7 -0.6965 8.5115 2.1820 24 14 -1.8929 6.4821 0.7347 25 1 -2.5399 5.5590 1.7012 26 1 -2.8888 7.4735 0.2544 27 1 -1.3718 5.7055 -0.4188 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9329 0.9290 -0.8909 36 1 3.9336 0.9287 0.8891 37 1 6.0431 2.4260 0.7586 38 1 5.8964 2.3234 -1.0124 39 1 5.6656 4.7891 -1.1360 40 1 5.8122 4.8917 0.6349 41 1 7.9847 5.3563 -0.4673 42 1 8.0676 3.8685 0.5066 43 1 7.9204 3.7663 -1.2643 44 1 3.5277 3.0075 2.0466 45 1 3.9073 5.3307 3.3587 46 1 2.1923 5.1848 2.9056 47 1 5.0818 7.3900 3.0709 48 1 4.9677 9.8245 2.7362 49 1 2.9277 10.8651 1.8365 50 1 0.9752 9.4817 1.2834 51 1 -1.5883 8.8928 2.1971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776981668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:03 Heat of formation + Delta-G solvation = -63.530735 kcal Electronic energy + Delta-G solvation = -27452.874126 eV Core-core repulsion = 23929.032601 eV Total energy + Delta-G solvation = -3523.841525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.60379 -37.62281 -36.48814 -34.84954 -33.57059 -33.19609 -31.69890 -30.63337 -29.39273 -28.05661 -26.58310 -24.95676 -24.39037 -21.66390 -21.19171 -20.86038 -20.63470 -20.18509 -19.22480 -17.11757 -16.45285 -16.09325 -15.45120 -15.23938 -15.11405 -14.48051 -14.21678 -14.08406 -13.58623 -13.55661 -13.46081 -13.11112 -12.90962 -12.81098 -12.55644 -12.44445 -12.03971 -11.66601 -11.62821 -11.52578 -11.47813 -11.23655 -11.11755 -11.05025 -10.94388 -10.90495 -10.87408 -10.64452 -10.60393 -10.35728 -10.33351 -10.18767 -9.42906 -9.32263 -9.11312 -8.99720 -8.51692 -7.25552 -7.23165 -6.69048 -4.28783 2.82988 3.03153 3.08994 3.14320 3.31027 3.45945 3.78502 3.97145 4.52551 4.71219 4.86239 4.93554 5.09153 5.18985 5.23546 5.28531 5.42656 5.50717 5.59858 5.62559 5.67596 5.74789 5.79335 5.83973 5.87805 5.90983 5.91923 6.05083 6.06291 6.10286 6.14799 6.19634 6.29857 6.31914 6.33966 6.35225 6.49358 6.52217 6.56276 6.74709 6.85973 6.98816 7.13731 7.35016 7.47858 7.69916 7.96482 8.06232 8.14665 8.18721 8.37126 8.70411 8.97061 9.00232 9.07317 10.25247 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008594 B = 0.005405 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.145613 B = 5178.752695 C = 7946.490362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.124 4.124 5 C 0.144 3.856 6 H 0.085 0.915 7 C -0.126 4.126 8 C -0.120 4.120 9 C -0.150 4.150 10 N -0.738 5.738 11 C 0.515 3.485 12 O -0.515 6.515 13 C -0.073 4.073 14 C -0.177 4.177 15 C -0.081 4.081 16 C -0.240 4.240 17 C -0.108 4.108 18 C -0.160 4.160 19 C 0.129 3.871 20 C -0.455 4.455 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.796 5.796 24 Si 0.900 3.100 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.262 1.262 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.393 0.607 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.116 0.884 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -14.928 -1.895 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.162 4.162 5 C 0.039 3.961 6 H 0.103 0.897 7 C -0.165 4.165 8 C -0.157 4.157 9 C -0.208 4.208 10 N -0.393 5.393 11 C 0.302 3.698 12 O -0.389 6.389 13 C -0.112 4.112 14 C -0.179 4.179 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.485 4.485 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.422 5.422 24 Si 0.724 3.276 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.185 1.185 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.226 0.774 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.134 0.866 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.713 -14.252 -2.577 15.569 hybrid contribution -0.779 -0.576 0.040 0.970 sum 4.933 -14.828 -2.538 15.832 Atomic orbital electron populations 1.21786 0.95986 1.01250 1.02188 1.21520 0.95865 0.97026 1.01557 1.21644 0.94904 0.96438 1.03040 1.21871 0.96034 0.95812 1.02442 1.20940 0.93987 0.92519 0.88666 0.89664 1.22027 0.95428 0.97761 1.01257 1.21588 0.94317 0.96102 1.03742 1.21797 0.97034 1.01259 1.00681 1.46194 1.72892 1.07514 1.12651 1.21094 0.75920 0.81152 0.91584 1.90683 1.47753 1.63817 1.36623 1.20275 1.02200 0.95098 0.93667 1.19045 0.96834 0.91529 1.10503 1.20281 0.95890 0.93687 1.00119 1.20290 0.98202 0.94350 1.13054 1.20664 0.94274 0.97353 1.00332 1.21281 0.97540 0.94327 1.04738 1.17321 0.90897 0.92023 0.87049 1.19447 0.90288 0.97661 1.41055 0.90806 1.25862 1.00358 0.94681 0.93089 1.69821 1.23468 1.17227 1.31692 0.86448 0.80413 0.80052 0.80650 1.19577 1.20136 1.18547 0.92727 0.93070 0.92559 0.92359 0.92258 0.91377 0.91836 0.90979 0.91706 0.92343 0.91931 0.91539 0.91120 0.92986 0.93445 0.93465 0.77403 0.90915 0.88811 0.89903 0.89787 0.89693 0.86637 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.12 -1.31 5.10 -26.73 -0.14 -1.45 16 4 C -0.12 -1.20 4.75 -26.73 -0.13 -1.33 16 5 C 0.14 1.83 2.26 -67.93 -0.15 1.67 16 6 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 7 C -0.13 -1.50 4.89 -26.73 -0.13 -1.64 16 8 C -0.12 -1.76 4.54 -26.73 -0.12 -1.89 16 9 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 10 N -0.74 -10.29 4.48 -53.81 -0.24 -10.53 16 11 C 0.51 9.62 6.03 -10.99 -0.07 9.56 16 12 O -0.52 -11.70 13.17 5.55 0.07 -11.62 16 13 C -0.07 -1.41 5.18 -29.04 -0.15 -1.56 16 14 C -0.18 -4.26 4.43 -103.91 -0.46 -4.72 16 15 C -0.08 -1.89 9.66 -39.66 -0.38 -2.28 16 16 C -0.24 -5.65 10.05 -39.29 -0.39 -6.04 16 17 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 18 C -0.16 -4.30 8.68 -38.87 -0.34 -4.64 16 19 C 0.13 3.47 5.56 -106.83 -0.59 2.87 16 20 C -0.45 -11.97 8.14 -37.75 -0.31 -12.28 16 21 H 0.07 1.89 6.68 -52.48 -0.35 1.54 16 22 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 23 N -0.80 -20.72 10.97 55.55 0.61 -20.11 16 24 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.11 7.85 -51.93 -0.41 0.71 16 40 H 0.07 1.23 5.64 -51.93 -0.29 0.94 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.39 4.41 8.60 -40.82 -0.35 4.06 16 45 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 46 H 0.09 1.81 7.06 -51.93 -0.37 1.44 16 47 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 48 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 49 H 0.08 1.89 8.06 -52.48 -0.42 1.46 16 50 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 51 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -29.61 403.50 -10.99 -40.59 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -9.21 Total: 10.37 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -3.27 Total: -28.75 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.37 Total: -30.64 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.07 Total: -11.62 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.61 -10.99 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776981668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.937 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds