Wall clock time and date at job start Tue Mar 31 2020 11:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46468 * 2 1 4 4 C 1.53009 * 109.46804 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47126 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47348 * 304.99960 * 5 4 3 7 7 C 1.52991 * 109.47153 * 184.99955 * 5 4 3 8 8 C 1.53004 * 109.47409 * 175.00253 * 7 5 4 9 9 C 1.52997 * 109.47448 * 180.02562 * 8 7 5 10 10 N 1.46508 * 109.47280 * 64.99640 * 5 4 3 11 11 C 1.34768 * 120.00195 * 204.99912 * 10 5 4 12 12 O 1.21283 * 120.00153 * 359.97438 * 11 10 5 13 13 C 1.50698 * 119.99965 * 180.02562 * 11 10 5 14 14 C 1.50701 * 109.47150 * 180.02562 * 13 11 10 15 15 C 1.37636 * 120.12941 * 264.99955 * 14 13 11 16 16 C 1.38611 * 120.25061 * 180.29574 * 15 14 13 17 17 C 1.38653 * 120.50140 * 359.44427 * 16 15 14 18 18 C 1.37598 * 120.24629 * 0.55396 * 17 16 15 19 19 C 1.40704 * 120.12792 * 85.01908 * 14 13 11 20 20 C 1.41387 * 120.24480 * 359.95991 * 19 14 13 21 21 H 1.08006 * 119.99793 * 334.08076 * 20 19 14 22 22 C 1.39940 * 120.00234 * 154.08580 * 20 19 14 23 23 N 1.30822 * 119.99912 * 343.61546 * 22 20 19 24 24 Si 1.86803 * 120.00192 * 163.62649 * 22 20 19 25 25 H 1.48494 * 109.47516 * 89.99468 * 24 22 20 26 26 H 1.48504 * 109.46852 * 209.99866 * 24 22 20 27 27 H 1.48504 * 109.47021 * 329.99095 * 24 22 20 28 28 H 1.08995 * 109.47542 * 59.99977 * 1 2 3 29 29 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47274 * 299.99478 * 1 2 3 31 31 H 1.08997 * 109.47274 * 240.00522 * 2 1 3 32 32 H 1.09001 * 109.47138 * 119.99820 * 2 1 3 33 33 H 1.09002 * 109.47368 * 60.00476 * 3 2 1 34 34 H 1.09000 * 109.47819 * 299.99761 * 3 2 1 35 35 H 1.09002 * 109.46929 * 60.00012 * 4 3 2 36 36 H 1.09001 * 109.46810 * 299.99825 * 4 3 2 37 37 H 1.08999 * 109.47433 * 294.99590 * 7 5 4 38 38 H 1.09002 * 109.47277 * 55.00011 * 7 5 4 39 39 H 1.09004 * 109.46362 * 299.99561 * 8 7 5 40 40 H 1.08994 * 109.47417 * 59.99694 * 8 7 5 41 41 H 1.09002 * 109.47174 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.46956 * 299.99705 * 9 8 7 43 43 H 1.09002 * 109.47510 * 59.99590 * 9 8 7 44 44 H 0.97001 * 119.99217 * 25.00281 * 10 5 4 45 45 H 1.08990 * 109.47195 * 60.00231 * 13 11 10 46 46 H 1.09001 * 109.47170 * 299.99896 * 13 11 10 47 47 H 1.08002 * 119.87271 * 0.02562 * 15 14 13 48 48 H 1.07999 * 119.75152 * 179.70481 * 16 15 14 49 49 H 1.08004 * 119.87985 * 180.29954 * 17 16 15 50 50 H 1.08002 * 120.12910 * 179.74432 * 18 17 16 51 51 H 0.97001 * 120.00439 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8852 0.0000 6 1 3.6448 3.4247 -0.8413 7 6 5.6045 2.8872 -0.1263 8 6 6.1041 4.3279 -0.2510 9 6 7.6288 4.3299 -0.3780 10 7 3.6927 3.5395 1.2524 11 6 3.5658 4.8803 1.3010 12 8 3.7726 5.5454 0.3081 13 6 3.1682 5.5533 2.5894 14 6 3.0970 7.0435 2.3765 15 6 4.1798 7.8372 2.6799 16 6 4.1150 9.2088 2.4909 17 6 2.9655 9.7959 1.9843 18 6 1.8710 9.0220 1.6740 19 6 1.9233 7.6290 1.8673 20 6 0.8048 6.8236 1.5516 21 1 0.9436 5.7841 1.2933 22 6 -0.4818 7.3734 1.5737 23 7 -0.6965 8.5115 2.1820 24 14 -1.8929 6.4821 0.7347 25 1 -2.5399 5.5590 1.7012 26 1 -2.8888 7.4735 0.2544 27 1 -1.3718 5.7055 -0.4188 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9329 0.9290 -0.8909 36 1 3.9336 0.9287 0.8891 37 1 6.0431 2.4260 0.7586 38 1 5.8964 2.3234 -1.0124 39 1 5.6656 4.7891 -1.1360 40 1 5.8122 4.8917 0.6349 41 1 7.9847 5.3563 -0.4673 42 1 8.0676 3.8685 0.5066 43 1 7.9204 3.7663 -1.2643 44 1 3.5277 3.0075 2.0466 45 1 3.9073 5.3307 3.3587 46 1 2.1923 5.1848 2.9056 47 1 5.0818 7.3900 3.0709 48 1 4.9677 9.8245 2.7362 49 1 2.9277 10.8651 1.8365 50 1 0.9752 9.4817 1.2834 51 1 -1.5883 8.8928 2.1971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776981668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:02 Heat of formation + Delta-G solvation = -77.549309 kcal Electronic energy + Delta-G solvation = -27453.482017 eV Core-core repulsion = 23929.032601 eV Total energy + Delta-G solvation = -3524.449416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99833 -39.32864 -37.74771 -35.78991 -35.49049 -34.39572 -33.34386 -31.77410 -31.30690 -29.08595 -28.21111 -26.82065 -25.33428 -22.85390 -22.66625 -22.37894 -21.59416 -21.41868 -20.88724 -19.05101 -17.77491 -17.46369 -17.05620 -16.55532 -16.28815 -16.05044 -15.62395 -15.38431 -15.17136 -14.75476 -14.57683 -14.39177 -14.32088 -14.09860 -13.83684 -13.52852 -13.43075 -13.36803 -12.91104 -12.86310 -12.75445 -12.62740 -12.59160 -12.47757 -12.35223 -12.14008 -12.01303 -11.89249 -11.83136 -11.45880 -11.37619 -11.30963 -11.21597 -11.16304 -11.01686 -10.54400 -9.77244 -9.21240 -9.13723 -8.59078 -6.27678 1.00706 1.15048 1.33856 1.44971 1.52503 1.99238 2.18946 2.51135 2.79922 3.62451 3.79972 4.05759 4.06735 4.17439 4.20698 4.24875 4.32288 4.41561 4.43837 4.49502 4.55113 4.63788 4.65072 4.71992 4.72844 4.82966 4.85349 4.88177 4.93048 4.99045 5.03593 5.08208 5.12384 5.14790 5.20346 5.21577 5.29724 5.34843 5.37685 5.39823 5.44171 5.53813 5.56317 5.59324 5.79012 5.81757 6.05567 6.18452 6.22701 6.43631 6.73641 6.84742 7.00900 7.13174 7.61921 8.37510 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008594 B = 0.005405 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.145613 B = 5178.752695 C = 7946.490362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.124 4.124 4 C -0.111 4.111 5 C 0.142 3.858 6 H 0.049 0.951 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.145 4.145 10 N -0.718 5.718 11 C 0.518 3.482 12 O -0.563 6.563 13 C -0.072 4.072 14 C -0.181 4.181 15 C -0.092 4.092 16 C -0.242 4.242 17 C -0.119 4.119 18 C -0.194 4.194 19 C 0.097 3.903 20 C -0.479 4.479 21 H 0.070 0.930 22 C 0.037 3.963 23 N -0.827 5.827 24 Si 0.967 3.033 25 H -0.254 1.254 26 H -0.268 1.268 27 H -0.269 1.269 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.410 0.590 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.095 0.905 51 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -18.022 -1.265 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C -0.161 4.161 4 C -0.149 4.149 5 C 0.038 3.962 6 H 0.067 0.933 7 C -0.156 4.156 8 C -0.156 4.156 9 C -0.202 4.202 10 N -0.372 5.372 11 C 0.306 3.694 12 O -0.441 6.441 13 C -0.112 4.112 14 C -0.183 4.183 15 C -0.110 4.110 16 C -0.262 4.262 17 C -0.137 4.137 18 C -0.214 4.214 19 C 0.095 3.905 20 C -0.509 4.509 21 H 0.088 0.912 22 C -0.177 4.177 23 N -0.454 5.454 24 Si 0.789 3.211 25 H -0.179 1.179 26 H -0.193 1.193 27 H -0.194 1.194 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.246 0.754 45 H 0.125 0.875 46 H 0.110 0.890 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.121 0.879 50 H 0.113 0.887 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.034 -17.388 -1.914 18.854 hybrid contribution -1.096 0.419 -0.135 1.181 sum 5.938 -16.969 -2.049 18.094 Atomic orbital electron populations 1.21819 0.96571 1.01890 1.01276 1.21484 0.95350 0.95761 1.02783 1.21633 0.95826 0.97416 1.01273 1.21815 0.95002 0.93566 1.04524 1.21050 0.94829 0.93797 0.86549 0.93283 1.21973 0.94291 0.96118 1.03211 1.21502 0.95967 0.97402 1.00769 1.21750 0.95094 1.01154 1.02224 1.45967 1.71165 1.06051 1.13999 1.20874 0.75572 0.82499 0.90494 1.90676 1.50241 1.65232 1.37945 1.20288 1.03275 0.92489 0.95144 1.19527 0.95993 0.94173 1.08604 1.20700 0.96770 0.93795 0.99705 1.20693 0.98501 0.95112 1.11854 1.20928 0.94214 0.98336 1.00217 1.21287 0.97906 0.95179 1.06981 1.17710 0.92414 0.92291 0.88106 1.19580 0.91181 0.97658 1.42514 0.91160 1.26628 1.02498 0.95413 0.93182 1.69882 1.24396 1.18517 1.32569 0.85432 0.77293 0.79034 0.79383 1.17864 1.19289 1.19357 0.93737 0.91648 0.93436 0.91258 0.90771 0.92819 0.94088 0.89121 0.89214 0.90256 0.89774 0.94845 0.94069 0.94054 0.91886 0.91754 0.75420 0.87506 0.88962 0.86825 0.86876 0.87856 0.88690 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.91 71.98 0.71 -2.04 16 2 C -0.12 -1.82 5.93 30.59 0.18 -1.63 16 3 C -0.12 -2.47 5.10 30.60 0.16 -2.31 16 4 C -0.11 -1.84 4.75 30.60 0.15 -1.69 16 5 C 0.14 3.44 2.26 44.99 0.10 3.54 16 6 H 0.05 1.57 7.58 -2.39 -0.02 1.56 16 7 C -0.12 -2.52 4.89 30.59 0.15 -2.38 16 8 C -0.12 -3.44 4.54 30.59 0.14 -3.30 16 9 C -0.14 -3.34 9.91 71.98 0.71 -2.63 16 10 N -0.72 -19.20 4.48 -442.55 -1.98 -21.19 16 11 C 0.52 19.46 6.03 87.66 0.53 19.99 16 12 O -0.56 -26.57 13.17 -3.04 -0.04 -26.61 16 13 C -0.07 -2.78 5.18 29.10 0.15 -2.63 16 14 C -0.18 -8.81 4.43 -19.40 -0.09 -8.90 16 15 C -0.09 -4.20 9.66 22.22 0.21 -3.98 16 16 C -0.24 -11.30 10.05 22.46 0.23 -11.07 16 17 C -0.12 -5.99 10.02 22.22 0.22 -5.77 16 18 C -0.19 -10.96 8.68 22.73 0.20 -10.76 16 19 C 0.10 5.40 5.56 -21.29 -0.12 5.28 16 20 C -0.48 -26.27 8.14 23.46 0.19 -26.08 16 21 H 0.07 3.76 6.68 -2.91 -0.02 3.74 16 22 C 0.04 1.93 5.16 85.26 0.44 2.37 16 23 N -0.83 -44.63 10.97 21.82 0.24 -44.39 16 24 Si 0.97 39.92 29.59 68.60 2.03 41.95 16 25 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 26 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.21 7.75 -2.39 -0.02 1.19 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.03 1.16 7.85 -2.38 -0.02 1.14 16 40 H 0.04 1.43 5.64 -2.39 -0.01 1.42 16 41 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.41 8.24 8.60 -92.71 -0.80 7.45 16 45 H 0.11 3.30 8.05 -2.39 -0.02 3.28 16 46 H 0.09 3.56 7.06 -2.39 -0.02 3.55 16 47 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 48 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 49 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 50 H 0.10 5.62 6.22 -2.91 -0.02 5.60 16 51 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -68.66 403.50 4.60 -64.06 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: 0.09 Total: 40.17 kcal Atomic # 6 Polarization: -58.26 SS G_CDS: 4.27 Total: -53.99 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -1.74 Total: -65.58 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -68.66 4.60 -64.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776981668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.492 kcal (2) G-P(sol) polarization free energy of solvation -68.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds