Wall clock time and date at job start Tue Mar 31 2020 12:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47335 * 2 1 4 4 H 1.08992 * 110.05436 * 53.57985 * 3 2 1 5 5 C 1.54266 * 110.02903 * 292.16571 * 3 2 1 6 6 C 1.54894 * 104.19686 * 264.32183 * 5 3 2 7 7 C 1.54963 * 102.77525 * 322.08963 * 6 5 3 8 8 C 1.53873 * 110.02999 * 175.00059 * 3 2 1 9 9 H 1.08999 * 110.03633 * 359.94641 * 8 3 2 10 10 C 1.53004 * 110.03122 * 238.56669 * 8 3 2 11 11 N 1.46893 * 109.47275 * 175.69029 * 10 8 3 12 12 C 1.46902 * 111.00077 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.46815 * 35.00207 * 12 11 10 14 14 C 1.53005 * 109.46996 * 275.00304 * 12 11 10 15 15 C 1.50702 * 109.47288 * 155.00062 * 12 11 10 16 16 C 1.38297 * 119.93318 * 219.99985 * 15 12 11 17 17 C 1.38095 * 120.07013 * 179.97438 * 16 15 12 18 18 C 1.38878 * 119.92880 * 0.02562 * 17 16 15 19 19 O 1.35760 * 120.06871 * 180.02562 * 18 17 16 20 20 C 1.34830 * 116.99828 * 354.45579 * 19 18 17 21 21 H 1.08011 * 119.99812 * 5.06571 * 20 19 18 22 22 C 1.38649 * 120.00275 * 185.05545 * 20 19 18 23 23 N 1.31557 * 120.00451 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99734 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47794 * 89.99578 * 24 22 20 26 26 H 1.48504 * 109.47072 * 209.99431 * 24 22 20 27 27 H 1.48501 * 109.47164 * 329.99225 * 24 22 20 28 28 C 1.38878 * 119.86543 * 359.97438 * 18 17 16 29 29 C 1.38096 * 119.92776 * 0.02562 * 28 18 17 30 30 H 1.09004 * 109.46857 * 59.99828 * 1 2 3 31 31 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47511 * 300.00354 * 1 2 3 33 33 H 1.08999 * 109.47062 * 239.99919 * 2 1 3 34 34 H 1.09004 * 109.46857 * 120.00172 * 2 1 3 35 35 H 1.08993 * 110.48976 * 23.00164 * 5 3 2 36 36 H 1.09000 * 110.48418 * 145.64914 * 5 3 2 37 37 H 1.09005 * 110.75056 * 80.37466 * 6 5 3 38 38 H 1.08994 * 110.75833 * 203.55794 * 6 5 3 39 39 H 1.09003 * 110.47767 * 279.22753 * 7 6 5 40 40 H 1.09005 * 110.52860 * 156.56602 * 7 6 5 41 41 H 1.09003 * 109.46529 * 55.69084 * 10 8 3 42 42 H 1.09002 * 109.47045 * 295.69268 * 10 8 3 43 43 H 1.00898 * 111.00563 * 303.95370 * 11 10 8 44 44 H 1.08996 * 109.47007 * 59.99790 * 14 12 11 45 45 H 1.09004 * 109.46366 * 180.02562 * 14 12 11 46 46 H 1.08997 * 109.46800 * 299.99836 * 14 12 11 47 47 H 1.08000 * 119.96365 * 0.25760 * 16 15 12 48 48 H 1.07999 * 120.03503 * 180.02562 * 17 16 15 49 49 H 0.96994 * 120.00325 * 180.02562 * 23 22 20 50 50 H 1.08001 * 120.03375 * 179.97438 * 28 18 17 51 51 H 1.08002 * 119.96631 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9975 0.8239 5 6 1.7006 2.1229 -1.3422 6 6 2.9864 1.9544 -2.1894 7 6 4.1135 2.1488 -1.1439 8 6 3.5735 1.4593 0.1260 9 1 3.9543 0.4399 0.1881 10 6 3.9887 2.2499 1.3684 11 7 5.4461 2.1716 1.5342 12 6 5.8820 2.9206 2.7204 13 1 5.1275 2.8339 3.5023 14 6 6.0688 4.3941 2.3530 15 6 7.1882 2.3575 3.2182 16 6 7.4097 2.2256 4.5769 17 6 8.6054 1.7094 5.0361 18 6 9.5862 1.3231 4.1319 19 8 10.7625 0.8148 4.5802 20 6 10.9620 0.8177 5.9137 21 1 10.1716 1.1366 6.5773 22 6 12.1815 0.4113 6.4332 23 7 12.3764 0.4146 7.7342 24 14 13.5485 -0.1397 5.2855 25 1 14.3806 1.0311 4.9086 26 1 14.3952 -1.1480 5.9724 27 1 12.9566 -0.7404 4.0632 28 6 9.3607 1.4567 2.7681 29 6 8.1629 1.9736 2.3152 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.8595 1.6224 -1.8218 36 1 1.4804 3.1794 -1.1894 37 1 3.0332 0.9566 -2.6260 38 1 3.0400 2.7171 -2.9661 39 1 4.2835 3.2095 -0.9592 40 1 5.0323 1.6668 -1.4783 41 1 3.4998 1.8289 2.2470 42 1 3.6917 3.2922 1.2518 43 1 5.7539 1.2118 1.5798 44 1 5.1240 4.8013 1.9930 45 1 6.3926 4.9497 3.2332 46 1 6.8232 4.4807 1.5712 47 1 6.6450 2.5223 5.2794 48 1 8.7777 1.6063 6.0973 49 1 13.2297 0.1307 8.0976 50 1 10.1217 1.1576 2.0625 51 1 7.9871 2.0783 1.2547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834878560.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:48 Heat of formation + Delta-G solvation = -34.302599 kcal Electronic energy + Delta-G solvation = -26137.403570 eV Core-core repulsion = 22614.829472 eV Total energy + Delta-G solvation = -3522.574098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.56701 -39.16052 -37.52017 -35.48933 -33.26556 -32.42410 -31.62001 -30.27397 -28.63822 -28.07318 -27.76467 -25.35842 -24.49593 -22.68224 -22.23170 -21.74728 -20.24754 -20.04616 -19.39260 -17.83422 -17.30911 -16.26945 -16.00213 -15.27767 -15.14291 -14.72791 -14.39747 -14.19704 -13.90258 -13.86132 -13.65925 -13.56479 -13.43344 -12.97990 -12.84631 -12.62814 -12.32520 -12.26239 -12.16969 -12.02021 -11.82742 -11.73575 -11.39617 -11.26442 -11.10938 -10.91787 -10.81996 -10.71797 -10.67906 -10.64466 -10.61434 -10.48868 -10.32281 -10.11876 -9.39726 -8.87078 -8.35662 -8.25297 -7.31925 -6.42580 -4.09270 2.13220 2.19964 3.21425 3.25271 3.39826 4.07587 4.22977 4.36902 4.42879 4.47146 4.58564 4.85592 4.91869 4.95310 4.98034 5.05568 5.09397 5.16670 5.28737 5.37452 5.41074 5.42625 5.44937 5.48848 5.55535 5.63515 5.66634 5.67417 5.68340 5.77168 5.80208 5.83224 5.84876 5.94618 5.99637 6.02047 6.03230 6.14267 6.14898 6.21187 6.30489 6.35642 6.44433 6.58743 6.77679 6.98618 7.06760 7.27658 7.36233 7.51513 7.61610 7.79294 8.03160 8.92761 9.55389 10.65068 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002186 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.025766 B =12807.970115 C =12841.547273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.088 4.088 4 H 0.069 0.931 5 C -0.121 4.121 6 C -0.129 4.129 7 C -0.104 4.104 8 C -0.086 4.086 9 H 0.071 0.929 10 C 0.066 3.934 11 N -0.682 5.682 12 C 0.141 3.859 13 H 0.040 0.960 14 C -0.131 4.131 15 C -0.183 4.183 16 C -0.067 4.067 17 C -0.222 4.222 18 C 0.160 3.840 19 O -0.218 6.218 20 C -0.389 4.389 21 H 0.106 0.894 22 C 0.063 3.937 23 N -0.880 5.880 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.260 1.260 28 C -0.195 4.195 29 C -0.057 4.057 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.069 0.931 43 H 0.343 0.657 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.132 0.868 49 H 0.279 0.721 50 H 0.116 0.884 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.033 3.141 -16.518 26.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.107 4.107 4 H 0.088 0.912 5 C -0.158 4.158 6 C -0.166 4.166 7 C -0.142 4.142 8 C -0.105 4.105 9 H 0.089 0.911 10 C -0.063 4.063 11 N -0.314 5.314 12 C 0.032 3.968 13 H 0.058 0.942 14 C -0.189 4.189 15 C -0.184 4.184 16 C -0.086 4.086 17 C -0.241 4.241 18 C 0.108 3.892 19 O -0.123 6.123 20 C -0.465 4.465 21 H 0.123 0.877 22 C -0.141 4.141 23 N -0.518 5.518 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.214 4.214 29 C -0.076 4.076 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.162 0.838 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.150 0.850 49 H 0.089 0.911 50 H 0.134 0.866 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.550 3.512 -16.863 26.814 hybrid contribution 0.322 -0.811 0.692 1.113 sum -20.228 2.701 -16.171 26.038 Atomic orbital electron populations 1.21833 0.96095 1.01411 1.01763 1.21605 0.95616 0.96274 1.01929 1.21811 0.94998 0.96010 0.97865 0.91224 1.22450 0.97774 1.00198 0.95385 1.22552 0.95206 1.01178 0.97687 1.22272 0.97395 1.00948 0.93556 1.21845 0.94070 0.99470 0.95086 0.91088 1.22118 0.88317 1.00057 0.95808 1.60595 1.11363 1.18497 1.40901 1.20157 0.93125 0.93733 0.89794 0.94196 1.21762 1.01113 0.94620 1.01426 1.19349 0.96762 1.09047 0.93278 1.20641 0.96255 0.97395 0.94313 1.21233 0.94678 1.07480 1.00695 1.19167 0.86134 0.91270 0.92609 1.83577 1.32060 1.70418 1.26217 1.20763 1.01696 1.46025 0.78021 0.87671 1.24472 0.97515 0.96162 0.95903 1.69644 1.25743 1.45821 1.10564 0.86175 0.80773 0.78919 0.80997 1.19876 1.20794 1.18361 1.20253 0.99184 1.09179 0.92786 1.20497 0.91785 0.96488 0.98782 0.92619 0.92966 0.92861 0.91978 0.92076 0.91689 0.91906 0.91927 0.91992 0.91341 0.91653 0.95727 0.91226 0.83789 0.93548 0.92726 0.92022 0.87559 0.85041 0.91053 0.86605 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.75 37.16 0.36 -0.62 16 2 C -0.12 -0.84 5.11 -26.73 -0.14 -0.98 16 3 C -0.09 -0.66 2.58 -89.50 -0.23 -0.89 16 4 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 5 C -0.12 -0.85 6.21 -25.07 -0.16 -1.01 16 6 C -0.13 -0.96 6.91 -24.70 -0.17 -1.13 16 7 C -0.10 -0.90 6.18 -25.03 -0.15 -1.05 16 8 C -0.09 -0.73 2.74 -89.50 -0.25 -0.98 16 9 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 10 C 0.07 0.65 4.54 -3.83 -0.02 0.63 16 11 N -0.68 -7.78 5.49 -107.95 -0.59 -8.37 16 12 C 0.14 1.83 2.82 -68.86 -0.19 1.63 16 13 H 0.04 0.52 7.66 -51.93 -0.40 0.12 16 14 C -0.13 -1.60 9.39 37.16 0.35 -1.25 16 15 C -0.18 -2.94 4.72 -104.58 -0.49 -3.43 16 16 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 17 C -0.22 -4.75 9.17 -39.40 -0.36 -5.11 16 18 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 19 O -0.22 -5.75 8.59 0.02 0.00 -5.75 16 20 C -0.39 -10.98 9.95 30.88 0.31 -10.68 16 21 H 0.11 3.03 5.44 -52.48 -0.29 2.74 16 22 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 23 N -0.88 -25.44 13.96 55.48 0.77 -24.66 16 24 Si 0.91 21.72 28.62 -169.99 -4.86 16.85 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 28 C -0.19 -3.83 9.99 -39.40 -0.39 -4.22 16 29 C -0.06 -0.95 9.00 -39.61 -0.36 -1.31 16 30 H 0.05 0.33 6.55 -51.93 -0.34 -0.01 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.42 6.27 -51.93 -0.33 0.10 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.64 7.77 -51.93 -0.40 0.24 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.02 0.25 8.05 -51.93 -0.42 -0.17 16 42 H 0.07 0.69 7.32 -51.93 -0.38 0.31 16 43 H 0.34 4.11 7.99 -39.29 -0.31 3.80 16 44 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.11 1.66 8.03 -52.49 -0.42 1.24 16 48 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 49 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 51 H 0.12 1.77 7.71 -52.49 -0.40 1.37 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -28.01 397.84 -10.27 -38.28 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.96 Total: 4.54 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -2.63 Total: -26.89 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.18 Total: -33.03 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.00 Total: -5.75 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.86 Total: 16.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.01 -10.27 -38.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834878560.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.977 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds