Wall clock time and date at job start Tue Mar 31 2020 12:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47335 * 2 1 4 4 H 1.08992 * 110.05436 * 53.57985 * 3 2 1 5 5 C 1.54266 * 110.02903 * 292.16571 * 3 2 1 6 6 C 1.54894 * 104.19686 * 264.32183 * 5 3 2 7 7 C 1.54963 * 102.77525 * 322.08963 * 6 5 3 8 8 C 1.53873 * 110.02999 * 175.00059 * 3 2 1 9 9 H 1.08999 * 110.03633 * 359.94641 * 8 3 2 10 10 C 1.53004 * 110.03122 * 238.56669 * 8 3 2 11 11 N 1.46893 * 109.47275 * 175.69029 * 10 8 3 12 12 C 1.46902 * 111.00077 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.46815 * 35.00207 * 12 11 10 14 14 C 1.53005 * 109.46996 * 275.00304 * 12 11 10 15 15 C 1.50702 * 109.47288 * 155.00062 * 12 11 10 16 16 C 1.38297 * 119.93318 * 219.99985 * 15 12 11 17 17 C 1.38095 * 120.07013 * 179.97438 * 16 15 12 18 18 C 1.38878 * 119.92880 * 0.02562 * 17 16 15 19 19 O 1.35760 * 120.06871 * 180.02562 * 18 17 16 20 20 C 1.34830 * 116.99828 * 354.45579 * 19 18 17 21 21 H 1.08011 * 119.99812 * 5.06571 * 20 19 18 22 22 C 1.38649 * 120.00275 * 185.05545 * 20 19 18 23 23 N 1.31557 * 120.00451 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99734 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47794 * 89.99578 * 24 22 20 26 26 H 1.48504 * 109.47072 * 209.99431 * 24 22 20 27 27 H 1.48501 * 109.47164 * 329.99225 * 24 22 20 28 28 C 1.38878 * 119.86543 * 359.97438 * 18 17 16 29 29 C 1.38096 * 119.92776 * 0.02562 * 28 18 17 30 30 H 1.09004 * 109.46857 * 59.99828 * 1 2 3 31 31 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47511 * 300.00354 * 1 2 3 33 33 H 1.08999 * 109.47062 * 239.99919 * 2 1 3 34 34 H 1.09004 * 109.46857 * 120.00172 * 2 1 3 35 35 H 1.08993 * 110.48976 * 23.00164 * 5 3 2 36 36 H 1.09000 * 110.48418 * 145.64914 * 5 3 2 37 37 H 1.09005 * 110.75056 * 80.37466 * 6 5 3 38 38 H 1.08994 * 110.75833 * 203.55794 * 6 5 3 39 39 H 1.09003 * 110.47767 * 279.22753 * 7 6 5 40 40 H 1.09005 * 110.52860 * 156.56602 * 7 6 5 41 41 H 1.09003 * 109.46529 * 55.69084 * 10 8 3 42 42 H 1.09002 * 109.47045 * 295.69268 * 10 8 3 43 43 H 1.00898 * 111.00563 * 303.95370 * 11 10 8 44 44 H 1.08996 * 109.47007 * 59.99790 * 14 12 11 45 45 H 1.09004 * 109.46366 * 180.02562 * 14 12 11 46 46 H 1.08997 * 109.46800 * 299.99836 * 14 12 11 47 47 H 1.08000 * 119.96365 * 0.25760 * 16 15 12 48 48 H 1.07999 * 120.03503 * 180.02562 * 17 16 15 49 49 H 0.96994 * 120.00325 * 180.02562 * 23 22 20 50 50 H 1.08001 * 120.03375 * 179.97438 * 28 18 17 51 51 H 1.08002 * 119.96631 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9975 0.8239 5 6 1.7006 2.1229 -1.3422 6 6 2.9864 1.9544 -2.1894 7 6 4.1135 2.1488 -1.1439 8 6 3.5735 1.4593 0.1260 9 1 3.9543 0.4399 0.1881 10 6 3.9887 2.2499 1.3684 11 7 5.4461 2.1716 1.5342 12 6 5.8820 2.9206 2.7204 13 1 5.1275 2.8339 3.5023 14 6 6.0688 4.3941 2.3530 15 6 7.1882 2.3575 3.2182 16 6 7.4097 2.2256 4.5769 17 6 8.6054 1.7094 5.0361 18 6 9.5862 1.3231 4.1319 19 8 10.7625 0.8148 4.5802 20 6 10.9620 0.8177 5.9137 21 1 10.1716 1.1366 6.5773 22 6 12.1815 0.4113 6.4332 23 7 12.3764 0.4146 7.7342 24 14 13.5485 -0.1397 5.2855 25 1 14.3806 1.0311 4.9086 26 1 14.3952 -1.1480 5.9724 27 1 12.9566 -0.7404 4.0632 28 6 9.3607 1.4567 2.7681 29 6 8.1629 1.9736 2.3152 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.8595 1.6224 -1.8218 36 1 1.4804 3.1794 -1.1894 37 1 3.0332 0.9566 -2.6260 38 1 3.0400 2.7171 -2.9661 39 1 4.2835 3.2095 -0.9592 40 1 5.0323 1.6668 -1.4783 41 1 3.4998 1.8289 2.2470 42 1 3.6917 3.2922 1.2518 43 1 5.7539 1.2118 1.5798 44 1 5.1240 4.8013 1.9930 45 1 6.3926 4.9497 3.2332 46 1 6.8232 4.4807 1.5712 47 1 6.6450 2.5223 5.2794 48 1 8.7777 1.6063 6.0973 49 1 13.2297 0.1307 8.0976 50 1 10.1217 1.1576 2.0625 51 1 7.9871 2.0783 1.2547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834878560.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:48 Heat of formation + Delta-G solvation = -47.517193 kcal Electronic energy + Delta-G solvation = -26137.976598 eV Core-core repulsion = 22614.829472 eV Total energy + Delta-G solvation = -3523.147126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.00303 -40.07336 -38.97111 -36.72347 -34.47357 -33.87319 -32.63416 -31.82814 -29.81373 -29.15239 -28.35356 -27.26640 -25.32429 -23.77938 -23.57654 -22.84546 -21.33730 -20.92095 -20.14356 -19.69399 -19.09685 -17.25857 -16.88990 -16.49326 -16.32753 -15.85677 -15.69994 -15.58620 -15.44433 -15.13750 -14.76711 -14.42251 -14.35251 -14.20492 -14.12168 -13.93931 -13.79698 -13.56978 -13.12299 -12.99990 -12.93497 -12.62530 -12.49247 -12.43668 -12.29586 -12.16250 -12.02161 -11.74002 -11.69383 -11.49006 -11.35309 -11.29547 -11.27180 -11.21762 -11.09412 -10.89675 -9.80536 -9.29155 -8.99727 -8.50797 -6.23390 0.56541 0.62643 1.30897 1.35032 1.51519 2.27449 2.74819 3.03440 3.15059 3.23724 3.76108 3.78522 3.87000 3.89565 4.07961 4.20063 4.31448 4.35493 4.40693 4.41716 4.50121 4.55281 4.59412 4.67921 4.73844 4.75917 4.80796 4.86098 4.89933 4.90524 4.94106 4.95085 5.03142 5.09108 5.10982 5.18667 5.23438 5.25061 5.28986 5.37322 5.39702 5.42493 5.45855 5.55709 5.57402 5.59642 5.67742 5.71739 5.79097 5.90486 6.21000 6.26395 6.51548 6.83568 7.58251 8.60804 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002186 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.025766 B =12807.970115 C =12841.547273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.069 0.931 5 C -0.118 4.118 6 C -0.127 4.127 7 C -0.102 4.102 8 C -0.082 4.082 9 H 0.065 0.935 10 C 0.070 3.930 11 N -0.680 5.680 12 C 0.145 3.855 13 H 0.048 0.952 14 C -0.128 4.128 15 C -0.155 4.155 16 C -0.069 4.069 17 C -0.237 4.237 18 C 0.120 3.880 19 O -0.245 6.245 20 C -0.399 4.399 21 H 0.080 0.920 22 C 0.008 3.992 23 N -0.923 5.923 24 Si 0.972 3.028 25 H -0.266 1.266 26 H -0.267 1.267 27 H -0.263 1.263 28 C -0.192 4.192 29 C -0.046 4.046 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.023 0.977 42 H 0.073 0.927 43 H 0.341 0.659 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.131 0.869 48 H 0.107 0.893 49 H 0.285 0.715 50 H 0.127 0.873 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.023 3.827 -19.345 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.104 4.104 4 H 0.087 0.913 5 C -0.155 4.155 6 C -0.164 4.164 7 C -0.140 4.140 8 C -0.101 4.101 9 H 0.083 0.917 10 C -0.059 4.059 11 N -0.311 5.311 12 C 0.035 3.965 13 H 0.065 0.935 14 C -0.186 4.186 15 C -0.156 4.156 16 C -0.088 4.088 17 C -0.256 4.256 18 C 0.071 3.929 19 O -0.153 6.153 20 C -0.475 4.475 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.564 5.564 24 Si 0.794 3.206 25 H -0.191 1.191 26 H -0.192 1.192 27 H -0.187 1.187 28 C -0.211 4.211 29 C -0.064 4.064 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.160 0.840 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.149 0.851 48 H 0.124 0.876 49 H 0.094 0.906 50 H 0.145 0.855 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.585 4.215 -19.714 30.273 hybrid contribution 0.598 -0.900 1.417 1.782 sum -21.987 3.316 -18.297 28.795 Atomic orbital electron populations 1.21821 0.95432 1.01701 1.02020 1.21585 0.96193 0.95980 1.01552 1.21777 0.94131 0.96241 0.98210 0.91291 1.22439 0.97796 1.00366 0.94923 1.22538 0.94889 1.01415 0.97570 1.22231 0.97500 1.00378 0.93888 1.21801 0.94820 0.98880 0.94564 0.91683 1.22132 0.87001 1.00488 0.96262 1.60616 1.12656 1.18208 1.39626 1.20162 0.91260 0.94360 0.90698 0.93454 1.21727 1.02032 0.93649 1.01214 1.19793 0.97810 1.05606 0.92374 1.20904 0.95359 0.96612 0.95880 1.21232 0.96170 1.08690 0.99504 1.19696 0.85800 0.93125 0.94285 1.83520 1.34002 1.73114 1.24666 1.20698 1.01513 1.46305 0.79007 0.90235 1.25296 0.99786 0.96449 0.97448 1.69728 1.26762 1.47849 1.12086 0.85204 0.77817 0.78884 0.78723 1.19079 1.19180 1.18710 1.20551 1.00590 1.08556 0.91432 1.20825 0.90450 0.94765 1.00399 0.92053 0.92717 0.92898 0.92073 0.92760 0.91000 0.91663 0.91872 0.91479 0.91893 0.92410 0.95837 0.90822 0.84012 0.91697 0.92999 0.92457 0.85084 0.87556 0.90578 0.85476 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.75 71.98 0.70 -0.95 16 2 C -0.12 -1.44 5.11 30.59 0.16 -1.28 16 3 C -0.08 -1.07 2.58 -10.07 -0.03 -1.10 16 4 H 0.07 0.90 7.67 -2.39 -0.02 0.89 16 5 C -0.12 -1.35 6.21 31.67 0.20 -1.16 16 6 C -0.13 -1.57 6.91 31.91 0.22 -1.35 16 7 C -0.10 -1.51 6.18 31.69 0.20 -1.32 16 8 C -0.08 -1.20 2.74 -10.07 -0.03 -1.23 16 9 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 10 C 0.07 1.15 4.54 86.31 0.39 1.54 16 11 N -0.68 -13.23 5.49 -495.43 -2.72 -15.95 16 12 C 0.14 3.24 2.82 44.17 0.12 3.37 16 13 H 0.05 1.05 7.66 -2.39 -0.02 1.03 16 14 C -0.13 -2.67 9.39 71.98 0.68 -1.99 16 15 C -0.15 -4.56 4.72 -19.83 -0.09 -4.65 16 16 C -0.07 -2.38 9.66 22.25 0.21 -2.17 16 17 C -0.24 -10.46 9.17 22.39 0.21 -10.26 16 18 C 0.12 5.64 6.65 22.58 0.15 5.79 16 19 O -0.25 -13.47 8.59 -22.85 -0.20 -13.66 16 20 C -0.40 -23.75 9.95 67.92 0.68 -23.07 16 21 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 22 C 0.01 0.49 5.49 84.83 0.47 0.96 16 23 N -0.92 -55.59 13.96 21.61 0.30 -55.28 16 24 Si 0.97 45.83 28.62 68.60 1.96 47.79 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 28 C -0.19 -7.35 9.99 22.39 0.22 -7.13 16 29 C -0.05 -1.42 9.00 22.25 0.20 -1.22 16 30 H 0.06 0.59 6.55 -2.38 -0.02 0.58 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.07 0.74 6.27 -2.39 -0.01 0.73 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.06 1.01 7.77 -2.39 -0.02 0.99 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.02 0.41 8.05 -2.39 -0.02 0.39 16 42 H 0.07 1.19 7.32 -2.39 -0.02 1.17 16 43 H 0.34 7.07 7.99 -89.70 -0.72 6.35 16 44 H 0.06 1.14 7.45 -2.39 -0.02 1.13 16 45 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.13 3.85 8.03 -2.91 -0.02 3.83 16 48 H 0.11 5.20 5.64 -2.91 -0.02 5.18 16 49 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 50 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 51 H 0.15 3.81 7.71 -2.91 -0.02 3.79 16 Total: -1.00 -63.03 397.84 4.18 -58.85 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.18 Total: 25.47 kcal Atomic # 6 Polarization: -51.86 SS G_CDS: 4.65 Total: -47.21 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -2.42 Total: -71.23 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.20 Total: -13.66 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.96 Total: 47.79 kcal Total: -63.03 4.18 -58.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834878560.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.331 kcal (2) G-P(sol) polarization free energy of solvation -63.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds