Wall clock time and date at job start Tue Mar 31 2020 12:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47060 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00194 * 293.95620 * 5 4 3 7 7 C 1.50702 * 109.47207 * 157.31833 * 6 5 4 8 8 H 1.08006 * 119.99658 * 0.35146 * 7 6 5 9 9 C 1.37874 * 120.00049 * 180.35092 * 7 6 5 10 10 N 1.31518 * 120.00070 * 5.26481 * 9 7 6 11 11 Si 1.86800 * 119.99983 * 185.26691 * 9 7 6 12 12 H 1.48495 * 109.46963 * 5.00675 * 11 9 7 13 13 H 1.48506 * 109.47091 * 125.00583 * 11 9 7 14 14 H 1.48500 * 109.47359 * 245.00524 * 11 9 7 15 15 C 1.46902 * 110.99925 * 170.00291 * 5 4 3 16 16 H 1.08996 * 109.54269 * 73.19706 * 15 5 4 17 17 C 1.53175 * 109.54221 * 193.37911 * 15 5 4 18 18 C 1.53092 * 109.16753 * 62.88684 * 17 15 5 19 19 O 1.42905 * 109.41745 * 57.60599 * 18 17 15 20 20 C 1.42910 * 114.09561 * 298.84599 * 19 18 17 21 21 H 1.08998 * 109.47687 * 301.17404 * 20 19 18 22 22 C 1.50696 * 109.47865 * 181.14101 * 20 19 18 23 23 C 1.38240 * 120.00208 * 322.30084 * 22 20 19 24 24 C 1.38229 * 120.00278 * 179.81344 * 23 22 20 25 25 C 1.38239 * 119.99860 * 0.41621 * 24 23 22 26 26 C 1.38233 * 119.99836 * 359.82087 * 25 24 23 27 27 C 1.38230 * 120.00224 * 359.97438 * 26 25 24 28 28 C 1.53090 * 109.41479 * 61.15772 * 20 19 18 29 29 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47051 * 299.99904 * 1 2 3 31 31 H 1.08995 * 109.47241 * 59.99774 * 1 2 3 32 32 H 1.08995 * 109.47241 * 120.00226 * 2 1 3 33 33 H 1.08998 * 109.47051 * 240.00096 * 2 1 3 34 34 H 1.09004 * 109.47163 * 300.00203 * 3 2 1 35 35 H 1.08998 * 109.47110 * 60.00132 * 3 2 1 36 36 H 1.08995 * 109.47241 * 300.00226 * 4 3 2 37 37 H 1.09003 * 109.46733 * 60.00470 * 4 3 2 38 38 H 1.09000 * 109.46668 * 277.31648 * 6 5 4 39 39 H 1.08997 * 109.47021 * 37.31564 * 6 5 4 40 40 H 0.96997 * 119.99874 * 179.97438 * 10 9 7 41 41 H 1.09008 * 109.51868 * 182.78920 * 17 15 5 42 42 H 1.08997 * 109.52368 * 302.97684 * 17 15 5 43 43 H 1.08997 * 109.48148 * 177.59009 * 18 17 15 44 44 H 1.09002 * 109.47611 * 297.61553 * 18 17 15 45 45 H 1.08002 * 119.99333 * 0.02562 * 23 22 20 46 46 H 1.08004 * 120.00352 * 180.20923 * 24 23 22 47 47 H 1.08003 * 120.00120 * 179.79165 * 25 24 23 48 48 H 1.08001 * 119.99710 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.00365 * 179.97438 * 27 26 25 50 50 H 1.09004 * 109.52014 * 182.48732 * 28 20 19 51 51 H 1.09000 * 109.52340 * 62.29480 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7106 3.5088 -1.2538 7 6 3.7067 4.9993 -1.0315 8 1 3.9457 5.4006 -0.0576 9 6 3.3981 5.8506 -2.0712 10 7 3.0067 5.3614 -3.2275 11 14 3.5359 7.6988 -1.8374 12 1 4.1085 7.9869 -0.4979 13 1 4.4209 8.2658 -2.8864 14 1 2.1878 8.3129 -1.9420 15 6 5.5084 2.8738 0.2387 16 1 6.0357 2.5316 -0.6517 17 6 5.9286 4.3108 0.5626 18 6 5.2420 4.7557 1.8566 19 8 5.5878 3.8559 2.9116 20 6 5.1773 2.5059 2.6851 21 1 4.0958 2.4721 2.5540 22 6 5.5673 1.6571 3.8676 23 6 6.7664 1.8849 4.5166 24 6 7.1224 1.1088 5.6036 25 6 6.2832 0.0991 6.0364 26 6 5.0864 -0.1320 5.3844 27 6 4.7285 0.6469 4.3000 28 6 5.8615 1.9707 1.4245 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9330 0.9288 0.8908 37 1 3.9337 0.9286 -0.8892 38 1 4.4441 3.2576 -2.0200 39 1 2.7211 3.1873 -1.5787 40 1 2.7892 5.9604 -3.9588 41 1 7.0103 4.3538 0.6909 42 1 5.6311 4.9699 -0.2529 43 1 5.5707 5.7623 2.1149 44 1 4.1613 4.7513 1.7146 45 1 7.4235 2.6716 4.1764 46 1 8.0577 1.2890 6.1128 47 1 6.5629 -0.5096 6.8837 48 1 4.4310 -0.9211 5.7223 49 1 3.7936 0.4662 3.7903 50 1 5.5158 0.9563 1.2253 51 1 6.9417 1.9665 1.5702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256818553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:53 Heat of formation + Delta-G solvation = -24.411253 kcal Electronic energy + Delta-G solvation = -28168.638981 eV Core-core repulsion = 24646.493805 eV Total energy + Delta-G solvation = -3522.145177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.96743 -38.57485 -36.61170 -34.45149 -32.96237 -32.33240 -31.19455 -30.82874 -29.37729 -28.14575 -26.43285 -24.14652 -23.62788 -22.53113 -22.45771 -21.59513 -20.90090 -20.21540 -18.36318 -17.02641 -16.71701 -15.84901 -15.69950 -15.10006 -14.96045 -14.73031 -14.66029 -14.15015 -13.98760 -13.90244 -13.56596 -13.29616 -12.96868 -12.78802 -12.62975 -12.47685 -12.13944 -12.06082 -11.92500 -11.62494 -11.26180 -11.21671 -11.09243 -10.96081 -10.78568 -10.77253 -10.63351 -10.49828 -10.42814 -10.18823 -9.90202 -9.68032 -9.34192 -9.13675 -9.07367 -8.86538 -8.55336 -8.34336 -7.23571 -6.05399 -4.03190 1.38364 1.46233 3.28070 3.36883 3.39422 3.80266 4.24010 4.38673 4.75713 4.91054 4.98989 5.04216 5.17846 5.24946 5.28886 5.30887 5.41225 5.43624 5.50525 5.55929 5.59375 5.68047 5.74502 5.82288 5.85981 5.96252 6.02424 6.02849 6.08479 6.10326 6.13597 6.18780 6.23723 6.27735 6.39250 6.41338 6.49008 6.53438 6.56924 6.65054 6.67688 6.71202 6.82739 6.89086 7.04957 7.12151 7.23670 7.35694 7.78372 7.86582 8.12237 8.20565 8.53503 9.02140 9.57988 11.04981 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.004561 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.139215 B = 6137.221430 C = 7987.248337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.050 3.950 5 N -0.530 5.530 6 C 0.188 3.812 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.888 3.112 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.096 3.904 16 H 0.033 0.967 17 C -0.158 4.158 18 C 0.072 3.928 19 O -0.388 6.388 20 C 0.142 3.858 21 H 0.078 0.922 22 C -0.072 4.072 23 C -0.095 4.095 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.112 4.112 28 C -0.142 4.142 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.018 0.982 38 H -0.011 1.011 39 H 0.036 0.964 40 H 0.260 0.740 41 H 0.048 0.952 42 H 0.121 0.879 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.070 0.930 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -10.741 12.898 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.079 4.079 5 N -0.255 5.255 6 C 0.063 3.937 7 C -0.544 4.544 8 H 0.094 0.906 9 C -0.146 4.146 10 N -0.535 5.535 11 Si 0.716 3.284 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.013 4.013 16 H 0.051 0.949 17 C -0.196 4.196 18 C -0.004 4.004 19 O -0.308 6.308 20 C 0.084 3.916 21 H 0.095 0.905 22 C -0.072 4.072 23 C -0.113 4.113 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.130 4.130 28 C -0.180 4.180 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.007 0.993 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.144 0.856 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.429 -10.369 13.258 17.177 hybrid contribution 0.354 0.485 -1.067 1.225 sum 3.784 -9.884 12.190 16.143 Atomic orbital electron populations 1.21748 0.96197 1.00809 1.01976 1.21492 0.95602 0.97676 1.01191 1.21631 0.95150 0.95271 1.03281 1.22169 0.95290 0.91239 0.99177 1.62200 1.11094 1.12753 1.39474 1.19845 0.96048 0.93977 0.83785 1.21444 1.45552 0.90622 0.96807 0.90570 1.24999 0.95430 0.98730 0.95447 1.69974 1.45534 1.34862 1.03172 0.86594 0.77831 0.85792 0.78188 1.19472 1.21202 1.21071 1.21443 0.89595 0.95338 0.94887 0.94878 1.22544 0.98226 0.97960 1.00854 1.22541 1.00840 0.91103 0.85898 1.87782 1.81327 1.17378 1.44266 1.20670 0.98653 0.82018 0.90278 0.90462 1.19880 0.94657 0.95998 0.96637 1.21055 0.96369 0.98701 0.95169 1.21152 0.99707 0.96231 0.97329 1.21104 0.94956 0.98395 1.00087 1.21056 0.97002 0.99825 0.96288 1.20996 0.99405 0.95720 0.96851 1.22389 1.00491 0.99607 0.95538 0.93406 0.92859 0.92664 0.92674 0.92572 0.91027 0.91665 0.91741 0.96359 0.99324 0.94605 0.93065 0.93317 0.86126 0.90366 0.90781 0.85614 0.86364 0.86507 0.86256 0.85997 0.91153 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.59 5.93 -26.73 -0.16 -1.75 16 3 C -0.12 -1.88 5.19 -26.73 -0.14 -2.02 16 4 C 0.05 0.84 4.23 -3.82 -0.02 0.83 16 5 N -0.53 -10.44 3.18 -227.86 -0.72 -11.16 16 6 C 0.19 4.56 4.60 -4.97 -0.02 4.54 16 7 C -0.51 -13.00 6.90 -34.44 -0.24 -13.24 16 8 H 0.08 1.89 4.32 -52.48 -0.23 1.66 16 9 C 0.06 1.49 5.45 -17.82 -0.10 1.39 16 10 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 11 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 C 0.10 1.77 2.32 -67.53 -0.16 1.61 16 16 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 17 C -0.16 -2.96 5.07 -26.59 -0.13 -3.10 16 18 C 0.07 1.30 5.98 37.20 0.22 1.53 16 19 O -0.39 -6.76 9.65 -35.23 -0.34 -7.10 16 20 C 0.14 2.23 2.51 -27.84 -0.07 2.16 16 21 H 0.08 1.31 7.13 -51.93 -0.37 0.94 16 22 C -0.07 -1.01 4.99 -104.62 -0.52 -1.53 16 23 C -0.09 -1.27 9.36 -39.58 -0.37 -1.64 16 24 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 26 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 27 C -0.11 -1.40 9.67 -39.59 -0.38 -1.78 16 28 C -0.14 -2.22 4.36 -26.59 -0.12 -2.34 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.35 6.24 -51.93 -0.32 1.03 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.98 5.12 -51.93 -0.27 0.72 16 37 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 38 H -0.01 -0.29 7.77 -51.93 -0.40 -0.70 16 39 H 0.04 0.94 5.84 -51.93 -0.30 0.63 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 42 H 0.12 2.60 4.92 -51.93 -0.26 2.35 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.07 1.49 6.58 -51.93 -0.34 1.14 16 45 H 0.13 1.69 7.71 -52.49 -0.40 1.29 16 46 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 47 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 49 H 0.12 1.39 8.05 -52.49 -0.42 0.97 16 50 H 0.07 1.04 5.93 -51.93 -0.31 0.73 16 51 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -27.73 384.94 -11.24 -38.97 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.66 Total: 4.76 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.03 Total: -22.11 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.01 Total: -36.03 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.34 Total: -7.10 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.73 -11.24 -38.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256818553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.557 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds