Wall clock time and date at job start Tue Mar 31 2020 12:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47060 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00194 * 293.95620 * 5 4 3 7 7 C 1.50702 * 109.47207 * 157.31833 * 6 5 4 8 8 H 1.08006 * 119.99658 * 0.35146 * 7 6 5 9 9 C 1.37874 * 120.00049 * 180.35092 * 7 6 5 10 10 N 1.31518 * 120.00070 * 5.26481 * 9 7 6 11 11 Si 1.86800 * 119.99983 * 185.26691 * 9 7 6 12 12 H 1.48495 * 109.46963 * 5.00675 * 11 9 7 13 13 H 1.48506 * 109.47091 * 125.00583 * 11 9 7 14 14 H 1.48500 * 109.47359 * 245.00524 * 11 9 7 15 15 C 1.46902 * 110.99925 * 170.00291 * 5 4 3 16 16 H 1.08996 * 109.54269 * 73.19706 * 15 5 4 17 17 C 1.53175 * 109.54221 * 193.37911 * 15 5 4 18 18 C 1.53092 * 109.16753 * 62.88684 * 17 15 5 19 19 O 1.42905 * 109.41745 * 57.60599 * 18 17 15 20 20 C 1.42910 * 114.09561 * 298.84599 * 19 18 17 21 21 H 1.08998 * 109.47687 * 301.17404 * 20 19 18 22 22 C 1.50696 * 109.47865 * 181.14101 * 20 19 18 23 23 C 1.38240 * 120.00208 * 322.30084 * 22 20 19 24 24 C 1.38229 * 120.00278 * 179.81344 * 23 22 20 25 25 C 1.38239 * 119.99860 * 0.41621 * 24 23 22 26 26 C 1.38233 * 119.99836 * 359.82087 * 25 24 23 27 27 C 1.38230 * 120.00224 * 359.97438 * 26 25 24 28 28 C 1.53090 * 109.41479 * 61.15772 * 20 19 18 29 29 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47051 * 299.99904 * 1 2 3 31 31 H 1.08995 * 109.47241 * 59.99774 * 1 2 3 32 32 H 1.08995 * 109.47241 * 120.00226 * 2 1 3 33 33 H 1.08998 * 109.47051 * 240.00096 * 2 1 3 34 34 H 1.09004 * 109.47163 * 300.00203 * 3 2 1 35 35 H 1.08998 * 109.47110 * 60.00132 * 3 2 1 36 36 H 1.08995 * 109.47241 * 300.00226 * 4 3 2 37 37 H 1.09003 * 109.46733 * 60.00470 * 4 3 2 38 38 H 1.09000 * 109.46668 * 277.31648 * 6 5 4 39 39 H 1.08997 * 109.47021 * 37.31564 * 6 5 4 40 40 H 0.96997 * 119.99874 * 179.97438 * 10 9 7 41 41 H 1.09008 * 109.51868 * 182.78920 * 17 15 5 42 42 H 1.08997 * 109.52368 * 302.97684 * 17 15 5 43 43 H 1.08997 * 109.48148 * 177.59009 * 18 17 15 44 44 H 1.09002 * 109.47611 * 297.61553 * 18 17 15 45 45 H 1.08002 * 119.99333 * 0.02562 * 23 22 20 46 46 H 1.08004 * 120.00352 * 180.20923 * 24 23 22 47 47 H 1.08003 * 120.00120 * 179.79165 * 25 24 23 48 48 H 1.08001 * 119.99710 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.00365 * 179.97438 * 27 26 25 50 50 H 1.09004 * 109.52014 * 182.48732 * 28 20 19 51 51 H 1.09000 * 109.52340 * 62.29480 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7106 3.5088 -1.2538 7 6 3.7067 4.9993 -1.0315 8 1 3.9457 5.4006 -0.0576 9 6 3.3981 5.8506 -2.0712 10 7 3.0067 5.3614 -3.2275 11 14 3.5359 7.6988 -1.8374 12 1 4.1085 7.9869 -0.4979 13 1 4.4209 8.2658 -2.8864 14 1 2.1878 8.3129 -1.9420 15 6 5.5084 2.8738 0.2387 16 1 6.0357 2.5316 -0.6517 17 6 5.9286 4.3108 0.5626 18 6 5.2420 4.7557 1.8566 19 8 5.5878 3.8559 2.9116 20 6 5.1773 2.5059 2.6851 21 1 4.0958 2.4721 2.5540 22 6 5.5673 1.6571 3.8676 23 6 6.7664 1.8849 4.5166 24 6 7.1224 1.1088 5.6036 25 6 6.2832 0.0991 6.0364 26 6 5.0864 -0.1320 5.3844 27 6 4.7285 0.6469 4.3000 28 6 5.8615 1.9707 1.4245 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9330 0.9288 0.8908 37 1 3.9337 0.9286 -0.8892 38 1 4.4441 3.2576 -2.0200 39 1 2.7211 3.1873 -1.5787 40 1 2.7892 5.9604 -3.9588 41 1 7.0103 4.3538 0.6909 42 1 5.6311 4.9699 -0.2529 43 1 5.5707 5.7623 2.1149 44 1 4.1613 4.7513 1.7146 45 1 7.4235 2.6716 4.1764 46 1 8.0577 1.2890 6.1128 47 1 6.5629 -0.5096 6.8837 48 1 4.4310 -0.9211 5.7223 49 1 3.7936 0.4662 3.7903 50 1 5.5158 0.9563 1.2253 51 1 6.9417 1.9665 1.5702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256818553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:52 Heat of formation + Delta-G solvation = -37.215180 kcal Electronic energy + Delta-G solvation = -28169.194201 eV Core-core repulsion = 24646.493805 eV Total energy + Delta-G solvation = -3522.700397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26795 -39.67321 -38.05019 -35.77866 -34.75146 -33.67240 -32.63867 -31.70829 -30.76459 -29.54191 -28.09142 -25.45887 -25.08396 -24.18557 -23.42065 -22.89987 -21.96696 -21.59906 -19.88284 -18.69723 -18.02341 -17.21223 -16.86089 -16.59575 -16.33242 -16.24982 -15.94371 -15.62395 -15.27531 -15.12356 -14.86994 -14.27617 -14.16635 -14.06984 -14.02856 -13.85163 -13.60575 -13.51353 -13.26458 -12.97170 -12.91562 -12.61585 -12.60201 -12.33382 -12.21459 -12.09008 -11.88242 -11.85275 -11.79748 -11.57119 -11.33892 -11.18181 -11.08811 -10.90002 -10.49376 -10.37624 -9.74677 -9.56245 -8.92664 -8.13642 -6.17129 0.47141 0.57810 1.40850 1.43425 1.54399 2.42768 2.80793 3.03807 3.18511 3.23829 3.73328 3.98323 4.02780 4.08687 4.12936 4.19134 4.23175 4.30637 4.31560 4.34753 4.38295 4.47210 4.48808 4.59320 4.70292 4.71715 4.77143 4.79049 4.86517 4.92776 5.01600 5.03586 5.04977 5.09565 5.14794 5.19421 5.20658 5.24377 5.29713 5.33637 5.35430 5.47895 5.50319 5.55427 5.64116 5.68502 5.77439 5.79871 6.16438 6.17852 6.44028 6.45520 6.69294 6.96228 7.48076 8.97282 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.004561 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.139215 B = 6137.221430 C = 7987.248337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.109 4.109 4 C 0.050 3.950 5 N -0.528 5.528 6 C 0.205 3.795 7 C -0.505 4.505 8 H 0.085 0.915 9 C 0.001 3.999 10 N -0.937 5.937 11 Si 0.951 3.049 12 H -0.256 1.256 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.092 3.908 16 H 0.017 0.983 17 C -0.155 4.155 18 C 0.081 3.919 19 O -0.390 6.390 20 C 0.145 3.855 21 H 0.064 0.936 22 C -0.092 4.092 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.129 4.129 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.010 0.990 38 H -0.046 1.046 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.118 0.882 46 H 0.140 0.860 47 H 0.147 0.853 48 H 0.146 0.854 49 H 0.129 0.871 50 H 0.082 0.918 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -12.149 15.984 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.147 4.147 4 C -0.078 4.078 5 N -0.252 5.252 6 C 0.079 3.921 7 C -0.543 4.543 8 H 0.103 0.897 9 C -0.196 4.196 10 N -0.578 5.578 11 Si 0.777 3.223 12 H -0.179 1.179 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.017 4.017 16 H 0.035 0.965 17 C -0.193 4.193 18 C 0.004 3.996 19 O -0.310 6.310 20 C 0.088 3.912 21 H 0.081 0.919 22 C -0.092 4.092 23 C -0.129 4.129 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.167 4.167 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.028 0.972 38 H -0.028 1.028 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.136 0.864 46 H 0.158 0.842 47 H 0.164 0.836 48 H 0.164 0.836 49 H 0.147 0.853 50 H 0.100 0.900 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.079 -11.788 16.369 20.580 hybrid contribution 0.188 0.825 -1.953 2.129 sum 4.268 -10.962 14.416 18.606 Atomic orbital electron populations 1.21738 0.95255 1.02112 1.01494 1.21449 0.96406 0.95179 1.02242 1.21558 0.94488 0.97384 1.01256 1.22283 0.95884 0.89702 0.99898 1.62151 1.12265 1.14342 1.36462 1.19488 0.93701 0.94115 0.84797 1.21791 1.44088 0.91393 0.97036 0.89704 1.25813 0.95377 1.03208 0.95213 1.70110 1.47224 1.36363 1.04126 0.85594 0.77639 0.80435 0.78646 1.17936 1.21151 1.21061 1.21508 0.88406 0.96088 0.95660 0.96491 1.22432 0.99280 0.97439 1.00120 1.22373 0.99251 0.92106 0.85841 1.87790 1.81224 1.18191 1.43785 1.20658 0.97756 0.81473 0.91335 0.91858 1.19776 0.95796 0.96852 0.96791 1.21104 0.96241 0.99324 0.96255 1.21434 1.00742 0.95893 0.96600 1.21509 0.94350 0.97916 1.00424 1.21405 0.97506 0.99844 0.95364 1.21170 0.99527 0.95629 0.97619 1.22282 1.01079 0.99272 0.94064 0.91171 0.92515 0.94051 0.90438 0.92589 0.94585 0.92045 0.89102 0.97193 1.02827 0.97018 0.93187 0.91714 0.89176 0.89067 0.93063 0.86443 0.84225 0.83559 0.83625 0.85308 0.89952 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.11 -2.88 5.93 30.59 0.18 -2.70 16 3 C -0.11 -3.61 5.19 30.59 0.16 -3.46 16 4 C 0.05 1.73 4.23 86.30 0.36 2.09 16 5 N -0.53 -21.50 3.18 -874.81 -2.78 -24.28 16 6 C 0.21 10.51 4.60 85.56 0.39 10.91 16 7 C -0.50 -26.93 6.90 25.60 0.18 -26.75 16 8 H 0.09 4.31 4.32 -2.91 -0.01 4.30 16 9 C 0.00 0.07 5.45 84.65 0.46 0.53 16 10 N -0.94 -55.78 13.29 21.45 0.29 -55.50 16 11 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 13 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 C 0.09 3.45 2.32 45.04 0.10 3.55 16 16 H 0.02 0.69 7.86 -2.39 -0.02 0.68 16 17 C -0.16 -5.87 5.07 30.68 0.16 -5.71 16 18 C 0.08 2.90 5.98 72.01 0.43 3.33 16 19 O -0.39 -13.32 9.65 -148.98 -1.44 -14.75 16 20 C 0.15 4.45 2.51 29.88 0.08 4.52 16 21 H 0.06 2.11 7.13 -2.39 -0.02 2.09 16 22 C -0.09 -2.44 4.99 -19.87 -0.10 -2.54 16 23 C -0.11 -2.76 9.36 22.27 0.21 -2.55 16 24 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 25 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 26 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 27 C -0.12 -2.73 9.67 22.27 0.22 -2.52 16 28 C -0.13 -3.92 4.36 30.69 0.13 -3.79 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.44 6.24 -2.38 -0.01 1.43 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.66 5.12 -2.39 -0.01 2.65 16 37 H 0.01 0.36 8.12 -2.39 -0.02 0.34 16 38 H -0.05 -2.63 7.77 -2.39 -0.02 -2.65 16 39 H 0.01 0.66 5.84 -2.39 -0.01 0.65 16 40 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 42 H 0.09 4.00 4.92 -2.39 -0.01 3.99 16 43 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.05 2.08 6.58 -2.39 -0.02 2.06 16 45 H 0.12 3.02 7.71 -2.91 -0.02 3.00 16 46 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 48 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 49 H 0.13 2.62 8.05 -2.91 -0.02 2.60 16 50 H 0.08 2.30 5.93 -2.38 -0.01 2.28 16 51 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -62.42 384.94 3.33 -59.10 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.89 Total: 24.02 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.35 Total: -34.01 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.50 Total: -79.78 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -1.44 Total: -14.75 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -62.42 3.33 -59.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256818553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.880 kcal (2) G-P(sol) polarization free energy of solvation -62.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds