Wall clock time and date at job start Tue Mar 31 2020 11:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46831 * 2 1 4 4 C 1.53003 * 109.46836 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47319 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46761 * 305.00157 * 5 4 3 7 7 C 1.53000 * 109.46929 * 64.99825 * 5 4 3 8 8 C 1.52994 * 109.47241 * 58.55728 * 7 5 4 9 9 C 1.52993 * 109.47525 * 185.00185 * 5 4 3 10 10 N 1.46498 * 109.47434 * 176.65225 * 9 5 4 11 11 C 1.34774 * 120.00152 * 184.01160 * 10 9 5 12 12 O 1.21283 * 119.99820 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00088 * 180.02562 * 11 10 9 14 14 H 1.09003 * 109.47212 * 59.99845 * 13 11 10 15 15 C 1.50701 * 109.47136 * 299.99648 * 13 11 10 16 16 H 1.08001 * 119.99555 * 333.33365 * 15 13 11 17 17 C 1.37873 * 119.99839 * 153.32971 * 15 13 11 18 18 N 1.31513 * 120.00325 * 5.20879 * 17 15 13 19 19 Si 1.86806 * 119.99746 * 185.20898 * 17 15 13 20 20 H 1.48502 * 109.47169 * 59.99961 * 19 17 15 21 21 H 1.48502 * 109.46891 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47118 * 300.00050 * 19 17 15 23 23 C 1.50702 * 109.47300 * 179.97438 * 13 11 10 24 24 C 1.38238 * 119.99732 * 65.85345 * 23 13 11 25 25 C 1.38240 * 119.99624 * 179.81210 * 24 23 13 26 26 C 1.38232 * 120.00089 * 0.39459 * 25 24 23 27 27 C 1.38238 * 119.99912 * 359.86051 * 26 25 24 28 28 C 1.38234 * 119.99927 * 246.12864 * 23 13 11 29 29 H 1.09003 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47401 * 300.00726 * 1 2 3 31 31 H 1.09003 * 109.46667 * 60.00350 * 1 2 3 32 32 H 1.08991 * 109.47474 * 239.99759 * 2 1 3 33 33 H 1.09003 * 109.46667 * 119.99650 * 2 1 3 34 34 H 1.08999 * 109.47158 * 59.99951 * 3 2 1 35 35 H 1.08994 * 109.47382 * 299.99568 * 3 2 1 36 36 H 1.09004 * 109.46890 * 59.99742 * 4 3 2 37 37 H 1.08994 * 109.47106 * 300.00134 * 4 3 2 38 38 H 1.09004 * 109.46605 * 178.55493 * 7 5 4 39 39 H 1.08999 * 109.47393 * 298.55361 * 7 5 4 40 40 H 1.08993 * 109.47541 * 179.00573 * 8 7 5 41 41 H 1.09009 * 109.46718 * 299.00429 * 8 7 5 42 42 H 1.08996 * 109.47037 * 58.99808 * 8 7 5 43 43 H 1.08994 * 109.47117 * 296.65597 * 9 5 4 44 44 H 1.09000 * 109.47218 * 56.65319 * 9 5 4 45 45 H 0.96998 * 120.00042 * 4.01048 * 10 9 5 46 46 H 0.96996 * 119.99979 * 179.97438 * 18 17 15 47 47 H 1.07998 * 120.00026 * 359.97438 * 24 23 13 48 48 H 1.07999 * 119.99671 * 180.22934 * 25 24 23 49 49 H 1.07993 * 119.99776 * 179.83231 * 26 25 24 50 50 H 1.08001 * 120.00149 * 179.97438 * 27 26 25 51 51 H 1.07993 * 120.00185 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4235 -0.8423 7 6 3.6747 3.5698 1.3068 8 6 4.2543 2.7932 2.4907 9 6 5.6048 2.8868 -0.1251 10 7 6.0866 4.2680 -0.2062 11 6 7.3970 4.5142 -0.4030 12 8 8.1772 3.5923 -0.5135 13 6 7.8926 5.9349 -0.4858 14 1 7.6640 6.4543 0.4449 15 6 7.2138 6.6377 -1.6331 16 1 6.8541 6.0690 -2.4779 17 6 7.0520 8.0066 -1.6043 18 7 7.5792 8.7107 -0.6267 19 14 6.0838 8.8612 -2.9541 20 1 4.6949 8.3361 -2.9754 21 1 6.0570 10.3231 -2.6943 22 1 6.7304 8.6039 -4.2659 23 6 9.3832 5.9349 -0.7073 24 6 9.9067 5.4382 -1.8864 25 6 11.2739 5.4417 -2.0912 26 6 12.1179 5.9344 -1.1136 27 6 11.5947 6.4262 0.0676 28 6 10.2274 6.4263 0.2709 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 4.0601 4.5894 1.3173 39 1 2.5876 3.5915 1.3837 40 1 3.9804 3.2909 3.4208 41 1 3.8552 1.7788 2.4902 42 1 5.3402 2.7564 2.4043 43 1 6.0415 2.4003 0.7470 44 1 5.8961 2.3470 -1.0262 45 1 5.4625 5.0053 -0.1182 46 1 7.4657 9.6738 -0.6067 47 1 9.2475 5.0498 -2.6486 48 1 11.6826 5.0571 -3.0139 49 1 13.1861 5.9346 -1.2725 50 1 12.2542 6.8108 0.8316 51 1 9.8186 6.8106 1.1937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347887430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:31 Heat of formation + Delta-G solvation = -57.874003 kcal Electronic energy + Delta-G solvation = -26808.906353 eV Core-core repulsion = 23285.310123 eV Total energy + Delta-G solvation = -3523.596231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.28556 -38.21449 -37.28502 -34.86705 -33.60397 -32.73974 -31.00721 -30.15346 -29.85394 -28.22239 -26.90915 -24.50054 -23.85248 -23.34071 -21.52221 -21.25995 -20.62656 -19.34112 -18.88479 -16.76324 -16.16031 -16.15179 -15.75384 -15.32857 -15.08192 -14.58926 -14.36457 -14.14995 -13.93145 -13.79116 -13.46747 -13.18935 -12.80363 -12.62139 -12.49507 -12.38666 -12.30921 -12.17514 -11.94865 -11.60133 -11.53426 -11.42341 -11.30769 -11.04997 -10.99444 -10.98357 -10.74181 -10.46446 -10.38863 -10.36479 -10.24369 -10.20166 -9.98051 -9.39657 -8.70601 -8.58830 -8.25286 -7.86041 -7.52128 -6.23503 -4.31066 2.46665 2.49076 3.21645 3.27522 3.29015 3.75680 4.06881 4.30499 4.64506 4.73136 4.83822 4.92248 4.94453 5.05775 5.07703 5.13331 5.30092 5.42242 5.47038 5.58926 5.63778 5.67155 5.77205 5.78718 5.80734 5.82674 5.85524 5.86384 5.94895 5.99950 6.04005 6.09845 6.14476 6.21622 6.28815 6.31141 6.37462 6.39857 6.54853 6.58558 6.67497 6.91209 7.05402 7.20290 7.28909 7.44662 7.52602 7.65618 7.81895 8.02885 8.13357 8.43503 8.71964 9.27943 9.35853 10.84379 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.003342 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.050836 B = 8377.132096 C = 9602.654576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.100 4.100 6 H 0.076 0.924 7 C -0.121 4.121 8 C -0.156 4.156 9 C 0.124 3.876 10 N -0.729 5.729 11 C 0.526 3.474 12 O -0.568 6.568 13 C 0.055 3.945 14 H 0.080 0.920 15 C -0.518 4.518 16 H 0.062 0.938 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.897 3.103 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.004 4.004 24 C -0.085 4.085 25 C -0.136 4.136 26 C -0.150 4.150 27 C -0.133 4.133 28 C -0.114 4.114 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.403 0.597 46 H 0.266 0.734 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 -10.577 3.520 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.152 4.152 5 C -0.119 4.119 6 H 0.095 0.905 7 C -0.158 4.158 8 C -0.213 4.213 9 C 0.000 4.000 10 N -0.382 5.382 11 C 0.316 3.684 12 O -0.447 6.447 13 C 0.034 3.966 14 H 0.098 0.902 15 C -0.555 4.555 16 H 0.080 0.920 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.724 3.276 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.005 4.005 24 C -0.103 4.103 25 C -0.154 4.154 26 C -0.168 4.168 27 C -0.151 4.151 28 C -0.132 4.132 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.239 0.761 46 H 0.076 0.924 47 H 0.128 0.872 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.396 -11.039 3.525 14.310 hybrid contribution -0.745 1.051 -0.776 1.504 sum -9.141 -9.988 2.749 13.816 Atomic orbital electron populations 1.21780 0.96144 1.01339 1.01763 1.21540 0.95611 0.97256 1.01885 1.21652 0.95464 0.96412 1.02214 1.21618 0.95264 0.95980 1.02368 1.21412 0.95113 0.96721 0.98610 0.90519 1.21560 1.00415 0.99706 0.94139 1.21878 1.01693 1.00047 0.97683 1.21263 0.92552 0.84904 1.01287 1.45950 1.09477 1.07405 1.75352 1.21549 0.81079 0.92751 0.73042 1.90580 1.55570 1.47521 1.51010 1.18059 0.89162 0.88269 1.01121 0.90242 1.20641 1.38733 0.91941 1.04213 0.91995 1.24957 0.94914 0.97357 0.95863 1.69930 1.42320 1.07072 1.31653 0.86573 0.80464 0.78373 0.82204 1.19974 1.21140 1.20042 1.19980 0.95956 0.92311 0.92300 1.20802 0.93924 0.98264 0.97284 1.20933 0.94077 1.01822 0.98587 1.20768 0.98299 1.02700 0.95029 1.20882 0.95274 1.01646 0.97320 1.20941 0.92821 1.00373 0.99083 0.93026 0.92838 0.92807 0.92155 0.92183 0.91710 0.92062 0.91928 0.91379 0.91519 0.91928 0.93140 0.92675 0.92161 0.92223 0.92384 0.76131 0.92391 0.87246 0.87726 0.87841 0.87694 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.04 4.97 -26.73 -0.13 -1.17 16 4 C -0.11 -1.12 4.44 -26.73 -0.12 -1.24 16 5 C -0.10 -1.16 2.24 -90.62 -0.20 -1.36 16 6 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.12 -1.33 5.30 -26.73 -0.14 -1.47 16 8 C -0.16 -1.67 9.21 37.15 0.34 -1.33 16 9 C 0.12 1.88 4.85 -4.05 -0.02 1.86 16 10 N -0.73 -13.21 5.21 -60.30 -0.31 -13.52 16 11 C 0.53 11.72 7.04 -10.99 -0.08 11.64 16 12 O -0.57 -13.98 15.41 5.55 0.09 -13.89 16 13 C 0.05 1.31 2.23 -94.07 -0.21 1.10 16 14 H 0.08 2.00 7.39 -51.93 -0.38 1.61 16 15 C -0.52 -12.97 7.48 -34.44 -0.26 -13.22 16 16 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 17 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 18 N -0.87 -23.20 12.99 55.43 0.72 -22.48 16 19 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.00 -0.11 4.30 -104.62 -0.45 -0.56 16 24 C -0.08 -1.97 8.30 -39.58 -0.33 -2.30 16 25 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 26 C -0.15 -2.91 10.05 -39.58 -0.40 -3.30 16 27 C -0.13 -2.68 10.05 -39.58 -0.40 -3.07 16 28 C -0.11 -2.57 9.67 -39.58 -0.38 -2.96 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.56 6.60 -51.93 -0.34 0.21 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.65 6.16 -51.93 -0.32 0.34 16 38 H 0.07 0.82 6.95 -51.93 -0.36 0.45 16 39 H 0.06 0.61 6.63 -51.93 -0.34 0.27 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.53 6.35 -51.92 -0.33 0.20 16 42 H 0.06 0.74 6.34 -51.93 -0.33 0.41 16 43 H 0.06 0.92 6.27 -51.93 -0.33 0.60 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.40 6.96 7.30 -40.82 -0.30 6.66 16 46 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.11 2.58 7.90 -52.49 -0.41 2.17 16 48 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 49 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 50 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 51 H 0.11 2.40 7.95 -52.49 -0.42 1.98 16 LS Contribution 403.51 15.07 6.08 6.08 Total: -1.00 -28.54 403.51 -10.42 -38.96 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -8.91 Total: 10.63 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -3.06 Total: -20.69 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.41 Total: -36.00 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -28.54 -10.42 -38.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347887430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.914 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds