Wall clock time and date at job start Tue Mar 31 2020 11:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46831 * 2 1 4 4 C 1.53003 * 109.46836 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47319 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46761 * 305.00157 * 5 4 3 7 7 C 1.53000 * 109.46929 * 64.99825 * 5 4 3 8 8 C 1.52994 * 109.47241 * 58.55728 * 7 5 4 9 9 C 1.52993 * 109.47525 * 185.00185 * 5 4 3 10 10 N 1.46498 * 109.47434 * 176.65225 * 9 5 4 11 11 C 1.34774 * 120.00152 * 184.01160 * 10 9 5 12 12 O 1.21283 * 119.99820 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00088 * 180.02562 * 11 10 9 14 14 H 1.09003 * 109.47212 * 59.99845 * 13 11 10 15 15 C 1.50701 * 109.47136 * 299.99648 * 13 11 10 16 16 H 1.08001 * 119.99555 * 333.33365 * 15 13 11 17 17 C 1.37873 * 119.99839 * 153.32971 * 15 13 11 18 18 N 1.31513 * 120.00325 * 5.20879 * 17 15 13 19 19 Si 1.86806 * 119.99746 * 185.20898 * 17 15 13 20 20 H 1.48502 * 109.47169 * 59.99961 * 19 17 15 21 21 H 1.48502 * 109.46891 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47118 * 300.00050 * 19 17 15 23 23 C 1.50702 * 109.47300 * 179.97438 * 13 11 10 24 24 C 1.38238 * 119.99732 * 65.85345 * 23 13 11 25 25 C 1.38240 * 119.99624 * 179.81210 * 24 23 13 26 26 C 1.38232 * 120.00089 * 0.39459 * 25 24 23 27 27 C 1.38238 * 119.99912 * 359.86051 * 26 25 24 28 28 C 1.38234 * 119.99927 * 246.12864 * 23 13 11 29 29 H 1.09003 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47401 * 300.00726 * 1 2 3 31 31 H 1.09003 * 109.46667 * 60.00350 * 1 2 3 32 32 H 1.08991 * 109.47474 * 239.99759 * 2 1 3 33 33 H 1.09003 * 109.46667 * 119.99650 * 2 1 3 34 34 H 1.08999 * 109.47158 * 59.99951 * 3 2 1 35 35 H 1.08994 * 109.47382 * 299.99568 * 3 2 1 36 36 H 1.09004 * 109.46890 * 59.99742 * 4 3 2 37 37 H 1.08994 * 109.47106 * 300.00134 * 4 3 2 38 38 H 1.09004 * 109.46605 * 178.55493 * 7 5 4 39 39 H 1.08999 * 109.47393 * 298.55361 * 7 5 4 40 40 H 1.08993 * 109.47541 * 179.00573 * 8 7 5 41 41 H 1.09009 * 109.46718 * 299.00429 * 8 7 5 42 42 H 1.08996 * 109.47037 * 58.99808 * 8 7 5 43 43 H 1.08994 * 109.47117 * 296.65597 * 9 5 4 44 44 H 1.09000 * 109.47218 * 56.65319 * 9 5 4 45 45 H 0.96998 * 120.00042 * 4.01048 * 10 9 5 46 46 H 0.96996 * 119.99979 * 179.97438 * 18 17 15 47 47 H 1.07998 * 120.00026 * 359.97438 * 24 23 13 48 48 H 1.07999 * 119.99671 * 180.22934 * 25 24 23 49 49 H 1.07993 * 119.99776 * 179.83231 * 26 25 24 50 50 H 1.08001 * 120.00149 * 179.97438 * 27 26 25 51 51 H 1.07993 * 120.00185 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4235 -0.8423 7 6 3.6747 3.5698 1.3068 8 6 4.2543 2.7932 2.4907 9 6 5.6048 2.8868 -0.1251 10 7 6.0866 4.2680 -0.2062 11 6 7.3970 4.5142 -0.4030 12 8 8.1772 3.5923 -0.5135 13 6 7.8926 5.9349 -0.4858 14 1 7.6640 6.4543 0.4449 15 6 7.2138 6.6377 -1.6331 16 1 6.8541 6.0690 -2.4779 17 6 7.0520 8.0066 -1.6043 18 7 7.5792 8.7107 -0.6267 19 14 6.0838 8.8612 -2.9541 20 1 4.6949 8.3361 -2.9754 21 1 6.0570 10.3231 -2.6943 22 1 6.7304 8.6039 -4.2659 23 6 9.3832 5.9349 -0.7073 24 6 9.9067 5.4382 -1.8864 25 6 11.2739 5.4417 -2.0912 26 6 12.1179 5.9344 -1.1136 27 6 11.5947 6.4262 0.0676 28 6 10.2274 6.4263 0.2709 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 4.0601 4.5894 1.3173 39 1 2.5876 3.5915 1.3837 40 1 3.9804 3.2909 3.4208 41 1 3.8552 1.7788 2.4902 42 1 5.3402 2.7564 2.4043 43 1 6.0415 2.4003 0.7470 44 1 5.8961 2.3470 -1.0262 45 1 5.4625 5.0053 -0.1182 46 1 7.4657 9.6738 -0.6067 47 1 9.2475 5.0498 -2.6486 48 1 11.6826 5.0571 -3.0139 49 1 13.1861 5.9346 -1.2725 50 1 12.2542 6.8108 0.8316 51 1 9.8186 6.8106 1.1937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347887430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:30 Heat of formation + Delta-G solvation = -70.616297 kcal Electronic energy + Delta-G solvation = -26809.458901 eV Core-core repulsion = 23285.310123 eV Total energy + Delta-G solvation = -3524.148778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92614 -39.59349 -38.64926 -35.81258 -35.49638 -34.05483 -32.82854 -31.51787 -30.97530 -29.63556 -28.30906 -25.96930 -25.15350 -24.37509 -23.19280 -22.42800 -21.78432 -20.95472 -19.98508 -18.66339 -17.75765 -17.52466 -17.02543 -16.71520 -16.34616 -16.24260 -15.75167 -15.46463 -15.23505 -15.12026 -14.65622 -14.45931 -14.07957 -14.02877 -13.84091 -13.61336 -13.41182 -13.37374 -13.29048 -13.08174 -13.02512 -12.83029 -12.72803 -12.25875 -12.19972 -12.02457 -11.95862 -11.79010 -11.68556 -11.53751 -11.35281 -11.29250 -11.27041 -11.09059 -10.64169 -10.41325 -9.83123 -9.53916 -9.23276 -8.18837 -6.32082 0.77830 0.82970 1.43897 1.45112 1.52210 1.96151 2.43546 2.57892 3.09922 3.29215 3.73525 3.89327 3.94481 4.18571 4.23073 4.24379 4.30632 4.35176 4.40165 4.45453 4.51968 4.55187 4.58713 4.66196 4.68242 4.77287 4.87474 4.88941 4.94583 4.97134 4.98930 5.02808 5.10326 5.13123 5.16962 5.23642 5.32326 5.33319 5.37863 5.39497 5.45359 5.49434 5.53877 5.64513 5.65891 5.72958 5.79628 5.84975 5.96320 6.25864 6.42166 6.71835 6.81008 7.35464 7.56287 8.88473 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.003342 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.050836 B = 8377.132096 C = 9602.654576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.109 4.109 5 C -0.090 4.090 6 H 0.075 0.925 7 C -0.119 4.119 8 C -0.153 4.153 9 C 0.124 3.876 10 N -0.716 5.716 11 C 0.524 3.476 12 O -0.595 6.595 13 C 0.058 3.942 14 H 0.058 0.942 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.034 3.966 18 N -0.901 5.901 19 Si 0.954 3.046 20 H -0.261 1.261 21 H -0.284 1.284 22 H -0.280 1.280 23 C -0.032 4.032 24 C -0.112 4.112 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.131 4.131 28 C -0.139 4.139 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.408 0.592 46 H 0.266 0.734 47 H 0.093 0.907 48 H 0.134 0.866 49 H 0.146 0.854 50 H 0.139 0.861 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.274 -11.010 3.332 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.147 4.147 5 C -0.108 4.108 6 H 0.093 0.907 7 C -0.156 4.156 8 C -0.210 4.210 9 C 0.001 3.999 10 N -0.367 5.367 11 C 0.313 3.687 12 O -0.477 6.477 13 C 0.036 3.964 14 H 0.076 0.924 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.168 4.168 18 N -0.538 5.538 19 Si 0.779 3.221 20 H -0.186 1.186 21 H -0.209 1.209 22 H -0.205 1.205 23 C -0.033 4.033 24 C -0.130 4.130 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.149 4.149 28 C -0.157 4.157 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.244 0.756 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.152 0.848 49 H 0.164 0.836 50 H 0.157 0.843 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.739 -11.483 3.344 14.812 hybrid contribution -0.590 1.139 -0.691 1.457 sum -9.329 -10.344 2.653 14.180 Atomic orbital electron populations 1.21777 0.95545 1.01821 1.01858 1.21530 0.96131 0.96584 1.01996 1.21610 0.94190 0.97116 1.02355 1.21580 0.96275 0.94337 1.02512 1.21352 0.92151 0.98311 0.99035 0.90667 1.21557 1.01582 0.98720 0.93777 1.21853 1.00305 1.01034 0.97843 1.21436 0.95148 0.82749 1.00576 1.45882 1.08198 1.09071 1.73559 1.21338 0.82212 0.91903 0.73244 1.90545 1.56586 1.47901 1.52674 1.17948 0.89885 0.88883 0.99651 0.92415 1.20719 1.38688 0.92227 1.04178 0.92833 1.25599 0.95679 0.97819 0.97711 1.70039 1.43467 1.07115 1.33156 0.85678 0.79751 0.77343 0.79334 1.18589 1.20948 1.20522 1.20099 0.96087 0.93763 0.93371 1.20838 0.95386 0.99845 0.96977 1.21312 0.93002 1.01032 1.00163 1.21248 1.00322 1.00772 0.93903 1.21295 0.94496 1.00535 0.98537 1.21096 0.94314 1.01363 0.98908 0.92404 0.92556 0.92909 0.92337 0.91836 0.91194 0.92280 0.92202 0.90898 0.93060 0.89943 0.92438 0.91134 0.94235 0.92383 0.93570 0.75610 0.92485 0.88884 0.84775 0.83582 0.84325 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.75 5.93 30.60 0.18 -1.57 16 3 C -0.12 -1.79 4.97 30.60 0.15 -1.64 16 4 C -0.11 -2.01 4.44 30.59 0.14 -1.87 16 5 C -0.09 -2.03 2.24 -10.80 -0.02 -2.06 16 6 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 7 C -0.12 -2.51 5.30 30.59 0.16 -2.35 16 8 C -0.15 -3.15 9.21 71.98 0.66 -2.48 16 9 C 0.12 3.84 4.85 86.38 0.42 4.25 16 10 N -0.72 -26.88 5.21 -463.08 -2.41 -29.30 16 11 C 0.52 24.39 7.04 87.66 0.62 25.00 16 12 O -0.60 -30.49 15.41 -3.04 -0.05 -30.54 16 13 C 0.06 2.88 2.23 -13.03 -0.03 2.85 16 14 H 0.06 3.08 7.39 -2.39 -0.02 3.06 16 15 C -0.52 -26.89 7.48 25.60 0.19 -26.70 16 16 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 17 C 0.03 1.77 5.45 84.65 0.46 2.23 16 18 N -0.90 -48.87 12.99 21.45 0.28 -48.59 16 19 Si 0.95 41.13 29.54 68.60 2.03 43.15 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 C -0.03 -1.60 4.30 -19.86 -0.09 -1.69 16 24 C -0.11 -5.34 8.30 22.27 0.18 -5.16 16 25 C -0.14 -5.47 10.05 22.27 0.22 -5.24 16 26 C -0.14 -5.22 10.05 22.27 0.22 -4.99 16 27 C -0.13 -5.04 10.05 22.27 0.22 -4.82 16 28 C -0.14 -6.37 9.67 22.27 0.22 -6.15 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.03 6.60 -2.39 -0.02 1.01 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.29 6.16 -2.39 -0.01 1.27 16 38 H 0.05 1.24 6.95 -2.38 -0.02 1.23 16 39 H 0.08 1.45 6.63 -2.39 -0.02 1.43 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.22 6.35 -2.38 -0.02 1.21 16 42 H 0.04 0.97 6.34 -2.39 -0.02 0.95 16 43 H 0.06 1.84 6.27 -2.39 -0.01 1.82 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 45 H 0.41 14.56 7.30 -92.71 -0.68 13.88 16 46 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.09 4.59 7.90 -2.91 -0.02 4.57 16 48 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 49 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 50 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 51 H 0.10 4.76 7.95 -2.91 -0.02 4.74 16 Total: -1.00 -62.69 403.51 4.69 -58.00 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: 0.21 Total: 40.86 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 4.63 Total: -33.59 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -2.13 Total: -77.89 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.54 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -62.69 4.69 -58.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347887430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.613 kcal (2) G-P(sol) polarization free energy of solvation -62.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds