Wall clock time and date at job start Tue Mar 31 2020 11:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47225 * 2 1 4 4 C 1.52998 * 109.47368 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47218 * 185.08692 * 4 3 2 6 6 H 1.08994 * 109.47462 * 55.20912 * 5 4 3 7 7 C 1.53001 * 109.46868 * 295.20712 * 5 4 3 8 8 C 1.52996 * 109.47548 * 298.10029 * 7 5 4 9 9 C 1.53003 * 109.47380 * 182.87550 * 8 7 5 10 10 C 1.53001 * 109.46929 * 175.21208 * 5 4 3 11 11 N 1.46500 * 109.46964 * 184.99577 * 10 5 4 12 12 C 1.34779 * 120.00193 * 179.97438 * 11 10 5 13 13 O 1.21609 * 119.99939 * 0.02562 * 12 11 10 14 14 C 1.47426 * 120.00092 * 180.02562 * 12 11 10 15 15 C 1.39225 * 120.28584 * 5.35818 * 14 12 11 16 16 C 1.38221 * 120.09682 * 180.02562 * 15 14 12 17 17 C 1.38828 * 120.67135 * 0.02562 * 16 15 14 18 18 C 1.37600 * 120.57281 * 0.02562 * 17 16 15 19 19 C 1.40701 * 119.87909 * 359.97438 * 18 17 16 20 20 C 1.40893 * 120.32722 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00467 * 214.48769 * 20 19 18 22 22 C 1.40274 * 119.99780 * 34.48536 * 20 19 18 23 23 N 1.30627 * 120.00368 * 9.77977 * 22 20 19 24 24 Si 1.86799 * 119.99850 * 189.77932 * 22 20 19 25 25 H 1.48503 * 109.47325 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47332 * 119.99921 * 24 22 20 27 27 H 1.48496 * 109.47200 * 240.00009 * 24 22 20 28 28 H 1.09002 * 109.47478 * 59.99381 * 1 2 3 29 29 H 1.09000 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47151 * 299.99836 * 1 2 3 31 31 H 1.08999 * 109.46651 * 240.00196 * 2 1 3 32 32 H 1.09000 * 109.47505 * 120.00066 * 2 1 3 33 33 H 1.09002 * 109.46922 * 60.00024 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00668 * 3 2 1 35 35 H 1.09001 * 109.46991 * 65.08658 * 4 3 2 36 36 H 1.08998 * 109.47027 * 305.08359 * 4 3 2 37 37 H 1.09005 * 109.46960 * 58.10288 * 7 5 4 38 38 H 1.08999 * 109.47313 * 178.09834 * 7 5 4 39 39 H 1.09008 * 109.46957 * 302.87526 * 8 7 5 40 40 H 1.08997 * 109.47513 * 62.87167 * 8 7 5 41 41 H 1.08998 * 109.47078 * 299.99891 * 9 8 7 42 42 H 1.09000 * 109.46889 * 59.99843 * 9 8 7 43 43 H 1.08998 * 109.46967 * 179.97438 * 9 8 7 44 44 H 1.09000 * 109.47137 * 64.99928 * 10 5 4 45 45 H 1.08997 * 109.46767 * 304.99717 * 10 5 4 46 46 H 0.97001 * 120.00201 * 0.02562 * 11 10 5 47 47 H 1.08003 * 119.94872 * 0.02562 * 15 14 12 48 48 H 1.07996 * 119.66245 * 180.27766 * 16 15 14 49 49 H 1.08003 * 119.70941 * 180.02562 * 17 16 15 50 50 H 1.07996 * 120.05790 * 180.02562 * 18 17 16 51 51 H 0.96998 * 120.00344 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8793 0.1273 6 1 3.6487 3.3403 1.0158 7 6 3.6702 3.6781 -1.1117 8 6 4.3142 3.0590 -2.3538 9 6 3.9629 3.8994 -3.5831 10 6 5.6053 2.8703 0.2467 11 7 6.0843 4.2335 0.4885 12 6 7.4039 4.4692 0.6288 13 8 8.1970 3.5504 0.5542 14 6 7.8858 5.8410 0.8727 15 6 6.9792 6.8790 1.0701 16 6 7.4353 8.1637 1.2979 17 6 8.7961 8.4363 1.3326 18 6 9.7163 7.4316 1.1401 19 6 9.2781 6.1151 0.9063 20 6 10.2122 5.0790 0.7084 21 1 9.9875 4.2723 0.0265 22 6 11.4340 5.0953 1.3972 23 7 11.6305 5.9576 2.3586 24 14 12.7803 3.8838 0.9397 25 1 12.3111 3.0193 -0.1729 26 1 13.9918 4.6283 0.5118 27 1 13.1079 3.0401 2.1170 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 1.0098 -0.9329 36 1 3.9337 0.8517 0.8401 37 1 2.5854 3.6562 -1.2157 38 1 4.0042 4.7102 -1.0055 39 1 5.3967 3.0343 -2.2278 40 1 3.9410 2.0438 -2.4889 41 1 2.8805 3.9240 -3.7091 42 1 4.3362 4.9145 -3.4480 43 1 4.4221 3.4585 -4.4679 44 1 6.0400 2.4912 -0.6783 45 1 5.9009 2.2286 1.0767 46 1 5.4517 4.9664 0.5484 47 1 5.9179 6.6800 1.0451 48 1 6.7259 8.9628 1.4546 49 1 9.1354 9.4458 1.5123 50 1 10.7730 7.6529 1.1692 51 1 12.4755 5.9690 2.8347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001445625154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:46 Heat of formation + Delta-G solvation = -61.922446 kcal Electronic energy + Delta-G solvation = -26698.165658 eV Core-core repulsion = 23174.393874 eV Total energy + Delta-G solvation = -3523.771784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.23060 -38.03136 -36.59997 -35.02470 -33.83826 -33.25551 -31.76161 -29.98806 -29.57375 -28.21813 -26.23179 -25.29231 -23.89717 -22.55305 -22.01063 -21.20862 -20.72351 -19.39061 -18.96049 -17.46642 -16.31012 -16.04704 -15.43630 -15.31023 -15.04292 -14.76097 -14.28735 -14.08400 -13.79468 -13.68510 -13.48218 -13.30315 -12.97946 -12.85947 -12.68597 -12.52154 -12.08579 -12.05619 -11.74973 -11.65644 -11.49842 -11.48288 -11.32039 -11.11451 -10.97698 -10.86177 -10.71904 -10.63080 -10.51371 -10.46932 -10.27317 -10.20503 -10.03052 -9.63466 -9.24699 -8.37560 -8.24259 -7.55687 -7.32335 -6.77049 -4.35069 2.39686 2.82256 3.12556 3.22196 3.24128 4.00146 4.01223 4.22332 4.59654 4.68024 4.71758 4.78240 4.89049 4.90342 4.98841 5.19272 5.26239 5.31812 5.45191 5.54121 5.55132 5.65061 5.66539 5.69297 5.74384 5.77230 5.80499 5.88284 5.94398 5.96135 6.01713 6.05100 6.07287 6.10403 6.21978 6.28357 6.32525 6.33475 6.35766 6.48191 6.66727 6.97911 7.13001 7.20968 7.29134 7.48988 7.65046 7.91233 8.01647 8.20746 8.45045 8.70374 8.85711 8.93466 9.47892 10.18843 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.003019 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.624995 B = 9272.545268 C =10079.540694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.099 4.099 6 H 0.073 0.927 7 C -0.114 4.114 8 C -0.130 4.130 9 C -0.151 4.151 10 C 0.127 3.873 11 N -0.747 5.747 12 C 0.563 3.437 13 O -0.539 6.539 14 C -0.260 4.260 15 C -0.057 4.057 16 C -0.246 4.246 17 C -0.096 4.096 18 C -0.148 4.148 19 C 0.145 3.855 20 C -0.416 4.416 21 H 0.105 0.895 22 C 0.069 3.931 23 N -0.794 5.794 24 Si 0.915 3.085 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.390 0.610 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.116 0.884 51 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.346 -6.063 -5.318 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.152 4.152 5 C -0.118 4.118 6 H 0.092 0.908 7 C -0.152 4.152 8 C -0.167 4.167 9 C -0.208 4.208 10 C 0.003 3.997 11 N -0.401 5.401 12 C 0.357 3.643 13 O -0.418 6.418 14 C -0.265 4.265 15 C -0.076 4.076 16 C -0.266 4.266 17 C -0.115 4.115 18 C -0.167 4.167 19 C 0.141 3.859 20 C -0.444 4.444 21 H 0.123 0.877 22 C -0.149 4.149 23 N -0.419 5.419 24 Si 0.740 3.260 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.225 0.775 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.134 0.866 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.580 -6.692 -5.199 17.736 hybrid contribution 0.232 -0.009 0.149 0.276 sum -15.348 -6.701 -5.051 17.492 Atomic orbital electron populations 1.21778 0.96137 1.01379 1.01714 1.21544 0.95607 0.97230 1.01965 1.21642 0.95444 0.96442 1.02081 1.21608 0.95226 0.95896 1.02498 1.21421 0.95216 0.96464 0.98695 0.90816 1.21631 1.00107 0.99413 0.94005 1.21656 1.01671 0.99074 0.94297 1.21759 1.00799 1.00438 0.97846 1.21246 0.92266 0.85090 1.01121 1.46013 1.08204 1.08770 1.77162 1.18407 0.80640 0.89532 0.75707 1.90673 1.54096 1.46122 1.50860 1.19485 0.94464 0.91140 1.21389 1.20640 0.96200 0.93140 0.97632 1.20275 0.94989 0.95762 1.15551 1.20794 0.93455 0.97575 0.99659 1.21336 0.98712 0.92085 1.04608 1.17494 0.89952 0.92493 0.85947 1.20189 0.97182 1.06875 1.20138 0.87703 1.26116 0.99138 0.95955 0.93692 1.69724 1.24890 1.31605 1.15713 0.86129 0.79511 0.80518 0.79864 1.18046 1.19922 1.19944 0.92855 0.92995 0.92835 0.92139 0.92107 0.92117 0.91799 0.91373 0.91822 0.91926 0.91867 0.91169 0.92052 0.93223 0.92670 0.93046 0.91809 0.92535 0.77532 0.89361 0.89170 0.89134 0.86605 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -0.96 4.84 -26.73 -0.13 -1.09 16 4 C -0.11 -1.08 4.50 -26.73 -0.12 -1.20 16 5 C -0.10 -1.08 2.20 -90.62 -0.20 -1.28 16 6 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.11 -1.17 4.63 -26.73 -0.12 -1.30 16 8 C -0.13 -1.39 5.25 -26.73 -0.14 -1.53 16 9 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 10 C 0.13 1.90 4.81 -4.04 -0.02 1.88 16 11 N -0.75 -13.16 5.25 -61.38 -0.32 -13.48 16 12 C 0.56 13.12 7.72 -12.52 -0.10 13.03 16 13 O -0.54 -14.35 13.59 5.27 0.07 -14.28 16 14 C -0.26 -6.39 5.92 -104.37 -0.62 -7.01 16 15 C -0.06 -1.23 9.52 -39.22 -0.37 -1.60 16 16 C -0.25 -5.27 10.03 -39.37 -0.39 -5.67 16 17 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 18 C -0.15 -3.80 8.62 -38.89 -0.34 -4.13 16 19 C 0.15 3.94 5.50 -106.54 -0.59 3.35 16 20 C -0.42 -11.54 7.67 -37.81 -0.29 -11.83 16 21 H 0.11 3.03 5.93 -52.49 -0.31 2.72 16 22 C 0.07 1.80 5.24 -17.30 -0.09 1.71 16 23 N -0.79 -20.86 11.19 55.56 0.62 -20.24 16 24 Si 0.92 19.91 29.57 -169.99 -5.03 14.88 16 25 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.51 6.77 -51.93 -0.35 0.16 16 35 H 0.07 0.64 6.30 -51.93 -0.33 0.32 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.56 6.58 -51.93 -0.34 0.22 16 38 H 0.06 0.71 7.23 -51.93 -0.38 0.33 16 39 H 0.07 0.91 6.13 -51.92 -0.32 0.59 16 40 H 0.06 0.60 6.52 -51.93 -0.34 0.26 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 1.01 6.06 -51.93 -0.31 0.70 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.39 6.01 5.72 -40.82 -0.23 5.78 16 47 H 0.09 1.56 6.43 -52.48 -0.34 1.23 16 48 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 49 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 50 H 0.12 3.03 6.64 -52.49 -0.35 2.68 16 51 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -29.51 395.58 -10.68 -40.19 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.65 Total: 9.16 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -3.34 Total: -22.19 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.30 Total: -33.72 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.07 Total: -14.28 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.51 -10.68 -40.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445625154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.730 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds